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PRKRA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8575 protein kinase, interferon-inducible double stranded RNA dependent activator chr2 - 179314855 - 179320958 179315355 Transcription Factor Binding Sites   Download all TFBS in the PRKRA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 179315358 179315366 8.0E-06 GCACTTGAA 9 GCM1_GCM_DBD_monomeric_10_1 SELEX + 179315365 179315374 4.0E-06 AATGCGGGTA 10 GCM1_GCM_DBD_monomeric_10_1 SELEX + 179320872 179320881 4.0E-06 AATGCGGGTA 10 SOX21_HMG_DBD_dimeric_15_1 SELEX + 179313833 179313847 6.0E-06 AGCCATGGTAGTGTG 15 Sox1_HMG_DBD_dimeric_14_1 SELEX + 179320943 179320956 1.0E-06 TGAATTTCTAGTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 179320943 179320956 1.0E-06 TGACTAGAAATTCA 14 GCM2_GCM_DBD_monomeric_10_1 SELEX + 179315365 179315374 5.0E-06 AATGCGGGTA 10 GCM2_GCM_DBD_monomeric_10_1 SELEX + 179320872 179320881 5.0E-06 AATGCGGGTA 10 Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX - 179317715 179317725 7.0E-06 CGGATACAATC 11 SOX10_HMG_full_dimeric_14_1 SELEX + 179320943 179320956 2.0E-06 TGAATTTCTAGTCA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 179316720 179316736 6.0E-06 TTATTAAAAGTGATTTA 17 SOX2_HMG_full_dimeric_17_1 SELEX - 179313832 179313848 8.0E-06 TCACACTACCATGGCTT 17 SOX2_HMG_full_dimeric_17_1 SELEX - 179316693 179316709 5.0E-06 TACGAATAGCATTGTGC 17 RFX4_RFX_DBD_dimeric_16_1 SELEX - 179320916 179320931 4.0E-06 AATTCCCATGGCAACA 16 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 179315943 179315956 3.0E-06 GGCTACGCCCCCTC 14 YY1_C2H2_full_monomeric_11_1 SELEX - 179316565 179316575 5.0E-06 AACGCCATTAC 11 GLI2_C2H2_DBD_monomeric_14_1 SELEX - 179320793 179320806 1.0E-06 GACCACACACAATA 14 SOX8_HMG_DBD_dimeric_14_1 SELEX + 179320943 179320956 4.0E-06 TGAATTTCTAGTCA 14 IRF7_IRF_DBD_trimeric_17_1 SELEX - 179320939 179320955 8.0E-06 GACTAGAAATTCAATAC 17 RUNX3_RUNX_full_monomeric_10_1 SELEX + 179315145 179315154 1.0E-06 AAACCACAAA 10 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 179315945 179315960 7.0E-06 CTACGCCCCCTCGCTG 16 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 179315145 179315153 8.0E-06 AAACCACAA 9 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 179320916 179320931 4.0E-06 TGTTGCCATGGGAATT 16 NFATC1_NFAT_full_dimeric_14_1 SELEX + 179320917 179320930 8.0E-06 GTTGCCATGGGAAT 14 RUNX2_RUNX_DBD_dimeric_18_1 SELEX + 179315136 179315153 1.0E-06 AAACTGCAAAAACCACAA 18 XBP1_bZIP_DBD_dimeric_14_1 SELEX - 179316609 179316622 0.0E+00 AGCGACACGTCATC 14 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX - 179316608 179316620 5.0E-06 CGACACGTCATCT 13 znf143_MA0088.1 JASPAR + 179315597 179315616 3.0E-06 CTTTACCCAGAATGCCTCTG 20 SP4_C2H2_full_monomeric_17_1 SELEX - 179315912 179315928 9.0E-06 AAGGCTCCGCCCCCACC 17 SOX15_HMG_full_dimeric_15_1 SELEX - 179313833 179313847 2.0E-06 CACACTACCATGGCT 15 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 179315600 179315615 1.0E-06 TACCCAGAATGCCTCT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 179313992 179314007 1.0E-05 GGTTCCCATGGGGACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 179320916 179320931 3.0E-06 TGTTGCCATGGGAATT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 179320916 179320931 5.0E-06 AATTCCCATGGCAACA 16 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 179315357 179315366 7.0E-06 AGCACTTGAA 10 RFX5_RFX_DBD_dimeric_16_3 SELEX + 179320916 179320931 4.0E-06 TGTTGCCATGGGAATT 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 179320916 179320931 1.0E-06 AATTCCCATGGCAACA 16 GCM1_GCM_full_monomeric_11_1 SELEX + 179315365 179315375 6.0E-06 AATGCGGGTAG 11 FOXC1_MA0032.1 JASPAR + 179313966 179313973 7.0E-06 AGTAAGTA 8 RUNX1_MA0002.2 JASPAR - 179315145 179315155 1.0E-06 TTTTGTGGTTT 11 Zfx_MA0146.1 JASPAR - 179316780 179316793 8.0E-06 CCAGCCTCGGCCTC 14 RUNX3_RUNX_DBD_dimeric_18_1 SELEX + 179315136 179315153 0.0E+00 AAACTGCAAAAACCACAA 18 RXR_RAR_DR5_MA0159.1 JASPAR - 179315678 179315694 8.0E-06 AGGTCAGCGTGCGGGCA 17 V_GCM_Q2_M00634 TRANSFAC - 179315365 179315376 1.0E-06 CCTACCCGCATT 12 V_OSF2_Q6_M00731 TRANSFAC + 179315147 179315154 1.0E-05 ACCACAAA 8 V_ZFX_01_M01593 TRANSFAC - 179315721 179315736 8.0E-06 GCCGAGGCCCCGCCGC 16 V_ZFX_01_M01593 TRANSFAC + 179315723 179315738 1.0E-05 GGCGGGGCCTCGGCGC 16 V_HMGIY_Q3_M01010 TRANSFAC + 179320923 179320937 0.0E+00 ATGGGAATTTTTTTA 15 V_HMGIY_Q3_M01010 TRANSFAC + 179320940 179320954 8.0E-06 TATTGAATTTCTAGT 15 V_BCL6_01_M01183 TRANSFAC + 179316720 179316735 8.0E-06 TTATTAAAAGTGATTT 16 V_AML3_Q6_M01856 TRANSFAC + 179315146 179315153 1.0E-05 AACCACAA 8 V_HOXA3_01_M00395 TRANSFAC - 179316287 179316295 7.0E-06 CGTAATTTT 9 V_SPDEF_04_M02915 TRANSFAC - 179315050 179315065 9.0E-06 AAGAACATCCCAGTTT 16 V_CBF_02_M01080 TRANSFAC - 179320878 179320893 1.0E-05 ACAAGTGTGGTTTACC 16 V_SP1_Q6_01_M00931 TRANSFAC + 179315506 179315515 4.0E-06 GGGGCGGGGC 10 V_EGR_Q6_M00807 TRANSFAC + 179315913 179315923 7.0E-06 GTGGGGGCGGA 11 V_P50P50_Q3_M01223 TRANSFAC - 179317684 179317696 4.0E-06 AAGGGAATTCCTT 13 V_RFX4_03_M02789 TRANSFAC - 179320914 179320928 8.0E-06 TCCCATGGCAACACT 15 V_OCT_C_M00210 TRANSFAC + 179315160 179315172 9.0E-06 GTGCTTTGCATGC 13 V_PITX2_Q6_M02114 TRANSFAC + 179316761 179316770 1.0E-06 TGTAATCCCA 10 V_HTF_01_M00538 TRANSFAC - 179316603 179316626 1.0E-06 GAGAAGCGACACGTCATCTAATGG 24 V_ZFP691_03_M02833 TRANSFAC + 179320827 179320843 2.0E-06 ACGACAGTGCTCACTGT 17 V_TCFAP2E_04_M02926 TRANSFAC - 179320928 179320941 0.0E+00 TACTTAAAAAAATT 14 V_RPC155_01_M01798 TRANSFAC + 179316808 179316823 3.0E-06 TAAGCAGTTCGAGACC 16 V_PDEF_02_M02075 TRANSFAC + 179316345 179316354 2.0E-06 CCCGGATATA 10 V_ELF4_04_M02850 TRANSFAC - 179320927 179320943 7.0E-06 AATACTTAAAAAAATTC 17 V_GC_01_M00255 TRANSFAC + 179315545 179315558 3.0E-06 AGAGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC + 179315914 179315927 1.0E-06 TGGGGGCGGAGCCT 14 V_RUNX1_01_M02257 TRANSFAC - 179315145 179315155 1.0E-06 TTTTGTGGTTT 11 V_GFI1_01_M00250 TRANSFAC - 179316719 179316742 9.0E-06 CGCCCATAAATCACTTTTAATAAT 24 V_HNF4_01_B_M00411 TRANSFAC - 179320741 179320755 5.0E-06 GTGGTCAAAGTTAAT 15 V_STAF_01_M00262 TRANSFAC + 179315598 179315619 0.0E+00 TTTACCCAGAATGCCTCTGGAG 22 V_SOX8_04_M02912 TRANSFAC + 179315042 179315055 1.0E-06 ACATTCATAAACTG 14 V_SOX7_04_M02911 TRANSFAC + 179320833 179320854 5.0E-06 GTGCTCACTGTCTGTGCATGCT 22 V_E2F1_01_M01250 TRANSFAC + 179316161 179316168 1.0E-05 CGTTTCTT 8 V_SP4_03_M02810 TRANSFAC + 179315943 179315959 5.0E-06 GGCTACGCCCCCTCGCT 17 V_SP4_03_M02810 TRANSFAC + 179316010 179316026 2.0E-06 GGGTCCGCCCCCTTCCC 17 V_AML2_01_M01759 TRANSFAC + 179315146 179315153 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC + 179316013 179316026 8.0E-06 TCCGCCCCCTTCCC 14 V_SP1_Q6_M00196 TRANSFAC + 179315504 179315516 1.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 179315545 179315557 4.0E-06 AGAGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 179315914 179315926 6.0E-06 TGGGGGCGGAGCC 13 V_OCT1_05_M00161 TRANSFAC + 179315160 179315173 8.0E-06 GTGCTTTGCATGCC 14 V_TTF1_Q6_M00794 TRANSFAC - 179315357 179315368 5.0E-06 CATTCAAGTGCT 12 V_XBP1_02_M01770 TRANSFAC - 179316612 179316622 9.0E-06 AGCGACACGTC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 179316014 179316024 4.0E-06 CCGCCCCCTTC 11 V_SOX12_04_M02900 TRANSFAC - 179316454 179316469 3.0E-06 CAGAAGACAAAGGAGC 16 V_ZBRK1_01_M01105 TRANSFAC + 179316130 179316144 9.0E-06 AGGCCGCAGTTCTTT 15 V_PEBP_Q6_M00984 TRANSFAC + 179315143 179315157 7.0E-06 AAAAACCACAAAAAG 15 V_ERBETA_Q5_M01875 TRANSFAC - 179316261 179316275 4.0E-06 CTTAAAGTGACCCAG 15 V_KLF7_03_M02773 TRANSFAC - 179315503 179315518 8.0E-06 CGGGCCCCGCCCCTCT 16 V_KLF7_03_M02773 TRANSFAC - 179315544 179315559 7.0E-06 TCGGCCCCGCCCTCTC 16 V_GCM1_03_M02758 TRANSFAC - 179315362 179315377 1.0E-06 TCCTACCCGCATTCAA 16 V_NKX3A_01_M00451 TRANSFAC + 179320933 179320944 4.0E-06 TTTTAAGTATTG 12 V_HNF4A_Q6_01_M02016 TRANSFAC - 179320739 179320753 1.0E-06 GGTCAAAGTTAATTT 15 V_BRACH_01_M00150 TRANSFAC + 179315144 179315167 1.0E-05 AAAACCACAAAAAGGTGTGCTTTG 24 V_SOX11_03_M02795 TRANSFAC - 179316136 179316152 7.0E-06 CTAAGGACAAAGAACTG 17 V_SOX17_04_M02904 TRANSFAC + 179315038 179315054 0.0E+00 TTTCACATTCATAAACT 17 V_NKX32_02_M01482 TRANSFAC - 179320931 179320947 1.0E-05 ATTCAATACTTAAAAAA 17 V_KAISO_01_M01119 TRANSFAC - 179316149 179316158 4.0E-06 CTCCTGCTAA 10 V_SP4_Q5_M01273 TRANSFAC - 179315505 179315515 8.0E-06 GCCCCGCCCCT 11 V_OTX2_Q3_M01719 TRANSFAC + 179316177 179316189 1.0E-06 AGAGGGATTAGAG 13 V_GFI1_Q6_M01067 TRANSFAC - 179316725 179316737 4.0E-06 ATAAATCACTTTT 13 V_GATA1_05_M00346 TRANSFAC - 179315120 179315129 6.0E-06 GATGATAACA 10 V_MTF1_06_M02882 TRANSFAC + 179316269 179316282 7.0E-06 CTTTAAGAAAAAGA 14 V_TTF1_Q5_M02034 TRANSFAC + 179315356 179315369 1.0E-06 GAGCACTTGAATGC 14 V_PDEF_01_M02040 TRANSFAC + 179316345 179316354 3.0E-06 CCCGGATATA 10 V_E2F6_01_M01252 TRANSFAC + 179316161 179316168 1.0E-05 CGTTTCTT 8 V_GFI1B_01_M01058 TRANSFAC - 179316725 179316736 4.0E-06 TAAATCACTTTT 12 V_PITX1_01_M01484 TRANSFAC + 179316175 179316191 6.0E-06 AGAGAGGGATTAGAGGG 17 V_PARP_Q3_M01211 TRANSFAC + 179316272 179316281 3.0E-06 TAAGAAAAAG 10 V_XBP1_01_M00251 TRANSFAC + 179316607 179316623 1.0E-06 TAGATGACGTGTCGCTT 17 V_PITX2_Q2_M00482 TRANSFAC + 179316761 179316771 1.0E-06 TGTAATCCCAG 11 V_MEF3_B_M00319 TRANSFAC - 179315426 179315438 2.0E-06 TCGTCAGGTTTTC 13 V_RXR_RAR_01_M02272 TRANSFAC - 179315678 179315694 8.0E-06 AGGTCAGCGTGCGGGCA 17 V_VDR_Q3_M00444 TRANSFAC + 179315334 179315348 7.0E-06 GGGTGAGCGAGGTCT 15 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 179315145 179315152 1.0E-05 TGTGGTTT 8 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 179320881 179320888 1.0E-05 TGTGGTTT 8 V_SATB1_01_M01232 TRANSFAC - 179316717 179316728 8.0E-06 TTTTAATAATAT 12 V_SIX6_08_M02897 TRANSFAC - 179316344 179316360 8.0E-06 AGCGTATATATCCGGGG 17 V_SIX6_08_M02897 TRANSFAC + 179316345 179316361 4.0E-06 CCCGGATATATACGCTC 17 V_EKLF_Q5_M01874 TRANSFAC - 179315909 179315918 9.0E-06 CCCCACCCTG 10 V_SOX1_03_M02802 TRANSFAC - 179320937 179320952 0.0E+00 TAGAAATTCAATACTT 16 V_RFX3_04_M02788 TRANSFAC - 179320910 179320932 5.0E-06 AAATTCCCATGGCAACACTTTAG 23 V_ELF_02_M02053 TRANSFAC + 179316345 179316354 8.0E-06 CCCGGATATA 10 V_MEF2_01_M00006 TRANSFAC - 179316713 179316728 3.0E-06 TTTTAATAATATCCTT 16 V_SP1_Q2_01_M00933 TRANSFAC - 179315505 179315514 7.0E-06 CCCCGCCCCT 10 V_SP1_Q4_01_M00932 TRANSFAC + 179315504 179315516 2.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 179315545 179315557 1.0E-06 AGAGGGCGGGGCC 13 V_TCF3_05_M02920 TRANSFAC - 179320928 179320942 4.0E-06 ATACTTAAAAAAATT 15 V_BRCA_01_M01082 TRANSFAC - 179315386 179315393 1.0E-05 TTCTGTTG 8 V_GLIS2_04_M02863 TRANSFAC + 179316716 179316729 1.0E-06 GATATTATTAAAAG 14 V_PAX4_04_M00380 TRANSFAC + 179320737 179320766 0.0E+00 AAAAATTAACTTTGACCACAGCTTGATACG 30 V_SMAD1_01_M01590 TRANSFAC - 179316139 179316150 4.0E-06 AAGGACAAAGAA 12 V_SMAD1_01_M01590 TRANSFAC - 179316456 179316467 5.0E-06 GAAGACAAAGGA 12 V_T3RALPHA_Q6_M01724 TRANSFAC - 179315688 179315698 3.0E-06 CTTCAGGTCAG 11 V_OCT4_01_M01125 TRANSFAC - 179315163 179315177 1.0E-05 ATTTGGCATGCAAAG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.