Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GPN3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51184 GPN-loop GTPase 3 chr12 - 110905589 - 110911526 110906089 Transcription Factor Binding Sites   Download all TFBS in the GPN3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX - 110907735 110907745 4.0E-06 TAGGTGTAAAA 11 Myc_MA0147.1 JASPAR - 110906318 110906327 4.0E-06 AGCACGTGGC 10 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 110907210 110907227 8.0E-06 CCGGTTCAACTGGGGGCA 18 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 110905802 110905818 8.0E-06 AACAACAACAAAAAAGA 17 Rxra_nuclearreceptor_DBD_dimeric_12_1 SELEX + 110906885 110906896 6.0E-06 GGGTCGTGAGCC 12 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 110906256 110906270 6.0E-06 ATGCTGTCTAAGCTT 15 Pax4_MA0068.1 JASPAR - 110907285 110907314 1.0E-05 AAAAGAAAAAAAAAGAAAAAGAAATCCCCG 30 SP1_MA0079.2 JASPAR + 110906520 110906529 3.0E-06 CCCCTCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 110906688 110906697 9.0E-06 AGCAGCTGTC 10 znf143_MA0088.1 JASPAR - 110906674 110906693 4.0E-06 GCTGTCCCAGCATCCCTCCC 20 TFCP2_CP2_full_dimeric_10_1 SELEX + 110907239 110907248 6.0E-06 AAACCAGTTC 10 Mycn_MA0104.2 JASPAR - 110906318 110906327 2.0E-06 AGCACGTGGC 10 TBX2_TBX_full_monomeric_11_1 SELEX - 110907735 110907745 9.0E-06 TAGGTGTAAAA 11 MAFK_bZIP_full_monomeric_12_1 SELEX + 110906384 110906395 2.0E-06 AAATGTGCTGAG 12 IRF3_IRF_full_trimeric_21_1 SELEX + 110905410 110905430 2.0E-06 TGAGAACTGAAAGAGAAATGA 21 NRF1_NRF_full_dimeric_12_1 SELEX + 110906215 110906226 4.0E-06 TGCGCGTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 110906215 110906226 3.0E-06 TGCGCACGCGCA 12 V_FOXP1_01_M00987 TRANSFAC - 110905799 110905818 2.0E-06 TCTTTTTTGTTGTTGTTTTG 20 V_FOXP1_01_M00987 TRANSFAC + 110907292 110907311 1.0E-06 TTCTTTTTCTTTTTTTTTCT 20 V_FOXP1_01_M00987 TRANSFAC + 110907298 110907317 5.0E-06 TTCTTTTTTTTTCTTTTCTT 20 V_FOXP1_01_M00987 TRANSFAC + 110907302 110907321 0.0E+00 TTTTTTTTCTTTTCTTTCTT 20 V_TCF3_01_M01594 TRANSFAC + 110907295 110907307 3.0E-06 TTTTTCTTTTTTT 13 V_TCF3_01_M01594 TRANSFAC + 110907314 110907326 6.0E-06 TCTTTCTTGTTTT 13 V_ZFP410_04_M02936 TRANSFAC - 110906187 110906203 2.0E-06 TCGCCCCTCCCCTTTTT 17 V_HMGIY_Q3_M01010 TRANSFAC + 110907290 110907304 8.0E-06 ATTTCTTTTTCTTTT 15 V_EVI1_04_M00081 TRANSFAC - 110907291 110907305 6.0E-06 AAAAAGAAAAAGAAA 15 V_EVI1_04_M00081 TRANSFAC - 110907297 110907311 1.0E-06 AGAAAAAAAAAGAAA 15 V_EVI1_04_M00081 TRANSFAC - 110907302 110907316 1.0E-06 AGAAAAGAAAAAAAA 15 V_BCL6_01_M01183 TRANSFAC + 110907298 110907313 7.0E-06 TTCTTTTTTTTTCTTT 16 V_BCL6_01_M01183 TRANSFAC + 110907303 110907318 1.0E-06 TTTTTTTCTTTTCTTT 16 V_IK_Q5_M01169 TRANSFAC - 110907568 110907577 3.0E-06 TTTGGGAGGC 10 V_RELBP52_01_M01239 TRANSFAC + 110907286 110907295 8.0E-06 GGGGATTTCT 10 V_FOXJ1_04_M02854 TRANSFAC + 110905801 110905815 5.0E-06 AAACAACAACAAAAA 15 V_EOMES_03_M02747 TRANSFAC - 110907732 110907748 9.0E-06 AAATAGGTGTAAAAACC 17 V_IRF_Q6_01_M00972 TRANSFAC + 110905412 110905422 6.0E-06 AGAACTGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC - 110907290 110907300 9.0E-06 GAAAAAGAAAT 11 V_IRF_Q6_01_M00972 TRANSFAC - 110907296 110907306 6.0E-06 AAAAAAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 110905410 110905425 5.0E-06 TGAGAACTGAAAGAGA 16 V_IRF2_Q6_M01882 TRANSFAC - 110907293 110907308 6.0E-06 AAAAAAAAGAAAAAGA 16 V_NKX25_Q6_M02108 TRANSFAC - 110906949 110906959 5.0E-06 CTCACTTGAGG 11 V_POU1F1_Q6_M00744 TRANSFAC + 110906440 110906449 8.0E-06 ATGTATATTT 10 V_FOXO3A_Q1_M01137 TRANSFAC - 110907317 110907328 8.0E-06 AAAAAACAAGAA 12 V_SP1_03_M02281 TRANSFAC + 110906520 110906529 3.0E-06 CCCCTCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC - 110907582 110907591 7.0E-06 CGTAATCCCA 10 V_PPAR_DR1_Q2_M00763 TRANSFAC + 110906348 110906360 9.0E-06 AGACGTTTGACCT 13 V_PU1_Q4_M01172 TRANSFAC + 110907289 110907307 4.0E-06 GATTTCTTTTTCTTTTTTT 19 V_PU1_Q4_M01172 TRANSFAC + 110907308 110907326 7.0E-06 TTCTTTTCTTTCTTGTTTT 19 V_ZFP281_05_M02935 TRANSFAC - 110907215 110907231 6.0E-06 TGGATGCCCCCAGTTGA 17 V_LYF1_01_M00141 TRANSFAC - 110907569 110907577 9.0E-06 TTTGGGAGG 9 V_AP4_Q6_01_M00927 TRANSFAC + 110905986 110905994 6.0E-06 ACCAGCTGC 9 V_TCFAP2E_04_M02926 TRANSFAC - 110907300 110907313 6.0E-06 AAAGAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 110907301 110907314 1.0E-06 AAAAGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 110907302 110907315 2.0E-06 GAAAAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 110907311 110907324 5.0E-06 AACAAGAAAGAAAA 14 V_PAX5_02_M00144 TRANSFAC + 110905811 110905838 9.0E-06 AAAAAAGAACGTGAAGCCAGACAGCAGA 28 V_MYC_01_M02250 TRANSFAC - 110906318 110906327 4.0E-06 AGCACGTGGC 10 V_ELF4_04_M02850 TRANSFAC - 110907316 110907332 1.0E-05 TCTCAAAAAACAAGAAA 17 V_ZFP105_03_M02827 TRANSFAC + 110905801 110905815 2.0E-06 AAACAACAACAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 110905805 110905819 1.0E-06 AACAACAAAAAAGAA 15 V_ZFP105_03_M02827 TRANSFAC - 110907292 110907306 7.0E-06 AAAAAAGAAAAAGAA 15 V_ZFP105_03_M02827 TRANSFAC - 110907295 110907309 3.0E-06 AAAAAAAAAGAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 110907298 110907312 2.0E-06 AAGAAAAAAAAAGAA 15 V_ZFP105_03_M02827 TRANSFAC - 110907317 110907331 1.0E-06 CTCAAAAAACAAGAA 15 Hand1_Tcfe2a_MA0092.1 JASPAR + 110906396 110906405 7.0E-06 GATCTGGAAT 10 V_ZBP89_Q4_M01816 TRANSFAC + 110906521 110906530 4.0E-06 CCCTCCCCCA 10 V_FOXK1_04_M02856 TRANSFAC + 110905800 110905814 0.0E+00 AAAACAACAACAAAA 15 MYC_MAX_MA0059.1 JASPAR - 110906318 110906328 3.0E-06 AAGCACGTGGC 11 V_IRF_Q6_M00772 TRANSFAC - 110905412 110905426 1.0E-06 TTCTCTTTCAGTTCT 15 V_IRF_Q6_M00772 TRANSFAC - 110905811 110905825 6.0E-06 TTCACGTTCTTTTTT 15 V_IRF_Q6_M00772 TRANSFAC + 110907292 110907306 1.0E-06 TTCTTTTTCTTTTTT 15 V_IRF_Q6_M00772 TRANSFAC + 110907302 110907316 5.0E-06 TTTTTTTTCTTTTCT 15 V_LXR_DR4_Q3_M00766 TRANSFAC - 110907212 110907227 5.0E-06 TGCCCCCAGTTGAACC 16 V_NKX25_Q5_M01043 TRANSFAC - 110906951 110906960 3.0E-06 TCTCACTTGA 10 V_SOX12_04_M02900 TRANSFAC - 110907290 110907305 1.0E-06 AAAAAGAAAAAGAAAT 16 V_GRE_C_M00205 TRANSFAC - 110907153 110907168 6.0E-06 TGGACACACAGTCCTG 16 V_OCAB_Q6_M02113 TRANSFAC - 110906377 110906387 0.0E+00 ATTTGCAAATC 11 V_VMYB_01_M00003 TRANSFAC + 110906283 110906292 3.0E-06 AATAACGGAC 10 V_STAF_02_M00264 TRANSFAC - 110906672 110906692 6.0E-06 CTGTCCCAGCATCCCTCCCCC 21 V_MYCN_01_M02259 TRANSFAC - 110906318 110906327 2.0E-06 AGCACGTGGC 10 V_BRACH_01_M00150 TRANSFAC - 110907733 110907756 6.0E-06 TATCTAGGAAATAGGTGTAAAAAC 24 V_HIC1_02_M01072 TRANSFAC + 110905963 110905977 9.0E-06 TCCCGCTGCCCGCGG 15 V_SOX11_03_M02795 TRANSFAC + 110905803 110905819 4.0E-06 ACAACAACAAAAAAGAA 17 V_NR1B1_Q6_M02110 TRANSFAC - 110906353 110906362 9.0E-06 ACAGGTCAAA 10 V_FOXO1_Q5_M01216 TRANSFAC - 110907319 110907327 8.0E-06 AAAAACAAG 9 V_GATA4_Q3_M00632 TRANSFAC + 110906184 110906195 9.0E-06 AGAAAAAAGGGG 12 V_SP4_Q5_M01273 TRANSFAC + 110906519 110906529 5.0E-06 GCCCCTCCCCC 11 V_MTF1_06_M02882 TRANSFAC - 110907293 110907306 1.0E-06 AAAAAAGAAAAAGA 14 V_MTF1_06_M02882 TRANSFAC - 110907300 110907313 2.0E-06 AAAGAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 110907303 110907316 1.0E-06 AGAAAAGAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 110907312 110907325 6.0E-06 AAACAAGAAAGAAA 14 V_FAC1_01_M00456 TRANSFAC + 110905802 110905815 0.0E+00 AACAACAACAAAAA 14 V_TAL1_01_M01591 TRANSFAC - 110907190 110907202 3.0E-06 CTTCCTCCTCTGT 13 V_TAL1_01_M01591 TRANSFAC + 110907306 110907318 5.0E-06 TTTTCTTTTCTTT 13 V_GATA1_04_M00128 TRANSFAC + 110906293 110906305 4.0E-06 AACAGATAAAGCT 13 V_DR1_Q3_M00762 TRANSFAC - 110906348 110906360 9.0E-06 AGGTCAAACGTCT 13 NR1H2_RXRA_MA0115.1 JASPAR - 110906346 110906362 5.0E-06 ACAGGTCAAACGTCTGC 17 V_SMAD3_03_M02794 TRANSFAC + 110905822 110905838 1.0E-06 TGAAGCCAGACAGCAGA 17 V_SMAD3_03_M02794 TRANSFAC - 110907139 110907155 4.0E-06 CTGTGCCAGACAGCAAA 17 V_ZFP206_01_M01742 TRANSFAC + 110906215 110906225 7.0E-06 TGCGCGTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 110906216 110906226 3.0E-06 TGCGCACGCGC 11 V_NRF1_Q6_M00652 TRANSFAC + 110906217 110906226 6.0E-06 CGCGTGCGCA 10 V_P53_01_M00034 TRANSFAC + 110906728 110906747 9.0E-06 GGAGATGCCCGGCCAGGGTC 20 V_P53_01_M00034 TRANSFAC - 110906728 110906747 8.0E-06 GACCCTGGCCGGGCATCTCC 20 V_ZFP281_01_M01597 TRANSFAC - 110906520 110906530 1.0E-06 TGGGGGAGGGG 11 V_IRF1_Q6_01_M01881 TRANSFAC + 110907294 110907307 7.0E-06 CTTTTTCTTTTTTT 14 V_ZFP281_04_M02831 TRANSFAC + 110906518 110906532 1.0E-06 TGCCCCTCCCCCACC 15 V_SRF_06_M02916 TRANSFAC - 110907291 110907307 1.0E-05 AAAAAAAGAAAAAGAAA 17 V_SRF_06_M02916 TRANSFAC - 110907292 110907308 9.0E-06 AAAAAAAAGAAAAAGAA 17 V_SRF_06_M02916 TRANSFAC - 110907297 110907313 2.0E-06 AAAGAAAAAAAAAGAAA 17 V_SRF_06_M02916 TRANSFAC - 110907298 110907314 1.0E-06 AAAAGAAAAAAAAAGAA 17 V_SRF_06_M02916 TRANSFAC - 110907299 110907315 2.0E-06 GAAAAGAAAAAAAAAGA 17 V_SRF_06_M02916 TRANSFAC - 110907301 110907317 7.0E-06 AAGAAAAGAAAAAAAAA 17 V_FOXO1_01_M00473 TRANSFAC - 110907319 110907328 5.0E-06 AAAAAACAAG 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 110906519 110906532 0.0E+00 GGTGGGGGAGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 110906190 110906202 5.0E-06 AAGGGGAGGGGCG 13 V_PAX4_04_M00380 TRANSFAC - 110907276 110907305 9.0E-06 AAAAAGAAAAAGAAATCCCCGTTTGACAGG 30 V_NANOG_02_M01247 TRANSFAC - 110907290 110907309 1.0E-06 AAAAAAAAAGAAAAAGAAAT 20 V_NANOG_02_M01247 TRANSFAC - 110907294 110907313 8.0E-06 AAAGAAAAAAAAAGAAAAAG 20 V_NANOG_02_M01247 TRANSFAC - 110907295 110907314 6.0E-06 AAAAGAAAAAAAAAGAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 110907300 110907319 2.0E-06 GAAAGAAAAGAAAAAAAAAG 20 V_NANOG_02_M01247 TRANSFAC - 110907305 110907324 6.0E-06 AACAAGAAAGAAAAGAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 110907309 110907328 2.0E-06 AAAAAACAAGAAAGAAAAGA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.