Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

NEFM


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
4741 neurofilament, medium polypeptide chr8 +24766273 - 24772954 24772454

Transcription Factor Binding Sites

 
Download all TFBS in the NEFM promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 24772597 24772610 5.0E-06 AGGGTCTTGACCTT 14
RXRG_nuclearreceptor_full_dimeric_14_2 SELEX - 24772597 24772610 1.0E-05 AAGGTCAAGACCCT 14
Sox1_HMG_DBD_dimeric_14_1 SELEX + 24771128 24771141 3.0E-06 TGAATCACCGTTCA 14
RXRA_nuclearreceptor_full_dimeric_14_2 SELEX + 24772597 24772610 3.0E-06 AGGGTCTTGACCTT 14
RXRA_nuclearreceptor_full_dimeric_14_2 SELEX - 24772597 24772610 3.0E-06 AAGGTCAAGACCCT 14
FOXL1_forkhead_full_dimeric_13_1 SELEX + 24770449 24770461 4.0E-06 TTTATACAAATAA 13
Rxra_nuclearreceptor_DBD_dimeric_12_1 SELEX + 24772598 24772609 9.0E-06 GGGTCTTGACCT 12
TBP_MA0108.2 JASPAR - 24770441 24770455 6.0E-06 GTATAAAAAGTGGGA 15
TBP_MA0108.2 JASPAR + 24771242 24771256 8.0E-06 CTATAAATGGGCTGC 15
EWSR1-FLI1_MA0149.1 JASPAR + 24770603 24770620 2.0E-06 GAAGGGGAGGGAGGCAAG 18
EWSR1-FLI1_MA0149.1 JASPAR + 24770607 24770624 7.0E-06 GGGAGGGAGGCAAGAAAA 18
EWSR1-FLI1_MA0149.1 JASPAR + 24770608 24770625 2.0E-06 GGAGGGAGGCAAGAAAAG 18
EWSR1-FLI1_MA0149.1 JASPAR + 24770643 24770660 7.0E-06 GAAAAGAGGGAATGCAAG 18
EWSR1-FLI1_MA0149.1 JASPAR - 24771146 24771163 6.0E-06 GGGAGGAGGGGAGGGGGG 18
POU3F3_POU_DBD_monomeric_13_1 SELEX + 24770449 24770461 9.0E-06 TTTATACAAATAA 13
HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 24768820 24768829 9.0E-06 GAAAATTAAC 10
RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX + 24772597 24772610 8.0E-06 AGGGTCTTGACCTT 14
RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX - 24772597 24772610 7.0E-06 AAGGTCAAGACCCT 14
SP1_MA0079.2 JASPAR - 24770634 24770643 3.0E-06 CCCCTCCCCC 10
SP1_MA0079.2 JASPAR - 24771057 24771066 3.0E-06 CCCCTCCCCC 10
SP1_MA0079.2 JASPAR + 24771153 24771162 9.0E-06 CCCCTCCTCC 10
FOXI1_MA0042.1 JASPAR - 24770452 24770463 5.0E-06 AGTTATTTGTAT 12
Myf_MA0055.1 JASPAR - 24770574 24770585 2.0E-06 AAGCAGCTGGAG 12
Rhox11_homeodomain_DBD_monomeric_9_1 SELEX - 24768825 24768833 2.0E-06 TGCTGTTAA 9
REST_MA0138.2 JASPAR - 24770340 24770360 0.0E+00 GGCAGCACCAAGGACAGCGCC 21
RORA_1_MA0071.1 JASPAR - 24772604 24772613 4.0E-06 AAAAAGGTCA 10
FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 24770529 24770541 6.0E-06 AACAAAACAAAAA 13
Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 24770527 24770539 4.0E-06 CAAAACAAAAAAA 13
NFE2L2_MA0150.1 JASPAR - 24768789 24768799 3.0E-06 ATGACTCTGCA 11
RREB1_MA0073.1 JASPAR - 24770523 24770542 1.0E-06 AAACAAAACAAAAAAAAAGA 20
RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX + 24772597 24772610 3.0E-06 AGGGTCTTGACCTT 14
RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX - 24772597 24772610 3.0E-06 AAGGTCAAGACCCT 14
FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 24770526 24770539 4.0E-06 CAAAACAAAAAAAA 14
V_FOXP1_01_M00987 TRANSFAC + 24770523 24770542 2.0E-06 TCTTTTTTTTTGTTTTGTTT 20
V_FOXP1_01_M00987 TRANSFAC + 24770526 24770545 0.0E+00 TTTTTTTTGTTTTGTTTTGT 20
V_FOXP1_01_M00987 TRANSFAC + 24770528 24770547 0.0E+00 TTTTTTGTTTTGTTTTGTCT 20
V_KLF15_Q2_M01714 TRANSFAC - 24771148 24771161 4.0E-06 GAGGAGGGGAGGGG 14
V_FREAC7_01_M00293 TRANSFAC + 24770449 24770464 6.0E-06 TTTATACAAATAACTA 16
V_TCF3_01_M01594 TRANSFAC + 24770529 24770541 1.0E-06 TTTTTGTTTTGTT 13
V_XFD1_01_M00267 TRANSFAC - 24770225 24770238 3.0E-06 CGAGTAAATACAAT 14
V_NRSF_Q4_M01028 TRANSFAC + 24770341 24770359 0.0E+00 GCGCTGTCCTTGGTGCTGC 19
V_NRSF_Q4_M01028 TRANSFAC - 24771509 24771527 0.0E+00 CTGCTCTCGGCGGAGCTGA 19
V_HNF1_02_M01379 TRANSFAC - 24773315 24773331 6.0E-06 CCTGCTTTAACTTAAGT 17
V_HMGIY_Q3_M01010 TRANSFAC - 24768816 24768830 6.0E-06 TGTTAATTTTCTTTA 15
V_RORA1_01_M00156 TRANSFAC - 24772603 24772615 8.0E-06 TGAAAAAGGTCAA 13
V_BCL6_01_M01183 TRANSFAC + 24770528 24770543 0.0E+00 TTTTTTGTTTTGTTTT 16
V_MAFB_03_M02879 TRANSFAC - 24770446 24770460 8.0E-06 TATTTGTATAAAAAG 15
V_SP1_Q6_01_M00931 TRANSFAC + 24771208 24771217 4.0E-06 GGGGCGGGGC 10
V_NR2F2_03_M02783 TRANSFAC - 24772600 24772615 3.0E-06 TGAAAAAGGTCAAGAC 16
V_EGR_Q6_M00807 TRANSFAC - 24772567 24772577 7.0E-06 GTGGGGGCGGA 11
V_SRY_02_M00160 TRANSFAC - 24770528 24770539 3.0E-06 CAAAACAAAAAA 12
V_SRY_02_M00160 TRANSFAC - 24770533 24770544 8.0E-06 CAAAACAAAACA 12
V_HNF4_Q6_M00967 TRANSFAC + 24771083 24771091 1.0E-05 AAAGTCCAG 9
V_GCNF_Q3_M02009 TRANSFAC - 24772602 24772611 6.0E-06 AAAGGTCAAG 10
V_HNF3_Q6_01_M01012 TRANSFAC + 24770524 24770541 1.0E-06 CTTTTTTTTTGTTTTGTT 18
V_HNF3_Q6_01_M01012 TRANSFAC + 24770528 24770545 3.0E-06 TTTTTTGTTTTGTTTTGT 18
V_GABPA_04_M02858 TRANSFAC - 24770655 24770670 9.0E-06 CCTCCTTCCCCTTGCA 16
V_SP1_03_M02281 TRANSFAC - 24770634 24770643 3.0E-06 CCCCTCCCCC 10
V_SP1_03_M02281 TRANSFAC - 24771057 24771066 3.0E-06 CCCCTCCCCC 10
V_SP1_03_M02281 TRANSFAC + 24771153 24771162 9.0E-06 CCCCTCCTCC 10
V_E2A_Q2_M00804 TRANSFAC + 24772578 24772591 3.0E-06 CCACCTGCCCCAGC 14
V_TCFAP2E_04_M02926 TRANSFAC - 24770523 24770536 2.0E-06 AACAAAAAAAAAGA 14
V_TCFAP2E_04_M02926 TRANSFAC - 24770524 24770537 1.0E-05 AAACAAAAAAAAAG 14
V_TCFAP2E_04_M02926 TRANSFAC - 24770525 24770538 1.0E-06 AAAACAAAAAAAAA 14
V_NRSE_B_M00325 TRANSFAC - 24770340 24770360 1.0E-06 GGCAGCACCAAGGACAGCGCC 21
V_NRSE_B_M00325 TRANSFAC + 24771508 24771528 0.0E+00 CTCAGCTCCGCCGAGAGCAGC 21
V_HES1_Q6_M02011 TRANSFAC - 24772450 24772459 2.0E-06 GGCACGAGCC 10
V_TAL1_Q6_M00993 TRANSFAC + 24770575 24770584 3.0E-06 TCCAGCTGCT 10
V_ZNF219_01_M01122 TRANSFAC + 24771144 24771155 0.0E+00 CGCCCCCCTCCC 12
V_GC_01_M00255 TRANSFAC + 24771056 24771069 2.0E-06 TGGGGGAGGGGCTG 14
V_GC_01_M00255 TRANSFAC - 24772563 24772576 9.0E-06 TGGGGGCGGAGTGT 14
V_SOX7_03_M02807 TRANSFAC - 24770527 24770548 7.0E-06 AAGACAAAACAAAACAAAAAAA 22
V_MYF_01_M01302 TRANSFAC - 24770574 24770585 2.0E-06 AAGCAGCTGGAG 12
V_ZFP105_03_M02827 TRANSFAC - 24768654 24768668 1.0E-06 TACAAACAAAATAAG 15
V_ZFP105_03_M02827 TRANSFAC - 24770522 24770536 1.0E-06 AACAAAAAAAAAGAC 15
V_ZFP105_03_M02827 TRANSFAC - 24770525 24770539 8.0E-06 CAAAACAAAAAAAAA 15
V_ZFP105_03_M02827 TRANSFAC - 24770526 24770540 1.0E-06 ACAAAACAAAAAAAA 15
V_NKX31_02_M02782 TRANSFAC + 24773308 24773324 9.0E-06 TTCCACCACTTAAGTTA 17
V_SOX7_04_M02911 TRANSFAC + 24770219 24770240 5.0E-06 GTTTAAATTGTATTTACTCGGA 22
V_TATA_01_M00252 TRANSFAC - 24770441 24770455 6.0E-06 GTATAAAAAGTGGGA 15
V_TATA_01_M00252 TRANSFAC + 24771242 24771256 8.0E-06 CTATAAATGGGCTGC 15
V_HIC1_03_M01073 TRANSFAC + 24771165 24771182 8.0E-06 GACCGGTGCCCGCAGTCC 18
V_KROX_Q6_M00982 TRANSFAC + 24772567 24772580 3.0E-06 TCCGCCCCCACCCA 14
V_ZBP89_Q4_M01816 TRANSFAC - 24770633 24770642 4.0E-06 CCCTCCCCCA 10
V_ZBP89_Q4_M01816 TRANSFAC - 24771056 24771065 4.0E-06 CCCTCCCCCA 10
V_SP1_Q6_M00196 TRANSFAC + 24771056 24771068 8.0E-06 TGGGGGAGGGGCT 13
V_SP1_Q6_M00196 TRANSFAC + 24771206 24771218 3.0E-06 ACGGGGCGGGGCC 13
V_EVI1_01_M00078 TRANSFAC - 24770532 24770547 8.0E-06 AGACAAAACAAAACAA 16
V_MAZ_Q6_01_M02023 TRANSFAC - 24771149 24771162 0.0E+00 GGAGGAGGGGAGGG 14
V_MAZ_Q6_01_M02023 TRANSFAC - 24771152 24771165 6.0E-06 CGGGGAGGAGGGGA 14
V_HNF3_Q6_M00791 TRANSFAC - 24770527 24770539 8.0E-06 CAAAACAAAAAAA 13
V_HNF3ALPHA_Q6_M00724 TRANSFAC - 24770450 24770460 6.0E-06 TATTTGTATAA 11
V_SOX18_03_M02801 TRANSFAC + 24770221 24770236 6.0E-06 TTAAATTGTATTTACT 16
V_TATA_C_M00216 TRANSFAC - 24770447 24770456 7.0E-06 TGTATAAAAA 10
V_REST_01_M01256 TRANSFAC + 24770336 24770357 0.0E+00 CCTGGGCGCTGTCCTTGGTGCT 22
V_SOX12_04_M02900 TRANSFAC + 24770935 24770950 8.0E-06 ACAGTGACAAAGAAAG 16
V_MUSCLE_INI_B_M00321 TRANSFAC + 24772566 24772586 3.0E-06 CTCCGCCCCCACCCACCTGCC 21
V_CDC5_01_M00478 TRANSFAC - 24773317 24773328 3.0E-06 GCTTTAACTTAA 12
V_SMAD4_Q6_M00733 TRANSFAC - 24770310 24770324 5.0E-06 GAGGTGCAGCCACCC 15
V_SOX11_03_M02795 TRANSFAC - 24770525 24770541 1.0E-06 AACAAAACAAAAAAAAA 17
V_NR1B1_Q6_M02110 TRANSFAC - 24772602 24772611 3.0E-06 AAAGGTCAAG 10
V_CTCF_01_M01200 TRANSFAC - 24772475 24772494 4.0E-06 GCGGCCACCAGGGAGCGCGG 20
V_MZF1_02_M00084 TRANSFAC + 24770634 24770646 3.0E-06 GGGGGAGGGGAAA 13
V_FOXO1_Q5_M01216 TRANSFAC - 24770531 24770539 8.0E-06 CAAAACAAA 9
V_FOXO1_Q5_M01216 TRANSFAC - 24770536 24770544 8.0E-06 CAAAACAAA 9
V_MAF_Q6_01_M00983 TRANSFAC + 24768789 24768799 2.0E-06 TGCAGAGTCAT 11
V_IRF7_01_M00453 TRANSFAC + 24767702 24767719 0.0E+00 TACCAATTTGAAAGTGAC 18
V_IRF7_01_M00453 TRANSFAC + 24770997 24771014 7.0E-06 TGAGAAATGGAAAGAAGG 18
V_GATA4_Q3_M00632 TRANSFAC - 24773649 24773660 2.0E-06 ATATAACAGAGA 12
V_SP4_Q5_M01273 TRANSFAC - 24771057 24771067 5.0E-06 GCCCCTCCCCC 11
V_SP4_Q5_M01273 TRANSFAC - 24771207 24771217 2.0E-06 GCCCCGCCCCG 11
V_MTF1_06_M02882 TRANSFAC - 24770524 24770537 3.0E-06 AAACAAAAAAAAAG 14
V_MAZR_01_M00491 TRANSFAC + 24770634 24770646 1.0E-05 GGGGGAGGGGAAA 13
V_FAC1_01_M00456 TRANSFAC - 24770529 24770542 0.0E+00 AAACAAAACAAAAA 14
V_TCFE2A_03_M02823 TRANSFAC - 24773348 24773364 5.0E-06 ATAACCAGGTGCTGAGT 17
V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 24770628 24770636 8.0E-06 GAGGGTGGG 9
V_FOXL1_02_M02857 TRANSFAC - 24770523 24770538 1.0E-05 AAAACAAAAAAAAAGA 16
V_FOXL1_02_M02857 TRANSFAC - 24770528 24770543 0.0E+00 AAAACAAAACAAAAAA 16
V_FOXL1_02_M02857 TRANSFAC - 24770533 24770548 0.0E+00 AAGACAAAACAAAACA 16
V_FOXJ3_06_M02855 TRANSFAC - 24770528 24770544 0.0E+00 CAAAACAAAACAAAAAA 17
V_FOXJ3_06_M02855 TRANSFAC - 24770533 24770549 2.0E-06 GAAGACAAAACAAAACA 17
V_ERR1_Q2_M00511 TRANSFAC - 24772602 24772615 8.0E-06 TGAAAAAGGTCAAG 14
V_FPM315_01_M01587 TRANSFAC - 24771154 24771165 2.0E-06 CGGGGAGGAGGG 12
V_NRF2_Q4_M00821 TRANSFAC + 24768788 24768800 1.0E-06 CTGCAGAGTCATC 13
V_NRSF_01_M00256 TRANSFAC - 24770340 24770360 0.0E+00 GGCAGCACCAAGGACAGCGCC 21
V_NRSF_01_M00256 TRANSFAC + 24771508 24771528 6.0E-06 CTCAGCTCCGCCGAGAGCAGC 21
V_FOXO3_01_M00477 TRANSFAC + 24770529 24770542 6.0E-06 TTTTTGTTTTGTTT 14
V_REST_02_M02256 TRANSFAC - 24770340 24770360 0.0E+00 GGCAGCACCAAGGACAGCGCC 21
V_ZFP281_01_M01597 TRANSFAC + 24770598 24770608 5.0E-06 TGGGGGAAGGG 11
V_ZFP281_01_M01597 TRANSFAC + 24770633 24770643 1.0E-06 TGGGGGAGGGG 11
V_ZFP281_01_M01597 TRANSFAC + 24771056 24771066 1.0E-06 TGGGGGAGGGG 11
V_SOX21_04_M02907 TRANSFAC - 24768701 24768717 8.0E-06 GAGAAATTGTTCAGCTT 17
V_SOX8_03_M02808 TRANSFAC + 24770525 24770541 9.0E-06 TTTTTTTTTGTTTTGTT 17
V_ZFP281_04_M02831 TRANSFAC - 24770596 24770610 1.0E-06 TCCCCTTCCCCCACC 15
V_ZFP281_04_M02831 TRANSFAC - 24770631 24770645 0.0E+00 TTCCCCTCCCCCACC 15
V_NUR77_Q5_M01217 TRANSFAC + 24772603 24772612 2.0E-06 TTGACCTTTT 10
V_SRF_06_M02916 TRANSFAC - 24770521 24770537 6.0E-06 AAACAAAAAAAAAGACT 17
V_SRF_06_M02916 TRANSFAC - 24770522 24770538 5.0E-06 AAAACAAAAAAAAAGAC 17
V_HFH3_01_M00289 TRANSFAC - 24770451 24770463 1.0E-06 AGTTATTTGTATA 13
V_EWSR1FLI1_01_M02252 TRANSFAC + 24770603 24770620 2.0E-06 GAAGGGGAGGGAGGCAAG 18
V_EWSR1FLI1_01_M02252 TRANSFAC + 24770607 24770624 7.0E-06 GGGAGGGAGGCAAGAAAA 18
V_EWSR1FLI1_01_M02252 TRANSFAC + 24770608 24770625 2.0E-06 GGAGGGAGGCAAGAAAAG 18
V_EWSR1FLI1_01_M02252 TRANSFAC + 24770643 24770660 7.0E-06 GAAAAGAGGGAATGCAAG 18
V_EWSR1FLI1_01_M02252 TRANSFAC - 24771146 24771163 6.0E-06 GGGAGGAGGGGAGGGGGG 18
V_FOXJ2_01_M00422 TRANSFAC + 24770448 24770465 4.0E-06 TTTTATACAAATAACTAC 18
V_ZIC3_04_M02837 TRANSFAC - 24770302 24770316 4.0E-06 GCCACCCGGGGGGCT 15
V_ZIC3_04_M02837 TRANSFAC + 24770303 24770317 4.0E-06 GCCCCCCGGGTGGCT 15
V_VMAF_01_M00035 TRANSFAC - 24768786 24768804 7.0E-06 ACGAGATGACTCTGCAGAG 19
V_SMAD3_Q6_M00701 TRANSFAC - 24772094 24772102 3.0E-06 TGTCTGTCT 9
V_SOX2_Q6_M01272 TRANSFAC + 24770525 24770540 3.0E-06 TTTTTTTTTGTTTTGT 16
V_IRF1_01_M00062 TRANSFAC + 24768820 24768832 8.0E-06 GAAAATTAACAGC 13
V_MEF2_01_M00006 TRANSFAC + 24770450 24770465 7.0E-06 TTATACAAATAACTAC 16
V_NFE2L2_01_M02263 TRANSFAC - 24768789 24768799 3.0E-06 ATGACTCTGCA 11
V_UF1H3BETA_Q6_M01068 TRANSFAC + 24770596 24770609 2.0E-06 GGTGGGGGAAGGGG 14
V_UF1H3BETA_Q6_M01068 TRANSFAC + 24770631 24770644 0.0E+00 GGTGGGGGAGGGGA 14
V_SOX5_07_M02909 TRANSFAC - 24768702 24768718 8.0E-06 TGAGAAATTGTTCAGCT 17
V_ZFP128_04_M02932 TRANSFAC + 24770449 24770462 1.0E-06 TTTATACAAATAAC 14
V_SP1_Q4_01_M00932 TRANSFAC + 24771206 24771218 2.0E-06 ACGGGGCGGGGCC 13
V_ZIC2_04_M02836 TRANSFAC - 24770302 24770316 2.0E-06 GCCACCCGGGGGGCT 15
V_ZIC2_04_M02836 TRANSFAC + 24770303 24770317 2.0E-06 GCCCCCCGGGTGGCT 15
V_SMAD1_01_M01590 TRANSFAC - 24770528 24770539 1.0E-06 CAAAACAAAAAA 12
V_SMAD1_01_M01590 TRANSFAC - 24770533 24770544 6.0E-06 CAAAACAAAACA 12
V_NANOG_02_M01247 TRANSFAC - 24770524 24770543 0.0E+00 AAAACAAAACAAAAAAAAAG 20
V_NANOG_02_M01247 TRANSFAC - 24770529 24770548 0.0E+00 AAGACAAAACAAAACAAAAA 20
V_NANOG_02_M01247 TRANSFAC - 24770534 24770553 2.0E-06 TCTAGAAGACAAAACAAAAC 20
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL