Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RANBP17 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 64901 RAN binding protein 17 chr5 + 170283895 - 170289395 170288895 Transcription Factor Binding Sites   Download all TFBS in the RANBP17 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 170289766 170289783 7.0E-06 TCAGCAAACATTTATTAT 18 RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 170288717 170288730 0.0E+00 GAGGTCATGACCCA 14 RXRG_nuclearreceptor_full_dimeric_14_2 SELEX - 170288717 170288730 1.0E-06 TGGGTCATGACCTC 14 VSX1_homeodomain_full_monomeric_11_1 SELEX - 170289575 170289585 9.0E-06 GGCCAATTAAA 11 SOX4_HMG_DBD_dimeric_16_1 SELEX - 170290945 170290960 5.0E-06 GAGAAATTTCAGTTTT 16 IRF7_IRF_DBD_dimeric_14_1 SELEX + 170290943 170290956 1.0E-05 AAAAAACTGAAATT 14 PROX1_PROX_DBD_dimeric_12_1 SELEX + 170290757 170290768 5.0E-06 GAAGACTTCTTC 12 ESR2_MA0258.1 JASPAR + 170289052 170289069 1.0E-06 CCAGGTCAGTGTGCTCTG 18 RXRA_nuclearreceptor_full_dimeric_14_2 SELEX + 170288717 170288730 0.0E+00 GAGGTCATGACCCA 14 RXRA_nuclearreceptor_full_dimeric_14_2 SELEX - 170288717 170288730 0.0E+00 TGGGTCATGACCTC 14 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 170288783 170288796 2.0E-06 GGACACGCCCCTAT 14 Rxra_nuclearreceptor_DBD_dimeric_12_1 SELEX + 170288718 170288729 0.0E+00 AGGTCATGACCC 12 Rxra_nuclearreceptor_DBD_dimeric_12_1 SELEX - 170288718 170288729 0.0E+00 GGGTCATGACCT 12 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 170288696 170288709 7.0E-06 TGTGTCAAAGGGCA 14 SOX8_HMG_full_dimeric_15_1 SELEX - 170290945 170290959 3.0E-06 AGAAATTTCAGTTTT 15 EWSR1-FLI1_MA0149.1 JASPAR - 170289450 170289467 4.0E-06 GGAAGGCGGGAAGGCTGC 18 EWSR1-FLI1_MA0149.1 JASPAR - 170289454 170289471 6.0E-06 GGCGGGAAGGCGGGAAGG 18 POU1F1_POU_DBD_monomeric_14_1 SELEX - 170290971 170290984 5.0E-06 TATATGCTAAAAAG 14 NFKB1_MA0105.1 JASPAR + 170292755 170292765 3.0E-06 GGGGGTTTCCC 11 EBF1_MA0154.1 JASPAR + 170290304 170290313 5.0E-06 ACCCCAGGGA 10 KLF13_C2H2_full_monomeric_18_1 SELEX + 170288782 170288799 1.0E-06 AGGACACGCCCCTATCGG 18 MSX1_homeodomain_full_monomeric_8_1 SELEX - 170289576 170289583 7.0E-06 CCAATTAA 8 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 170289768 170289781 0.0E+00 AGCAAACATTTATT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 170289768 170289781 2.0E-06 AATAAATGTTTGCT 14 Pax4_MA0068.1 JASPAR - 170290686 170290715 0.0E+00 GAAAAAATTCCAAAGTTCCACCATACCTTT 30 NR2F1_MA0017.1 JASPAR + 170290697 170290710 6.0E-06 GGAACTTTGGAATT 14 TEAD1_TEA_full_monomeric_10_1 SELEX + 170290849 170290858 3.0E-06 TACATTCCAA 10 MSX2_homeodomain_DBD_monomeric_8_1 SELEX - 170289576 170289583 7.0E-06 CCAATTAA 8 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 170289295 170289310 8.0E-06 CCCCGCCCCCTCCACC 16 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 170289574 170289584 8.0E-06 GCCAATTAAAG 11 Ar_MA0007.1 JASPAR - 170290219 170290240 3.0E-06 TGCAGTACACCATGTTCTTCCA 22 Ar_MA0007.1 JASPAR + 170290220 170290241 4.0E-06 GGAAGAACATGGTGTACTGCAG 22 POU3F3_POU_DBD_monomeric_13_1 SELEX - 170290972 170290984 7.0E-06 TATATGCTAAAAA 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 170289768 170289781 1.0E-06 AGCAAACATTTATT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 170289768 170289781 2.0E-06 AATAAATGTTTGCT 14 RELA_MA0107.1 JASPAR + 170292755 170292764 9.0E-06 GGGGGTTTCC 10 RAX_homeodomain_DBD_monomeric_10_1 SELEX - 170289575 170289584 8.0E-06 GCCAATTAAA 10 ESR1_MA0112.2 JASPAR + 170289049 170289068 9.0E-06 CTTCCAGGTCAGTGTGCTCT 20 ESR1_MA0112.2 JASPAR - 170289054 170289073 3.0E-06 GGCGCAGAGCACACTGACCT 20 RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX + 170288717 170288730 0.0E+00 GAGGTCATGACCCA 14 RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX - 170288717 170288730 0.0E+00 TGGGTCATGACCTC 14 SP1_MA0079.2 JASPAR - 170289301 170289310 7.0E-06 CCCCGCCCCC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 170288710 170288724 8.0E-06 GAGGTTGGAGGTCAT 15 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 170289768 170289781 6.0E-06 AGCAAACATTTATT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 170289768 170289781 8.0E-06 AATAAATGTTTGCT 14 znf143_MA0088.1 JASPAR - 170290208 170290227 1.0E-06 GTTCTTCCACAATTCTTTGC 20 SP4_C2H2_full_monomeric_17_1 SELEX + 170288781 170288797 3.0E-06 GAGGACACGCCCCTATC 17 SP4_C2H2_full_monomeric_17_1 SELEX + 170288862 170288878 9.0E-06 CCAGCCCCGCCCCTCCA 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 170290222 170290238 0.0E+00 AAGAACATGGTGTACTG 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 170290222 170290238 0.0E+00 CAGTACACCATGTTCTT 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 170288696 170288709 9.0E-06 TGTGTCAAAGGGCA 14 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 170288710 170288723 9.0E-06 GAGGTTGGAGGTCA 14 BSX_homeodomain_DBD_monomeric_8_1 SELEX - 170289576 170289583 7.0E-06 CCAATTAA 8 POU3F1_POU_DBD_monomeric_12_1 SELEX - 170290972 170290983 7.0E-06 ATATGCTAAAAA 12 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 170290850 170290857 1.0E-05 ACATTCCA 8 IRF9_IRF_full_trimeric_15_1 SELEX + 170290942 170290956 7.0E-06 AAAAAAACTGAAATT 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 170289768 170289781 6.0E-06 AGCAAACATTTATT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 170289768 170289781 9.0E-06 AATAAATGTTTGCT 14 Msx3_homeodomain_DBD_monomeric_8_1 SELEX - 170289576 170289583 7.0E-06 CCAATTAA 8 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 170289575 170289584 6.0E-06 GCCAATTAAA 10 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 170290849 170290858 8.0E-06 TACATTCCAA 10 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 170290222 170290238 0.0E+00 AAGAACATGGTGTACTG 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 170290222 170290238 0.0E+00 CAGTACACCATGTTCTT 17 AR_nuclearreceptor_full_dimeric_17_1 SELEX + 170290222 170290238 0.0E+00 AAGAACATGGTGTACTG 17 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 170290222 170290238 1.0E-06 CAGTACACCATGTTCTT 17 SOX9_HMG_full_dimeric_17_1 SELEX - 170290944 170290960 6.0E-06 GAGAAATTTCAGTTTTT 17 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX + 170288717 170288730 0.0E+00 GAGGTCATGACCCA 14 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX - 170288717 170288730 0.0E+00 TGGGTCATGACCTC 14 V_CEBPG_Q6_M00622 TRANSFAC + 170290801 170290813 4.0E-06 CTGATGTCAAAAC 13 RXR_RAR_DR5_MA0159.1 JASPAR + 170290726 170290742 7.0E-06 AGGTGATGTACAGTTAA 17 V_NFKB_Q6_01_M00774 TRANSFAC - 170292754 170292769 7.0E-06 TTTTGGGAAACCCCCA 16 V_AR_02_M00953 TRANSFAC + 170290217 170290243 8.0E-06 TGTGGAAGAACATGGTGTACTGCAGAA 27 V_AR_02_M00953 TRANSFAC - 170290217 170290243 2.0E-06 TTCTGCAGTACACCATGTTCTTCCACA 27 V_ESR1_01_M02261 TRANSFAC + 170289049 170289068 9.0E-06 CTTCCAGGTCAGTGTGCTCT 20 V_ESR1_01_M02261 TRANSFAC - 170289054 170289073 3.0E-06 GGCGCAGAGCACACTGACCT 20 V_ZFX_01_M01593 TRANSFAC + 170289143 170289158 1.0E-05 GCGGAGGCCGCAGGGC 16 V_HMGIY_Q3_M01010 TRANSFAC + 170290702 170290716 0.0E+00 TTTGGAATTTTTTCA 15 V_NKX29_01_M01352 TRANSFAC - 170290857 170290873 1.0E-06 TGTGAAGTACTTATGTT 17 V_NKX29_01_M01352 TRANSFAC + 170290858 170290874 7.0E-06 ACATAAGTACTTCACAG 17 V_HOXA13_02_M01297 TRANSFAC + 170290911 170290919 9.0E-06 AAATAAAAG 9 V_AR_Q6_01_M01996 TRANSFAC - 170290222 170290236 0.0E+00 GTACACCATGTTCTT 15 V_AR_Q6_01_M01996 TRANSFAC + 170290224 170290238 7.0E-06 GAACATGGTGTACTG 15 V_RELBP52_01_M01239 TRANSFAC + 170292755 170292764 3.0E-06 GGGGGTTTCC 10 V_SP1_Q6_01_M00931 TRANSFAC - 170288845 170288854 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 170288865 170288874 4.0E-06 GGGGCGGGGC 10 V_IRF_Q6_01_M00972 TRANSFAC + 170290945 170290955 2.0E-06 AAAACTGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC + 170290943 170290958 5.0E-06 AAAAAACTGAAATTTC 16 V_HNF4_Q6_M00967 TRANSFAC - 170289569 170289577 2.0E-06 AAAGTCCAA 9 V_OCT1_01_M00135 TRANSFAC - 170290969 170290987 5.0E-06 TCCTATATGCTAAAAAGAA 19 V_EAR2_Q2_M01728 TRANSFAC - 170288703 170288716 7.0E-06 CAACCTCTGCCCTT 14 V_FOXJ1_03_M02750 TRANSFAC - 170290926 170290941 6.0E-06 CTAGTCAACAAAACTG 16 V_SP1_03_M02281 TRANSFAC - 170289301 170289310 7.0E-06 CCCCGCCCCC 10 V_PPAR_DR1_Q2_M00763 TRANSFAC - 170288697 170288709 7.0E-06 TGCCCTTTGACAC 13 V_COUPTF_Q6_M01036 TRANSFAC - 170292700 170292722 2.0E-06 TCTTGTGGACTCTGCCCTCTAAT 23 V_ZFP281_05_M02935 TRANSFAC - 170292749 170292765 3.0E-06 GGGAAACCCCCAAACTT 17 V_LYF1_01_M00141 TRANSFAC - 170292760 170292768 9.0E-06 TTTGGGAAA 9 V_TCFAP2E_04_M02926 TRANSFAC - 170290707 170290720 9.0E-06 TGTATGAAAAAATT 14 V_TCFAP2E_04_M02926 TRANSFAC + 170290936 170290949 3.0E-06 GACTAGAAAAAAAC 14 V_AR_03_M00956 TRANSFAC - 170290217 170290243 2.0E-06 TTCTGCAGTACACCATGTTCTTCCACA 27 V_PPARGRXRA_01_M02262 TRANSFAC + 170288695 170288709 3.0E-06 TTGTGTCAAAGGGCA 15 V_BACH1_01_M00495 TRANSFAC + 170288653 170288667 8.0E-06 CTTATGAGTCAGGGT 15 V_GC_01_M00255 TRANSFAC - 170288797 170288810 8.0E-06 ACGGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC - 170288843 170288856 3.0E-06 ACGGGGCGGGGCTG 14 V_GC_01_M00255 TRANSFAC - 170288863 170288876 1.0E-06 GAGGGGCGGGGCTG 14 V_POU3F2_01_M00463 TRANSFAC + 170290704 170290717 5.0E-06 TGGAATTTTTTCAT 14 V_PR_01_M00954 TRANSFAC - 170290217 170290243 5.0E-06 TTCTGCAGTACACCATGTTCTTCCACA 27 V_COUP_01_M00158 TRANSFAC + 170290697 170290710 6.0E-06 GGAACTTTGGAATT 14 V_STAF_01_M00262 TRANSFAC - 170290205 170290226 6.0E-06 TTCTTCCACAATTCTTTGCCTT 22 V_SP4_03_M02810 TRANSFAC - 170289296 170289312 7.0E-06 TCCCCCGCCCCCTCCAC 17 V_KROX_Q6_M00982 TRANSFAC - 170289296 170289309 2.0E-06 CCCGCCCCCTCCAC 14 V_SP1_Q6_M00196 TRANSFAC - 170288798 170288810 3.0E-06 ACGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 170288824 170288836 4.0E-06 ACGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 170288844 170288856 3.0E-06 ACGGGGCGGGGCT 13 V_SP1_Q6_M00196 TRANSFAC - 170288864 170288876 2.0E-06 GAGGGGCGGGGCT 13 V_MAZ_Q6_01_M02023 TRANSFAC + 170290308 170290321 3.0E-06 CAGGGAGGGAAGGG 14 V_REST_01_M01256 TRANSFAC - 170289127 170289148 4.0E-06 CTCCGCCGCTGTCCTCGGCCCT 22 V_PAX6_Q2_M00979 TRANSFAC - 170289047 170289060 1.0E-06 CTGACCTGGAAGTG 14 V_AR_04_M01201 TRANSFAC + 170290223 170290237 0.0E+00 AGAACATGGTGTACT 15 V_AR_04_M01201 TRANSFAC - 170290223 170290237 2.0E-06 AGTACACCATGTTCT 15 V_SP1SP3_Q4_M01219 TRANSFAC - 170289298 170289308 1.0E-06 CCGCCCCCTCC 11 V_ERALPHA_01_M01801 TRANSFAC + 170289054 170289068 8.0E-06 AGGTCAGTGTGCTCT 15 V_ERALPHA_01_M01801 TRANSFAC - 170289054 170289068 7.0E-06 AGAGCACACTGACCT 15 V_AP1_C_M00199 TRANSFAC + 170288656 170288664 3.0E-06 ATGAGTCAG 9 V_EBF1_01_M02267 TRANSFAC + 170290304 170290313 5.0E-06 ACCCCAGGGA 10 V_VMYB_01_M00003 TRANSFAC - 170289757 170289766 1.0E-06 AATAACTGAA 10 V_E2F_Q4_02_M00939 TRANSFAC + 170289416 170289424 6.0E-06 TTTGGCGCG 9 V_NKX23_01_M01457 TRANSFAC + 170290858 170290873 4.0E-06 ACATAAGTACTTCACA 16 V_NKX23_01_M01457 TRANSFAC - 170290858 170290873 5.0E-06 TGTGAAGTACTTATGT 16 V_HOXD9_Q2_M01834 TRANSFAC + 170290909 170290918 8.0E-06 ACAAATAAAA 10 V_SP4_Q5_M01273 TRANSFAC + 170288799 170288809 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 170288825 170288835 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 170288845 170288855 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 170288865 170288875 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC - 170289301 170289311 5.0E-06 CCCCCGCCCCC 11 V_CIZ_01_M00734 TRANSFAC - 170290707 170290715 5.0E-06 GAAAAAATT 9 V_OCT2_01_M01368 TRANSFAC - 170290970 170290985 6.0E-06 CTATATGCTAAAAAGA 16 V_NKX3A_02_M01383 TRANSFAC - 170290857 170290873 2.0E-06 TGTGAAGTACTTATGTT 17 V_NKX3A_02_M01383 TRANSFAC + 170290858 170290874 5.0E-06 ACATAAGTACTTCACAG 17 V_TEF1_Q6_03_M01817 TRANSFAC + 170290831 170290839 9.0E-06 CAGGAATGT 9 V_TEF1_Q6_03_M01817 TRANSFAC - 170290876 170290884 9.0E-06 CAGGAATGT 9 V_TCF7_04_M02921 TRANSFAC - 170290707 170290721 9.0E-06 ATGTATGAAAAAATT 15 V_NKX22_01_M00485 TRANSFAC + 170290860 170290869 3.0E-06 ATAAGTACTT 10 V_ZABC1_01_M01306 TRANSFAC + 170290852 170290859 1.0E-05 ATTCCAAC 8 V_TBP_04_M02918 TRANSFAC - 170290887 170290901 5.0E-06 CGCTTTTAAGCTGTC 15 V_E2F_Q3_01_M00918 TRANSFAC + 170289416 170289424 6.0E-06 TTTGGCGCG 9 V_E2F_Q4_01_M00919 TRANSFAC - 170289415 170289425 8.0E-06 GCGCGCCAAAG 11 V_RXR_RAR_01_M02272 TRANSFAC + 170290726 170290742 7.0E-06 AGGTGATGTACAGTTAA 17 V_IRF1_Q6_01_M01881 TRANSFAC - 170290944 170290957 0.0E+00 AAATTTCAGTTTTT 14 V_EWSR1FLI1_01_M02252 TRANSFAC - 170289450 170289467 4.0E-06 GGAAGGCGGGAAGGCTGC 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 170289454 170289471 6.0E-06 GGCGGGAAGGCGGGAAGG 18 V_FOXJ2_01_M00422 TRANSFAC + 170289763 170289780 1.0E-06 TATTCAGCAAACATTTAT 18 V_IPF1_Q4_01_M01013 TRANSFAC - 170289572 170289586 8.0E-06 TGGCCAATTAAAGTC 15 V_SOX12_03_M02796 TRANSFAC - 170287994 170288007 7.0E-06 TCATTGTTTCTATT 14 V_SP1_Q2_01_M00933 TRANSFAC + 170288866 170288875 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC - 170289301 170289310 4.0E-06 CCCCGCCCCC 10 V_MAFK_04_M02880 TRANSFAC - 170290701 170290715 7.0E-06 GAAAAAATTCCAAAG 15 V_SOX5_07_M02909 TRANSFAC + 170290209 170290225 8.0E-06 CAAAGAATTGTGGAAGA 17 V_SP1_Q4_01_M00932 TRANSFAC - 170288798 170288810 2.0E-06 ACGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 170288824 170288836 4.0E-06 ACGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC - 170288844 170288856 3.0E-06 ACGGGGCGGGGCT 13 V_SP1_Q4_01_M00932 TRANSFAC - 170288864 170288876 3.0E-06 GAGGGGCGGGGCT 13 V_ZID_01_M00085 TRANSFAC + 170289484 170289496 0.0E+00 CGGCTCTATCGTC 13 V_TCF3_05_M02920 TRANSFAC - 170290967 170290981 4.0E-06 ATGCTAAAAAGAATT 15 V_AR_01_M00481 TRANSFAC + 170290223 170290237 1.0E-06 AGAACATGGTGTACT 15 V_AR_01_M00481 TRANSFAC - 170290223 170290237 0.0E+00 AGTACACCATGTTCT 15 V_AR_Q2_M00447 TRANSFAC - 170290223 170290237 0.0E+00 AGTACACCATGTTCT 15 PPARG_RXRA_MA0065.2 JASPAR + 170288695 170288709 3.0E-06 TTGTGTCAAAGGGCA 15 V_ESR2_01_M02377 TRANSFAC + 170289052 170289069 1.0E-06 CCAGGTCAGTGTGCTCTG 18 V_TR4_03_M01782 TRANSFAC + 170288711 170288723 5.0E-06 AGGTTGGAGGTCA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.