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RXRA target genes for motif:
Rxra_nuclearreceptor_DBD_dimeric_12_1

The Rxra_nuclearreceptor_DBD_dimeric_12_1 motif was discovered for RXRA and was found in the SELEX repository.

RXRA motif sequence logo


RXRA motif positions


 

RXRA target gene list


Download all RXRA TF binding sites
GeneEntrez# of SitesStrandChromosomePromoter LocationTSS
RANBP10 57610 1 chr16 - 67840055-67845555 67840555
NKAIN2 154215 1 chr6 + 124120068-124125568 124125068
ARMC7 79637 1 chr17 + 73101081-73106581 73106081
NR3C2 4306 1 chr4 - 149363172-149368672 149363672
SLC9A3R1 9368 2 chr17 + 72739750-72745250 72744750
SLC26A4 5172 2 chr7 + 107296079-107301579 107301079
GPR68 8111 2 chr14 - 91719724-91725224 91720224
PPIL2 23759 1 chr22 + 22015272-22020772 22020272
IMPA1 3612 1 chr8 - 82598089-82603589 82598589
ADM 133 2 chr11 + 10321641-10327141 10326641
IDH1 3417 2 chr2 - 209119306-209124806 209119806
DDHD1 80821 1 chr14 - 53619546-53625046 53620046
TAF8 129685 1 chr6 + 42013250-42018750 42018250
IRF1 3659 1 chr5 - 131825965-131831465 131826465
APOBR 55911 2 chr16 + 28500969-28506469 28505969
IL6ST 3572 2 chr5 - 55290321-55295821 55290821
ARAP1 116985 1 chr11 - 72462934-72468434 72463434
ATP2B3 492 1 chrX + 152796579-152802079 152801579
~ 404734 1 chr5 + 139776398-139781898 139781398
OSTF1 26578 1 chr9 + 77698397-77703897 77703397
IK 3550 1 chr5 + 140022383-140027883 140027383
GPRC5D 55507 1 chr12 - 13102818-13108318 13103318
KRTAP5-5 439915 1 chr11 + 1646032-1651532 1651032
SLCO2A1 6578 2 chr3 - 133748420-133753920 133748920
TMEM190 147744 1 chr19 + 55883203-55888703 55888203
TMEM106C 79022 1 chr12 + 48352329-48357829 48357329
PPTC7 160760 1 chr12 - 111020564-111026064 111021064
DAAM2 23500 1 chr6 + 39755158-39761272 39760772
GLT25D1 79709 1 chr19 + 17661510-17667010 17666510
DNAJB1 3337 1 chr19 - 14628701-14634201 14629201
OSTM1 28962 1 chr6 - 108395441-108400941 108395941
JUNB 3726 2 chr19 + 12897309-12902809 12902309
C11orf80 79703 2 chr11 + 66507206-66512706 66512206
KIF25 3834 1 chr6 + 168413552-168419052 168418552
PITPNC1 26207 1 chr17 + 65368396-65373896 65373396
LONRF1 91694 1 chr8 - 12612492-12617992 12612992
KIF26A 26153 2 chr14 + 104600059-104605559 104605059
GJB5 2709 2 chr1 + 35215647-35221147 35220647
CDCA7L 55536 2 chr7 - 21985042-21990542 21985542
SLC7A5 8140 1 chr16 - 87902600-87908100 87903100
CALM3 801 1 chr14 + 90858326-90863826 90863326
PRAM1 84106 2 chr19 - 8567038-8572538 8567538
GPR116 221395 1 chr6 - 46922175-46927675 46922675
PACRGL 133015 2 chr4 + 20697035-20702535 20702035
COX5A 9377 1 chr15 - 75229995-75235495 75230495
DOCK2 1794 1 chr5 + 169059250-169064750 169064250
MAGEH1 28986 1 chrX + 55473537-55479037 55478537
APBA3 9546 2 chr19 - 3761173-3766673 3761673
RPL24 6152 2 chr3 - 101405063-101410563 101405563
KRT35 3886 2 chr17 - 39636892-39642392 39637392
XXYLT1 152002 2 chr3 - 194991395-194996895 194991895
SFT2D2 375035 2 chr1 + 168190254-168195754 168195254
CELSR2 1952 1 chr1 + 109787640-109793140 109792640
MFAP2 4237 2 chr1 - 17306673-17313081 17307173
ANKRD24 170961 1 chr19 + 4178350-4183850 4183350
DNAJC18 202052 1 chr5 - 138774714-138780214 138775214
ARHGEF18 23370 1 chr19 + 7454998-7460498 7459998
C9orf72 203228 1 chr9 - 27572991-27578864 27573491
AP5B1 91056 2 chr11 - 65547562-65553062 65548062
GGA1 26088 2 chr22 + 37999480-38005546 38005046
CYP3A7 1551 1 chr7 - 99332319-99337819 99332819
RTBDN 83546 1 chr19 - 12940730-12951242 12941230
MAPK3 5595 1 chr16 - 30134130-30139630 30134630
FAM176A 84141 1 chr2 - 75796348-75801848 75796848
RPL4 6124 1 chr15 - 66796693-66802193 66797193
TRIM58 25893 1 chr1 + 248015500-248021000 248020500
ERF 2077 1 chr19 - 42758809-42764309 42759309
CCDC60 160777 1 chr12 + 119767516-119773016 119772516
MPHOSPH9 10198 1 chr12 - 123705941-123711441 123706441
GYS1 2997 1 chr19 - 49496110-49501610 49496610
GET4 51608 2 chr7 + 911190-916690 916190
EHBP1L1 254102 1 chr11 + 65338508-65344008 65343508
HEBP2 23593 1 chr6 + 138720335-138725835 138725335
TRAF7 84231 1 chr16 + 2200798-2206298 2205798
KIAA0895L 653319 1 chr16 - 67217383-67222883 67217883
C1orf174 339448 1 chr1 - 3816357-3821857 3816857
SLC25A5 292 1 chrX + 118597362-118602862 118602362
MT1A 4489 1 chr16 + 56667577-56673077 56672577
KIAA0895 23366 1 chr7 - 36429234-36434734 36429734
CIB1 10519 1 chr15 - 90776779-90782279 90777279
PYROXD2 84795 2 chr10 - 100174478-100179978 100174978
MRPL54 116541 2 chr19 + 3757664-3763164 3762664
FUZ 80199 1 chr19 - 50316067-50321567 50316567
NAGA 4668 1 chr22 - 42466346-42471846 42466846
SCIMP 388325 1 chr17 - 5137655-5143155 5138155
ADAMTSL2 9719 2 chr9 + 136392285-136400474 136399974
CTBP1 1487 2 chr4 - 1242408-1247908 1242908
RPL22 6146 2 chr1 - 6259179-6264679 6259679
TSNAXIP1 55815 1 chr16 + 67836009-67841509 67841009
HSPA2 3306 1 chr14 + 65002185-65007685 65007185
FAM19A2 338811 1 chr12 - 62586120-62591620 62586620
TNFRSF1A 7132 2 chr12 - 6450783-6456283 6451283
RASGRP1 10125 1 chr15 - 38856507-38862007 38857007
SLC4A7 9497 1 chr3 - 27525411-27530911 27525911
ANKRD2 26287 1 chr10 + 99327255-99332755 99332255
KDM4C 23081 1 chr9 + 6715862-6721362 6720862
VPS37B 79720 1 chr12 - 123380212-123385712 123380712
KDM2A 22992 1 chr11 + 66881739-66887239 66886739
BAHCC1 57597 1 chr17 + 79368539-79374039 79373539
IL7 3574 1 chr8 - 79717258-79722758 79717758
MRGPRF 116535 1 chr11 - 68780350-68785850 68780850
KDELC2 143888 1 chr11 - 108368659-108374159 108369159
SP1 6667 1 chr12 + 53768978-53774927 53774427
AJUBA 84962 1 chr14 - 23445932-23456848 23446432
TCAIM 285343 1 chr3 + 44374610-44380443 44379943
GSDMD 79792 1 chr8 + 144630556-144640976 144640476
LCLAT1 253558 1 chr2 + 30665122-30670636 30670136
FAM216A 29902 1 chr12 + 110901231-110906731 110906231
ANLN 54443 1 chr7 + 36424431-36429931 36429431
C6orf223 221416 1 chr6 + 43963336-43968836 43968336
FGFR2 2263 1 chr10 - 123352981-123362972 123353481
BSPRY 54836 2 chr9 + 116106811-116112311 116111811
FAM100A 124402 1 chr16 - 4664427-4669927 4664927
FKBP14 55033 2 chr7 - 30065917-30071417 30066417
ERGIC3 51614 1 chr20 + 34124777-34130277 34129777
RCC2 55920 1 chr1 - 17764559-17771250 17765059
KCNAB2 8514 1 chr1 + 6047357-6052857 6052357
TPGS1 91978 2 chr19 + 502496-507996 507496
FAM109B 150368 1 chr22 + 42465254-42470754 42470254
MMP23B 8510 1 chr1 + 1562559-1568059 1567559
KIT 3815 1 chr4 + 55519094-55524594 55524094
BZRAP1 9256 1 chr17 - 56405652-56411152 56406152
IL11 3589 1 chr19 - 55881331-55886831 55881831
GJB4 127534 2 chr1 + 35220341-35225841 35225341
DDIT4 54541 2 chr10 + 74028676-74034176 74033676
RAB8A 4218 1 chr19 + 16217489-16222989 16222489
PAPOLB 56903 1 chr7 - 4901125-4906625 4901625
NR2F2 7026 1 chr15 + 96864156-96874610 96874110
TFCP2 7024 1 chr12 - 51566426-51571926 51566926
PTER 9317 1 chr10 + 16473941-16479441 16478941
RNASE10 338879 1 chr14 + 20973630-20979130 20978630
DDHD2 23259 2 chr8 + 38084008-38089970 38089470
MFAP3L 9848 1 chr4 - 170946929-170952429 170947429
~ 100861540 1 chr7 - 99332319-99337819 99332819
ANXA2 302 1 chr15 - 60689685-60695185 60690185
HYAL2 8692 1 chr3 - 50359781-50365281 50360281
OR10W1 81341 2 chr11 - 58035232-58040732 58035732
PLEKHA8 84725 2 chr7 + 30062976-30068476 30067976
LTBR 4055 1 chr12 + 6479533-6485033 6484533
OR2A2 442361 2 chr7 + 143801675-143807175 143806675
PSRC1 84722 2 chr1 - 109825290-109830790 109825790
ADAT3 113179 1 chr19 + 1900370-1905870 1905370
SCAMP4 113178 1 chr19 + 1900372-1905872 1905372
GPN3 51184 1 chr12 - 110905589-110911526 110906089
NDUFA6 4700 1 chr22 - 42486388-42491888 42486888
PRKAG1 5571 1 chr12 - 49412031-49417629 49412531
ITM2C 81618 1 chr2 + 231724620-231730120 231729620
TGM2 7052 1 chr20 - 36793200-36798700 36793700
STARD6 147323 2 chr18 - 51880443-51885943 51880943
KREMEN1 83999 2 chr22 + 29464065-29469565 29469065
C16orf74 404550 1 chr16 - 85784189-85789689 85784689
RANBP17 64901 2 chr5 + 170283895-170289395 170288895
PTGER1 5731 2 chr19 - 14585674-14591174 14586174
ATP6V1H 51606 1 chr8 - 54755102-54760871 54755602
GIMAP8 155038 1 chr7 + 150142961-150148461 150147961
C4orf6 10141 1 chr4 + 5521882-5527382 5526882
PIK3R3 8503 1 chr1 - 46597880-46603708 46598380
RAD18 56852 2 chr3 - 9004659-9010159 9005159
MPDZ 8777 2 chr9 - 13279063-13284563 13279563
FAM110B 90362 1 chr8 + 58902112-58907612 58907112
SFXN5 94097 2 chr2 - 73298465-73303965 73298965
NXNL2 158046 2 chr9 + 91145015-91150515 91150015
ATP13A3 79572 2 chr3 - 194188468-194193968 194188968
ANKHD1 54882 1 chr5 + 139776398-139781898 139781398
ZWILCH 55055 1 chr15 + 66792430-66797930 66797430
SPAG9 9043 2 chr17 - 49197726-49203226 49198226
SNX1 6642 1 chr15 + 64383082-64388582 64388082
E2F2 1870 1 chr1 - 23857212-23862712 23857712
E2F3 1871 1 chr6 + 20397136-20404533 20404033
RPL32 6161 2 chr3 - 12881449-12888081 12881949
ZC3H11A 9877 1 chr1 + 203759750-203765250 203764750
RHEB 6009 1 chr7 - 151216510-151222010 151217010
ANKRD28 23243 2 chr3 - 15900553-15906053 15901053
PIK3R5 23533 1 chr17 - 8868529-8874029 8869029
RUVBL2 10856 1 chr19 + 49492155-49497655 49497155
ECI1 1632 1 chr16 - 2301102-2306602 2301602
FAM89B 23625 1 chr11 + 65334819-65340319 65339819
ECHDC3 79746 2 chr10 + 11779355-11784855 11784355
GRB10 2887 2 chr7 - 50860659-50866159 50861159
PPP2R3C 55012 2 chr14 - 35591019-35596519 35591519
HUS1 3364 2 chr7 - 48018722-48024222 48019222
NEFM 4741 1 chr8 + 24766273-24772954 24772454
IFNGR1 3459 2 chr6 - 137540067-137545567 137540567
CILP2 148113 1 chr19 + 19644073-19649573 19649073
STC2 8614 2 chr5 - 172756006-172761506 172756506
GAPVD1 26130 2 chr9 + 128019110-128024610 128024110
FAM96A 84191 1 chr15 - 64385707-64391207 64386207
PI4KA 5297 1 chr22 - 21212600-21218100 21213100
CDKN2D 1032 1 chr19 - 10679131-10684655 10679631
TAS2R5 54429 1 chr7 + 141485016-141490516 141490016
RAB1A 5861 1 chr2 - 65356935-65362435 65357435
TRAPPC6A 79090 1 chr19 - 45681001-45686501 45681501
VPREB1 7441 2 chr22 + 22594199-22599699 22599199
CHMP6 79643 2 chr17 + 78960640-78966140 78965640
TMEM86B 255043 2 chr19 - 55740132-55745632 55740632
TRIM55 84675 1 chr8 + 67034277-67039777 67039277
NINL 22981 1 chr20 - 25565653-25571153 25566153
~ 200373 1 chr2 + 120297007-120302507 120302007
DEPDC5 9681 1 chr22 + 32144936-32151347 32150847
ESRP2 80004 2 chr16 - 68269636-68275136 68270136
BRI3 25798 2 chr7 + 97905978-97911478 97910978
TUSC2 11334 1 chr3 - 50365168-50370668 50365668
AGAP3 116988 2 chr7 + 150778825-150784325 150783825
C3orf67 200844 2 chr3 - 59035215-59040715 59035715
JUN 3725 2 chr1 - 59249285-59254785 59249785
VGLL3 389136 2 chr3 - 87039757-87045257 87040257
MYBL2 4605 1 chr20 + 42290708-42296208 42295708
HOXA11 3207 1 chr7 - 27224335-27229835 27224835
TPM1 7168 1 chr15 + 63329837-63335337 63334837
CTDNEP1 23399 1 chr17 - 7154495-7160259 7154995
C18orf54 162681 2 chr18 + 51880170-51885670 51885170
SALL1 6299 2 chr16 - 51184008-51190183 51184508
PLD6 201164 1 chr17 - 17109146-17114646 17109646
ATP2C1 27032 2 chr3 + 130564368-130569868 130569368
SNED1 25992 2 chr2 + 241933254-241938754 241938254
GDPGP1 390637 1 chr15 + 90772486-90777986 90777486
TPD52L1 7164 2 chr6 + 125469878-125475919 125475419
RAPGEF1 2889 2 chr9 - 134612425-134617925 134612925
LGALS8 3964 1 chr1 + 236676513-236687526 236687026
KIAA2018 205717 1 chr3 - 113414993-113420493 113415493
THTPA 79178 1 chr14 + 24020197-24025697 24025197
C9orf89 84270 2 chr9 + 95853449-95858949 95858449
POLDIP3 84271 1 chr22 - 43010462-43015962 43010962
SLMO2 51012 2 chr20 - 57617401-57622901 57617901
ZBED6 100381270 1 chr1 + 203761650-203767150 203766650
SIX1 6495 2 chr14 - 61115655-61121155 61116155
SLC2A6 11182 1 chr9 - 136343776-136349276 136344276
SNAP29 9342 1 chr22 + 21208291-21213791 21213291
NMRK1 54981 1 chr9 - 77702633-77708133 77703133
CKS1B 1163 1 chr1 + 154942117-154947617 154947117
SIPA1 6494 2 chr11 + 65400577-65408091 65407591
CALML4 91860 1 chr15 - 68497948-68503448 68498448
TMUB1 83590 2 chr7 - 150779913-150785620 150780413
SCAF1 58506 1 chr19 + 50140381-50145881 50145381
CLN3 1201 2 chr16 - 28502903-28508623 28503403
C16orf5 29965 1 chr16 - 4587971-4593816 4588471
RRAS 6237 1 chr19 - 50142900-50148400 50143400
CPSF1 29894 1 chr8 - 145634233-145639733 145634733
PCNP 57092 1 chr3 + 101288041-101293541 101293041
PRR14L 253143 1 chr22 - 32145620-32151120 32146120
KCNJ4 3761 1 chr22 - 38850705-38856205 38851205
TBX1 6899 1 chr22 + 19739225-19744725 19744225
ZNF79 7633 2 chr9 + 130181652-130187152 130186652
DTX4 23220 1 chr11 + 58934811-58940311 58939811
ZNF516 9658 1 chr18 - 74206646-74212146 74207146
ARRDC2 27106 1 chr19 + 18106943-18112443 18111943
TRIOBP 11078 1 chr22 + 38087994-38093494 38092994
C9orf40 55071 1 chr9 - 77567302-77572802 77567802
NDUFA2 4695 1 chr5 - 140026870-140032370 140027370
NUCB2 4925 2 chr11 + 17293285-17298785 17298285
METRN 79006 1 chr16 + 760172-765672 765172
NDUFS7 374291 1 chr19 + 1378882-1384382 1383882
MTHFD2L 441024 1 chr4 + 75018828-75024328 75023828
NAPB 63908 1 chr20 - 23401656-23407156 23402156
ZFPM1 161882 1 chr16 + 88515013-88520513 88520013
JAZF1 221895 1 chr7 - 28219937-28225437 28220437
ZNF587B 84914 1 chr19 + 58356180-58361680 58361180
NES 10763 1 chr1 - 156646689-156652189 156647189
C17orf58 284018 1 chr17 - 65989265-65994765 65989765
LIF 3976 2 chr22 - 30642340-30647840 30642840
DNAAF2 55172 1 chr14 - 50101448-50106948 50101948
~ 400658 1 chr18 + 74202476-74207976 74207476
BLOC1S3 388552 1 chr19 + 45677002-45682502 45682002
WDR35 57539 2 chr2 - 20189384-20194884 20189884
CCND2 894 1 chr12 + 4377901-4383401 4382901
RCVRN 5957 2 chr17 - 9808184-9813684 9808684
CCND3 896 1 chr6 - 42016110-42021610 42016610
SIRT6 51548 1 chr19 - 4182096-4187596 4182596
GPX4 2879 2 chr19 + 1098935-1105148 1104648
PMPCB 9512 2 chr7 + 102932872-102938372 102937872
ID1 3397 1 chr20 + 30188085-30193585 30193085
FAM46A 55603 1 chr6 - 82461928-82467428 82462428
CSRNP1 64651 2 chr3 - 39194602-39200102 39195102
ELP5 23587 1 chr17 + 7150371-7156050 7155550
SYT15 83849 2 chr10 - 46970101-46975601 46970601
PTTG1IP 754 2 chr21 - 46293318-46298818 46293818
PKP2 5318 1 chr12 - 33049280-33054780 33049780
CLEC10A 10462 2 chr17 - 6983100-6988600 6983600
HTR3D 200909 1 chr3 + 183744331-183751118 183750618
ZFHX2 85446 1 chr14 - 24020358-24025858 24020858
NPHP4 261734 1 chr1 - 6052033-6057533 6052533
CYP2E1 1571 1 chr10 + 135335866-135341366 135340866
MXRA8 54587 2 chr1 - 1293415-1298915 1293915
SNX22 79856 2 chr15 + 64438915-64444415 64443915
ILVBL 10994 2 chr19 - 15236077-15241577 15236577
RELA 5970 1 chr11 - 65429943-65435443 65430443
EVPL 2125 1 chr17 - 74023007-74028507 74023507
CYB5R1 51706 1 chr1 - 202935904-202941404 202936404
FILIP1L 11259 2 chr3 - 99832849-99838349 99833349
PIK3IP1 113791 1 chr22 - 31688020-31693520 31688520
ADAMTS14 140766 1 chr10 + 72427558-72433058 72432558
DACH1 1602 2 chr13 - 72440830-72446330 72441330
SHC1 6464 1 chr1 - 154942723-154951959 154943223
LIMD1 8994 2 chr3 + 45631322-45636822 45636322
CD80 941 1 chr3 - 119277981-119283481 119278481
CLDN7 1366 1 chr17 - 7165764-7171512 7166264
SCNN1A 6337 1 chr12 - 6483890-6491523 6484390
JDP2 122953 1 chr14 + 75889508-75899336 75898836
SNX16 64089 1 chr8 - 82754021-82759521 82754521
BCL10 8915 1 chr1 - 85742087-85747587 85742587
MUC4 4585 1 chr3 - 195538344-195543844 195538844
NR2C1 7181 3 chr12 - 95466904-95472404 95467404
NR2C2 7182 2 chr3 + 14984235-14989735 14989235
KIAA0391 9692 2 chr14 + 35586526-35592257 35591757
THADA 63892 1 chr2 - 43822613-43828185 43823113
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