Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NAGA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4668 N-acetylgalactosaminidase, alpha- chr22 - 42466346 - 42471846 42466846 Transcription Factor Binding Sites   Download all TFBS in the NAGA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 42470680 42470693 2.0E-06 GGGGTCATGGCCCC 14 RXRG_nuclearreceptor_full_dimeric_14_2 SELEX - 42470680 42470693 2.0E-06 GGGGCCATGACCCC 14 POU4F2_POU_full_monomeric_16_1 SELEX - 42467345 42467360 2.0E-06 ATAAATACTTGATGAA 16 Egr1_MA0162.1 JASPAR + 42467229 42467239 7.0E-06 TGCGTGGGAGG 11 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 42467203 42467211 2.0E-06 ATTAATCCC 9 RXRA_nuclearreceptor_full_dimeric_14_2 SELEX + 42470680 42470693 2.0E-06 GGGGTCATGGCCCC 14 RXRA_nuclearreceptor_full_dimeric_14_2 SELEX - 42470680 42470693 2.0E-06 GGGGCCATGACCCC 14 Rxra_nuclearreceptor_DBD_dimeric_12_1 SELEX - 42470681 42470692 7.0E-06 GGGCCATGACCC 12 SOX8_HMG_full_dimeric_15_1 SELEX + 42468825 42468839 5.0E-06 AGCAAATCCTGTGTT 15 CUX1_CUT_DBD_dimeric_17_1 SELEX - 42467344 42467360 6.0E-06 ATAAATACTTGATGAAT 17 EWSR1-FLI1_MA0149.1 JASPAR + 42466089 42466106 0.0E+00 GGAAGTGAGAAAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 42466145 42466162 2.0E-06 GGCAGGAAGGGAGGAGAT 18 ZNF238_C2H2_full_monomeric_13_1 SELEX - 42470764 42470776 6.0E-06 ATCACAGATGTTT 13 PITX1_homeodomain_full_monomeric_8_1 SELEX - 42467203 42467210 1.0E-05 TTAATCCC 8 POU4F3_POU_DBD_monomeric_16_1 SELEX - 42467345 42467360 2.0E-06 ATAAATACTTGATGAA 16 RUNX3_RUNX_full_monomeric_10_1 SELEX + 42466731 42466740 9.0E-06 AAACCGCAGA 10 ELF3_ETS_full_monomeric_13_1 SELEX - 42467326 42467338 1.0E-05 AAGAAGGAAGTAG 13 MEF2A_MA0052.1 JASPAR + 42468634 42468643 8.0E-06 ATATTTTTAG 10 RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX - 42470680 42470693 3.0E-06 GGGGCCATGACCCC 14 SP1_MA0079.2 JASPAR - 42470669 42470678 3.0E-06 CCCCTCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 42466833 42466849 7.0E-06 GAGGCCCCGCCCTCACT 17 MZF1_5-13_MA0057.1 JASPAR + 42466133 42466142 5.0E-06 GTATGGGGAA 10 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 42467203 42467210 1.0E-05 TTAATCCC 8 TBX2_TBX_full_dimeric_18_1 SELEX - 42466546 42466563 7.0E-06 GGTGTGAGGTCTGACATC 18 CREB3L1_bZIP_full_dimeric_12_1 SELEX + 42470264 42470275 4.0E-06 GGCCACGTTGCA 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX - 42470264 42470275 1.0E-05 TGCAACGTGGCC 12 REST_MA0138.2 JASPAR - 42468748 42468768 0.0E+00 TTGAGCACCTAGGAGAGTTGT 21 ELF5_MA0136.1 JASPAR + 42467327 42467335 4.0E-06 TACTTCCTT 9 POU4F1_POU_DBD_monomeric_14_1 SELEX - 42467347 42467360 5.0E-06 ATAAATACTTGATG 14 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX + 42470680 42470693 1.0E-06 GGGGTCATGGCCCC 14 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX - 42470680 42470693 1.0E-06 GGGGCCATGACCCC 14 V_KLF15_Q2_M01714 TRANSFAC - 42468802 42468815 4.0E-06 GATGTGGGGAGTGA 14 V_KLF15_Q2_M01714 TRANSFAC + 42470214 42470227 9.0E-06 GGGGAGGGGCGTTA 14 V_TGIF_01_M00418 TRANSFAC - 42468743 42468753 3.0E-06 AGTTGTCATTA 11 V_CDX2_Q5_01_M01659 TRANSFAC - 42467353 42467363 3.0E-06 TCAATAAATAC 11 V_NRSF_Q4_M01028 TRANSFAC + 42466778 42466796 3.0E-06 GACCTGCCGCCGCTTCTGA 19 V_ETS_B_M00340 TRANSFAC + 42466085 42466098 4.0E-06 GAGAGGAAGTGAGA 14 V_SP1_Q6_01_M00931 TRANSFAC + 42466666 42466675 4.0E-06 GGGGCGGGGC 10 V_RP58_01_M00532 TRANSFAC + 42470763 42470774 6.0E-06 CAAACATCTGTG 12 V_PLAG1_02_M01973 TRANSFAC + 42470782 42470797 1.0E-06 CCCCCTTCCTGGGCCC 16 V_RFX4_03_M02789 TRANSFAC + 42466884 42466898 1.0E-06 CCCCCTAGCAACGCT 15 V_IRF3_05_M02767 TRANSFAC + 42466523 42466536 9.0E-06 GAAATACGAAACAA 14 V_SP1_03_M02281 TRANSFAC - 42470669 42470678 3.0E-06 CCCCTCCCCC 10 V_EGR1_02_M01972 TRANSFAC + 42467229 42467239 4.0E-06 TGCGTGGGAGG 11 V_PITX2_Q6_M02114 TRANSFAC - 42467202 42467211 6.0E-06 ATTAATCCCA 10 V_COUPTF_Q6_M01036 TRANSFAC - 42470669 42470691 9.0E-06 GGCCATGACCCCTCCCCTCCCCC 23 V_PU1_Q4_M01172 TRANSFAC - 42466083 42466101 2.0E-06 CTTTCTCACTTCCTCTCCC 19 V_MEF2A_Q6_M02024 TRANSFAC + 42468635 42468644 8.0E-06 TATTTTTAGG 10 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 42466400 42466414 4.0E-06 TGGGGTCACGGCTGC 15 V_ETS_Q4_M00771 TRANSFAC - 42466087 42466098 1.0E-05 TCTCACTTCCTC 12 V_GC_01_M00255 TRANSFAC + 42466664 42466677 1.0E-06 GAGGGGCGGGGCTG 14 V_GC_01_M00255 TRANSFAC + 42466835 42466848 3.0E-06 TGAGGGCGGGGCCT 14 V_CRX_Q4_M00623 TRANSFAC - 42467201 42467213 1.0E-05 CGATTAATCCCAG 13 V_MECP2_01_M01298 TRANSFAC + 42466614 42466628 5.0E-06 CCGGGCTCAGAAAAA 15 V_SPI1_03_M02078 TRANSFAC + 42466086 42466095 1.0E-06 AGAGGAAGTG 10 V_NGFIC_01_M00244 TRANSFAC + 42467228 42467239 8.0E-06 GTGCGTGGGAGG 12 V_SOX7_04_M02911 TRANSFAC - 42468731 42468752 5.0E-06 GTTGTCATTATCTGAGATGTGG 22 V_E2F1_01_M01250 TRANSFAC - 42466380 42466387 1.0E-05 CGTTTCTT 8 V_SP1_Q6_M00196 TRANSFAC + 42466664 42466676 2.0E-06 GAGGGGCGGGGCT 13 V_SP1_Q6_M00196 TRANSFAC + 42466835 42466847 9.0E-06 TGAGGGCGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 42470669 42470682 0.0E+00 GGGGGAGGGGAGGG 14 V_RFXDC2_03_M02790 TRANSFAC + 42466884 42466898 3.0E-06 CCCCCTAGCAACGCT 15 V_ELF5_01_M01197 TRANSFAC - 42467327 42467337 7.0E-06 AGAAGGAAGTA 11 V_YY1_Q6_02_M01035 TRANSFAC - 42467190 42467200 7.0E-06 ACTTCCATTTT 11 V_REST_01_M01256 TRANSFAC + 42468744 42468765 1.0E-06 AATGACAACTCTCCTAGGTGCT 22 V_HBP1_03_M02762 TRANSFAC - 42467333 42467348 5.0E-06 TGAATGAATGAAGAAG 16 V_HBP1_03_M02762 TRANSFAC - 42467337 42467352 0.0E+00 TTGATGAATGAATGAA 16 V_KLF7_03_M02773 TRANSFAC + 42466898 42466913 1.0E-06 TGTGCCCCGCCCATAT 16 V_EGR2_01_M00246 TRANSFAC + 42467228 42467239 9.0E-06 GTGCGTGGGAGG 12 V_ELK1_01_M00007 TRANSFAC + 42466083 42466098 8.0E-06 GGGAGAGGAAGTGAGA 16 V_SP4_Q5_M01273 TRANSFAC - 42466665 42466675 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC - 42470213 42470223 7.0E-06 GCCCCTCCCCG 11 V_MTF1_06_M02882 TRANSFAC + 42466524 42466537 1.0E-06 AAATACGAAACAAC 14 V_T3R_01_M00239 TRANSFAC + 42466397 42466412 7.0E-06 CACTGGGGTCACGGCT 16 V_T3R_01_M00239 TRANSFAC + 42466640 42466655 8.0E-06 GCTTAAGGTCACCAAG 16 V_MAZR_01_M00491 TRANSFAC + 42470674 42470686 7.0E-06 AGGGGAGGGGTCA 13 V_GABPBETA_Q3_M01876 TRANSFAC + 42466086 42466096 2.0E-06 AGAGGAAGTGA 11 V_GABPBETA_Q3_M01876 TRANSFAC + 42467138 42467148 8.0E-06 AGAGGAAATGA 11 V_T3R_Q6_M00963 TRANSFAC + 42467034 42467042 7.0E-06 CCTGTCCTT 9 V_PLAG1_01_M01778 TRANSFAC - 42470707 42470722 4.0E-06 GGGGCACAGGGAGGGG 16 V_PLAG1_01_M01778 TRANSFAC - 42470783 42470798 2.0E-06 GGGGCCCAGGAAGGGG 16 V_E2F6_01_M01252 TRANSFAC - 42466380 42466387 1.0E-05 CGTTTCTT 8 V_ESRRA_04_M02852 TRANSFAC + 42470675 42470691 2.0E-06 GGGGAGGGGTCATGGCC 17 V_AIRE_01_M00999 TRANSFAC + 42467186 42467211 1.0E-06 TAGGAAAATGGAAGTCTGGGATTAAT 26 V_NKX22_01_M00485 TRANSFAC + 42467349 42467358 7.0E-06 TCAAGTATTT 10 V_DOBOX5_01_M01463 TRANSFAC + 42467199 42467215 1.0E-06 GTCTGGGATTAATCGTC 17 V_NRSF_01_M00256 TRANSFAC - 42468748 42468768 2.0E-06 TTGAGCACCTAGGAGAGTTGT 21 V_OTX2_01_M01387 TRANSFAC + 42467199 42467215 2.0E-06 GTCTGGGATTAATCGTC 17 V_TCF4_Q5_M00671 TRANSFAC + 42466110 42466117 1.0E-05 CCTTTGAA 8 V_SPIC_02_M02077 TRANSFAC + 42466086 42466095 3.0E-06 AGAGGAAGTG 10 V_PITX2_Q2_M00482 TRANSFAC - 42467201 42467211 1.0E-06 ATTAATCCCAG 11 V_REST_02_M02256 TRANSFAC - 42468748 42468768 0.0E+00 TTGAGCACCTAGGAGAGTTGT 21 V_ETS1_B_M00339 TRANSFAC + 42466086 42466100 6.0E-06 AGAGGAAGTGAGAAA 15 V_ETS1_B_M00339 TRANSFAC + 42467138 42467152 9.0E-06 AGAGGAAATGAGAGA 15 V_ZFP281_01_M01597 TRANSFAC + 42470668 42470678 7.0E-06 CGGGGGAGGGG 11 V_HSF_Q6_M00641 TRANSFAC + 42466497 42466509 1.0E-06 TTCCCGGAGCTTC 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 42466089 42466106 0.0E+00 GGAAGTGAGAAAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 42466145 42466162 2.0E-06 GGCAGGAAGGGAGGAGAT 18 V_FOXJ2_01_M00422 TRANSFAC - 42467349 42467366 0.0E+00 TTCTCAATAAATACTTGA 18 V_RFX3_05_M02892 TRANSFAC - 42466640 42466662 1.0E-06 GCTCTTTCTTGGTGACCTTAAGC 23 V_RFX3_04_M02788 TRANSFAC + 42466880 42466902 2.0E-06 AATCCCCCCTAGCAACGCTGTGC 23 V_PITX2_01_M01447 TRANSFAC + 42467199 42467215 3.0E-06 GTCTGGGATTAATCGTC 17 V_SP1_Q2_01_M00933 TRANSFAC - 42466665 42466674 7.0E-06 CCCCGCCCCT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 42470666 42470679 4.0E-06 CGCGGGGGAGGGGA 14 V_ELF5_04_M02241 TRANSFAC + 42467327 42467335 4.0E-06 TACTTCCTT 9 V_SP1_Q4_01_M00932 TRANSFAC + 42466664 42466676 3.0E-06 GAGGGGCGGGGCT 13 V_SP1_Q4_01_M00932 TRANSFAC + 42466835 42466847 8.0E-06 TGAGGGCGGGGCC 13 V_OBOX5_01_M01381 TRANSFAC + 42467199 42467215 8.0E-06 GTCTGGGATTAATCGTC 17 V_ARID5A_04_M02840 TRANSFAC + 42466520 42466536 1.0E-06 TCAGAAATACGAAACAA 17 V_OBOX6_06_M03067 TRANSFAC - 42467199 42467215 8.0E-06 GACGATTAATCCCAGAC 17 V_SPIB_03_M02076 TRANSFAC + 42466086 42466095 3.0E-06 AGAGGAAGTG 10 V_EGR3_01_M00245 TRANSFAC + 42467228 42467239 1.0E-05 GTGCGTGGGAGG 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.