Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

XXYLT1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 152002 xyloside xylosyltransferase 1 chr3 - 194991395 - 194996895 194991895 Transcription Factor Binding Sites   Download all TFBS in the XXYLT1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 194990727 194990740 3.0E-06 GGGTTCATGACCCT 14 RXRG_nuclearreceptor_full_dimeric_14_2 SELEX - 194990727 194990740 0.0E+00 AGGGTCATGAACCC 14 POU4F2_POU_full_monomeric_16_1 SELEX - 194991058 194991073 9.0E-06 CTGCGTTTTTAATGAC 16 CTCF_MA0139.1 JASPAR + 194992397 194992415 2.0E-06 TGGCCAGCAGGGGGCCCCC 19 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 194991058 194991067 9.0E-06 GTCATTAAAA 10 Foxa2_MA0047.2 JASPAR - 194992689 194992700 2.0E-06 TGTTTACTTAAA 12 E2F3_E2F_DBD_dimeric_18_2 SELEX + 194992087 194992104 5.0E-06 AGAAATGGCGCCCTACGC 18 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 194991058 194991067 5.0E-06 GTCATTAAAA 10 ZNF306_C2H2_full_monomeric_14_1 SELEX - 194992669 194992682 0.0E+00 TGGTATAGCCTCAA 14 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX + 194991057 194991068 3.0E-06 GGTCATTAAAAA 12 TBR1_TBX_DBD_monomeric_10_1 SELEX - 194992511 194992520 7.0E-06 AAGTGTTAAA 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 194991113 194991123 2.0E-06 GACACGCCCCC 11 FOXA1_MA0148.1 JASPAR - 194992690 194992700 3.0E-06 TGTTTACTTAA 11 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 194992511 194992523 5.0E-06 ATAAAGTGTTAAA 13 RXRA_nuclearreceptor_full_dimeric_14_2 SELEX + 194990727 194990740 0.0E+00 GGGTTCATGACCCT 14 RXRA_nuclearreceptor_full_dimeric_14_2 SELEX - 194990727 194990740 0.0E+00 AGGGTCATGAACCC 14 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 194991890 194991903 6.0E-06 GGCCCCGCCCCTTT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 194992689 194992701 6.0E-06 TTTAAGTAAACAC 13 Rxra_nuclearreceptor_DBD_dimeric_12_1 SELEX + 194990728 194990739 1.0E-06 GGTTCATGACCC 12 Rxra_nuclearreceptor_DBD_dimeric_12_1 SELEX - 194990728 194990739 1.0E-06 GGGTCATGAACC 12 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 194992566 194992575 6.0E-06 GGCACGTGAC 10 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 194992691 194992701 8.0E-06 TAAGTAAACAC 11 GATA5_GATA_DBD_monomeric_8_1 SELEX + 194990772 194990779 7.0E-06 AGATAAGA 8 HOXC11_homeodomain_full_monomeric_11_1 SELEX + 194991057 194991067 9.0E-06 GGTCATTAAAA 11 GATA4_GATA_DBD_monomeric_8_1 SELEX + 194990772 194990779 7.0E-06 AGATAAGA 8 RHOXF1_homeodomain_full_dimeric_9_1 SELEX + 194992847 194992855 6.0E-06 GGATTATCC 9 RHOXF1_homeodomain_full_dimeric_9_1 SELEX - 194992847 194992855 3.0E-06 GGATAATCC 9 EOMES_TBX_DBD_monomeric_13_1 SELEX - 194992509 194992521 8.0E-06 AAAGTGTTAAAAG 13 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 194991058 194991067 2.0E-06 GTCATTAAAA 10 MYBL2_MYB_DBD_monomeric_11_1 SELEX - 194992806 194992816 3.0E-06 AAAACCGTTTA 11 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 194992566 194992575 5.0E-06 GGCACGTGAC 10 MNT_bHLH_DBD_dimeric_10_1 SELEX + 194992697 194992706 6.0E-06 AACACGTGCA 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 194991057 194991067 1.0E-05 GGTCATTAAAA 11 RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX + 194990727 194990740 0.0E+00 GGGTTCATGACCCT 14 RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX - 194990727 194990740 0.0E+00 AGGGTCATGAACCC 14 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 194992566 194992575 8.0E-06 GGCACGTGAC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 194991889 194991905 5.0E-06 GCGGCCCCGCCCCTTTC 17 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX + 194991057 194991067 4.0E-06 GGTCATTAAAA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 194992690 194992700 7.0E-06 TTAAGTAAACA 11 GATA3_GATA_full_monomeric_8_1 SELEX + 194990772 194990779 7.0E-06 AGATAAGA 8 TBX2_TBX_full_monomeric_11_1 SELEX - 194992511 194992521 4.0E-06 AAAGTGTTAAA 11 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX + 194991057 194991068 8.0E-06 GGTCATTAAAAA 12 E2F1_E2F_DBD_monomeric_14_2 SELEX + 194992089 194992102 4.0E-06 AAATGGCGCCCTAC 14 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 194991058 194991067 4.0E-06 GTCATTAAAA 10 TBX20_TBX_DBD_monomeric_15_1 SELEX - 194992510 194992524 3.0E-06 GATAAAGTGTTAAAA 15 MYBL1_MYB_DBD_monomeric_11_1 SELEX - 194992806 194992816 2.0E-06 AAAACCGTTTA 11 FOXC1_MA0032.1 JASPAR + 194992744 194992751 7.0E-06 AGTAAGTA 8 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 194991057 194991067 3.0E-06 GGTCATTAAAA 11 Sox2_MA0143.1 JASPAR + 194992490 194992504 3.0E-06 CTTTTGTTTTATAAA 15 DPRX_homeodomain_DBD_monomeric_11_1 SELEX - 194992846 194992856 6.0E-06 TGGATAATCCA 11 E2F1_E2F_DBD_dimeric_12_1 SELEX + 194992090 194992101 8.0E-06 AATGGCGCCCTA 12 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 194992566 194992575 4.0E-06 GGCACGTGAC 10 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 194992691 194992701 1.0E-05 TAAGTAAACAC 11 DPRX_homeodomain_DBD_monomeric_10_1 SELEX + 194992845 194992854 6.0E-06 ATGGATTATC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 194992566 194992575 6.0E-06 GGCACGTGAC 10 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 194991057 194991067 6.0E-06 GGTCATTAAAA 11 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX + 194990727 194990740 0.0E+00 GGGTTCATGACCCT 14 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX - 194990727 194990740 0.0E+00 AGGGTCATGAACCC 14 V_CEBPG_Q6_M00622 TRANSFAC - 194992686 194992698 7.0E-06 TTTACTTAAAAAC 13 V_AP2ALPHA_Q6_M01857 TRANSFAC - 194991538 194991548 9.0E-06 AGCCCCCGGCG 11 V_STAT5A_Q6_M01890 TRANSFAC + 194992656 194992668 2.0E-06 AGTCTTCTAAGAA 13 V_DEC2_Q2_M01843 TRANSFAC + 194992565 194992574 9.0E-06 GGTCACGTGC 10 V_OBOX5_05_M03066 TRANSFAC - 194992209 194992225 9.0E-06 TGCAGAGATTAAAGTTT 17 V_XFD1_01_M00267 TRANSFAC + 194992691 194992704 8.0E-06 TAAGTAAACACGTG 14 V_GATA2_02_M00348 TRANSFAC + 194990770 194990779 5.0E-06 GGAGATAAGA 10 V_EVI1_04_M00081 TRANSFAC - 194992815 194992829 8.0E-06 GGAAATAACAGGAAA 15 V_MMEF2_Q6_M00405 TRANSFAC - 194992492 194992507 5.0E-06 CTGTTTATAAAACAAA 16 V_STAT_Q6_M00777 TRANSFAC + 194992237 194992249 3.0E-06 TCAATTTCTTGGA 13 V_IK_Q5_M01169 TRANSFAC + 194992028 194992037 5.0E-06 GTTGGGAGGG 10 V_SP1_Q6_01_M00931 TRANSFAC + 194991893 194991902 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 194991942 194991951 4.0E-06 GGGGCGGGGC 10 V_EOMES_03_M02747 TRANSFAC - 194992508 194992524 2.0E-06 GATAAAGTGTTAAAAGT 17 V_SRY_02_M00160 TRANSFAC - 194992489 194992500 3.0E-06 TAAAACAAAAGT 12 V_AP4_Q6_M00176 TRANSFAC - 194991088 194991097 2.0E-06 CTCAGCTGGT 10 V_GABPA_04_M02858 TRANSFAC - 194990744 194990759 0.0E+00 CCTTTTTCCCCTTCCT 16 V_GABPA_04_M02858 TRANSFAC + 194992226 194992241 5.0E-06 CCTTTTTTCCCTCAAT 16 V_STAT5B_01_M00459 TRANSFAC - 194992657 194992671 9.0E-06 CAATTCTTAGAAGAC 15 V_FOXJ1_03_M02750 TRANSFAC + 194992497 194992512 4.0E-06 TTTATAAACAGACTTT 16 V_STAT6_01_M00494 TRANSFAC + 194992823 194992830 7.0E-06 TATTTCCA 8 V_PU1_Q4_M01172 TRANSFAC + 194990683 194990701 0.0E+00 AGCTTTCTCTTCCTCATTC 19 V_HOXD13_01_M01404 TRANSFAC - 194992492 194992507 7.0E-06 CTGTTTATAAAACAAA 16 V_CDX_Q5_M00991 TRANSFAC + 194992499 194992516 1.0E-06 TATAAACAGACTTTTAAC 18 V_PAX5_02_M00144 TRANSFAC - 194990667 194990694 8.0E-06 GAAGAGAAAGCTCAAGAGGAACAGATAT 28 V_ELF4_04_M02850 TRANSFAC - 194992489 194992505 4.0E-06 GTTTATAAAACAAAAGT 17 V_HMBOX1_01_M01456 TRANSFAC - 194992625 194992641 7.0E-06 TTTATCTAGTTAGCAGT 17 V_GC_01_M00255 TRANSFAC + 194991891 194991904 0.0E+00 AAGGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC + 194991940 194991953 4.0E-06 GAGGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC - 194992310 194992323 8.0E-06 AAAGGGAGGAGCTG 14 V_SOX7_03_M02807 TRANSFAC - 194992483 194992504 2.0E-06 TTTATAAAACAAAAGTGGATGA 22 V_OBOX5_02_M01480 TRANSFAC - 194992209 194992225 9.0E-06 TGCAGAGATTAAAGTTT 17 V_ZFP105_03_M02827 TRANSFAC - 194992490 194992504 9.0E-06 TTTATAAAACAAAAG 15 V_GFI1_01_M00250 TRANSFAC + 194992208 194992231 6.0E-06 AAAACTTTAATCTCTGCACCTTTT 24 V_GATA3_05_M02859 TRANSFAC + 194990656 194990677 9.0E-06 CTCCCCAGATCATATCTGTTCC 22 V_NFAT_Q6_M00302 TRANSFAC - 194992812 194992823 7.0E-06 AACAGGAAAAAC 12 V_IRF2_01_M00063 TRANSFAC + 194992179 194992191 1.0E-05 CAAAAGCGAAGCT 13 V_HOXB9_01_M01426 TRANSFAC + 194991055 194991070 6.0E-06 GCGGTCATTAAAAACG 16 V_SP1_Q6_M00196 TRANSFAC + 194991891 194991903 1.0E-06 AAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 194991940 194991952 1.0E-06 GAGGGGCGGGGCC 13 V_HNF3A_01_M01261 TRANSFAC + 194992692 194992701 3.0E-06 AAGTAAACAC 10 V_MAZ_Q6_01_M02023 TRANSFAC + 194992029 194992042 2.0E-06 TTGGGAGGGGGGGA 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 194992690 194992700 5.0E-06 TGTTTACTTAA 11 V_MATH1_Q2_M01716 TRANSFAC - 194991087 194991096 6.0E-06 TCAGCTGGTG 10 V_REST_01_M01256 TRANSFAC - 194991690 194991711 9.0E-06 CCCTGCTGCTGGCCGCGGCGCT 22 V_IRF3_06_M02871 TRANSFAC - 194992221 194992234 5.0E-06 GAAAAAAGGTGCAG 14 V_OCT1_04_M00138 TRANSFAC - 194992493 194992515 1.0E-05 TTAAAAGTCTGTTTATAAAACAA 23 V_AP4_Q5_M00175 TRANSFAC - 194991088 194991097 1.0E-06 CTCAGCTGGT 10 V_SOX12_04_M02900 TRANSFAC + 194992726 194992741 0.0E+00 AAATAGACAAAGAACT 16 V_BBX_04_M02843 TRANSFAC - 194992505 194992521 5.0E-06 AAAGTGTTAAAAGTCTG 17 V_KLF7_03_M02773 TRANSFAC - 194991890 194991905 2.0E-06 GCGGCCCCGCCCCTTT 16 V_XFD2_01_M00268 TRANSFAC + 194992497 194992510 1.0E-06 TTTATAAACAGACT 14 V_NKX3A_01_M00451 TRANSFAC + 194992688 194992699 8.0E-06 TTTTAAGTAAAC 12 V_TCF1_07_M02919 TRANSFAC + 194992841 194992854 5.0E-06 TTGCATGGATTATC 14 V_TBP_06_M02814 TRANSFAC - 194992493 194992508 5.0E-06 TCTGTTTATAAAACAA 16 V_CTCF_02_M01259 TRANSFAC + 194992394 194992413 3.0E-06 ATGTGGCCAGCAGGGGGCCC 20 V_SOX11_03_M02795 TRANSFAC + 194992726 194992742 5.0E-06 AAATAGACAAAGAACTT 17 V_CTCF_01_M01200 TRANSFAC + 194991622 194991641 1.0E-05 TCAGCCTCTTGGTGGCGCTG 20 V_CTCF_01_M01200 TRANSFAC + 194992396 194992415 1.0E-06 GTGGCCAGCAGGGGGCCCCC 20 V_EVI1_06_M00011 TRANSFAC + 194992632 194992640 7.0E-06 ACTAGATAA 9 V_GATA4_Q3_M00632 TRANSFAC - 194992780 194992791 3.0E-06 AGAAATCAGAGA 12 V_GATA4_Q3_M00632 TRANSFAC - 194992816 194992827 6.0E-06 AAATAACAGGAA 12 V_NEUROD_02_M01288 TRANSFAC - 194991698 194991709 6.0E-06 CTGCTGCTGGCC 12 V_SP4_Q5_M01273 TRANSFAC - 194991892 194991902 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC - 194991941 194991951 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC - 194992814 194992825 2.0E-06 ATAACAGGAAAA 12 V_HBP1_04_M02866 TRANSFAC + 194992825 194992841 4.0E-06 TTTCCACATTGTAAGGT 17 V_FXR_IR1_Q6_M00767 TRANSFAC + 194990727 194990739 1.0E-05 GGGTTCATGACCC 13 V_IPF1_05_M01255 TRANSFAC + 194991057 194991068 1.0E-06 GGTCATTAAAAA 12 V_CNOT3_01_M01253 TRANSFAC + 194991900 194991909 4.0E-06 GGCCGCGCCG 10 V_FOXL1_02_M02857 TRANSFAC - 194992489 194992504 1.0E-06 TTTATAAAACAAAAGT 16 V_SIRT6_01_M01797 TRANSFAC + 194990772 194990779 7.0E-06 AGATAAGA 8 V_FOXL1_04_M02753 TRANSFAC + 194992495 194992511 1.0E-05 GTTTTATAAACAGACTT 17 V_GATA3_02_M00350 TRANSFAC + 194990770 194990779 5.0E-06 GGAGATAAGA 10 V_NANOG_01_M01123 TRANSFAC - 194992339 194992350 4.0E-06 CGGGCCATTTCC 12 V_TFIIA_Q6_M00707 TRANSFAC + 194991990 194992001 8.0E-06 TATTAGAGGAGG 12 V_TCF7_04_M02921 TRANSFAC + 194992493 194992507 3.0E-06 TTGTTTTATAAACAG 15 V_NRSF_01_M00256 TRANSFAC + 194991687 194991707 1.0E-06 GCCAGCGCCGCGGCCAGCAGC 21 V_FOXO3_01_M00477 TRANSFAC - 194992691 194992704 5.0E-06 CACGTGTTTACTTA 14 V_FOXA2_03_M02260 TRANSFAC - 194992689 194992700 2.0E-06 TGTTTACTTAAA 12 V_PLZF_02_M01075 TRANSFAC + 194992683 194992711 6.0E-06 GTAGTTTTTAAGTAAACACGTGCAAGTGC 29 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 194992560 194992574 4.0E-06 GCCGAGGTCACGTGC 15 V_SOX2_01_M02246 TRANSFAC + 194992490 194992504 3.0E-06 CTTTTGTTTTATAAA 15 V_GATA2_03_M00349 TRANSFAC - 194990665 194990674 7.0E-06 ACAGATATGA 10 V_SRF_06_M02916 TRANSFAC - 194992489 194992505 5.0E-06 GTTTATAAAACAAAAGT 17 V_HFH3_01_M00289 TRANSFAC - 194992691 194992703 5.0E-06 ACGTGTTTACTTA 13 V_VDR_Q3_M00444 TRANSFAC + 194990749 194990763 2.0E-06 GGGGAAAAAGGGACA 15 V_SP1_Q2_01_M00933 TRANSFAC - 194991892 194991901 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC - 194991941 194991950 7.0E-06 CCCCGCCCCT 10 V_SP1_Q4_01_M00932 TRANSFAC + 194991891 194991903 0.0E+00 AAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 194991940 194991952 2.0E-06 GAGGGGCGGGGCC 13 V_GFI1_Q6_01_M02010 TRANSFAC + 194992781 194992790 2.0E-06 CTCTGATTTC 10 V_TAACC_B_M00331 TRANSFAC + 194992163 194992185 5.0E-06 AGGAACTTAGGTTAGCCAAAAGC 23 V_NANOG_02_M01247 TRANSFAC - 194992485 194992504 0.0E+00 TTTATAAAACAAAAGTGGAT 20 V_GATA1_06_M00347 TRANSFAC + 194992633 194992642 3.0E-06 CTAGATAAAA 10 V_HOXC9_01_M01416 TRANSFAC + 194991054 194991069 1.0E-06 GGCGGTCATTAAAAAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.