Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TRRAP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8295 transformation/transcription domain-associated protein chr7 + 98471112 - 98476612 98476112 Transcription Factor Binding Sites   Download all TFBS in the TRRAP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 98477003 98477016 9.0E-06 GAGGCCGTGACCCC 14 ZBTB7A_C2H2_DBD_monomeric_12_1 SELEX + 98476709 98476720 9.0E-06 GGCGACCACAGC 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 98477625 98477636 2.0E-06 TAACAGGTGTCA 12 RXRA_nuclearreceptor_full_dimeric_14_2 SELEX + 98477003 98477016 6.0E-06 GAGGCCGTGACCCC 14 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 98477625 98477636 2.0E-06 TAACAGGTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 98477625 98477636 3.0E-06 TAACAGGTGTCA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 98477625 98477636 6.0E-06 TAACAGGTGTCA 12 FIGLA_bHLH_DBD_dimeric_10_1 SELEX + 98477544 98477553 1.0E-06 ACCACCTGTT 10 RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX + 98477003 98477016 8.0E-06 GAGGCCGTGACCCC 14 SP1_MA0079.2 JASPAR - 98477576 98477585 9.0E-06 CCCCTCCTCC 10 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 98477625 98477636 1.0E-06 TAACAGGTGTCA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 98477625 98477636 2.0E-06 TAACAGGTGTCA 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 98477624 98477637 0.0E+00 TTAACAGGTGTCAC 14 SNAI2_C2H2_DBD_monomeric_9_1 SELEX - 98477627 98477635 3.0E-06 AACAGGTGT 9 MSC_bHLH_full_dimeric_10_1 SELEX + 98477626 98477635 1.0E-05 GACACCTGTT 10 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 98477625 98477636 3.0E-06 TAACAGGTGTCA 12 Zfx_MA0146.1 JASPAR + 98476113 98476126 3.0E-06 CGCGCCGGGGCCTG 14 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX + 98477003 98477016 6.0E-06 GAGGCCGTGACCCC 14 RXRA_nuclearreceptor_DBD_dimeric_14_2 SELEX - 98477003 98477016 5.0E-06 GGGGTCACGGCCTC 14 V_FOXP1_01_M00987 TRANSFAC + 98479364 98479383 1.0E-06 GTGTGTGTGTTTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC + 98479370 98479389 0.0E+00 GTGTTTGTGTGTGTGTGTAT 20 V_MYOD_Q6_M00184 TRANSFAC + 98477544 98477553 7.0E-06 ACCACCTGTT 10 V_SOX40_04_M02908 TRANSFAC + 98478416 98478431 6.0E-06 AAAGATTAAAATATCT 16 V_ZFX_01_M01593 TRANSFAC - 98476114 98476129 1.0E-06 CACCAGGCCCCGGCGC 16 V_IRF_Q6_01_M00972 TRANSFAC + 98477636 98477646 9.0E-06 AAAATAGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 98477634 98477649 5.0E-06 TTAAAATAGAAACCAA 16 V_AP2_Q6_01_M00915 TRANSFAC + 98476305 98476317 4.0E-06 CGGCCCTCAGGCG 13 V_IRF3_05_M02767 TRANSFAC + 98477635 98477648 3.0E-06 TAAAATAGAAACCA 14 V_MAF_Q6_M00648 TRANSFAC + 98476959 98476974 0.0E+00 AAGGGGGAAGTTTGGA 16 V_SP1_03_M02281 TRANSFAC - 98477576 98477585 9.0E-06 CCCCTCCTCC 10 V_NERF_Q2_M00531 TRANSFAC + 98477434 98477451 7.0E-06 TGGCCGGAAGGAGCTCTC 18 V_MEF2A_Q6_M02024 TRANSFAC - 98477632 98477641 7.0E-06 TATTTTAACA 10 V_MEF2A_Q6_M02024 TRANSFAC - 98478419 98478428 6.0E-06 TATTTTAATC 10 V_CDP_04_M01344 TRANSFAC + 98479325 98479339 1.0E-05 AAGTGATGAGTAATA 15 V_E12_Q6_M00693 TRANSFAC - 98477625 98477635 4.0E-06 AACAGGTGTCA 11 V_P53_03_M01651 TRANSFAC + 98479390 98479409 5.0E-06 ATGCTTGTCAGTGCATGCAC 20 V_P53_03_M01651 TRANSFAC - 98479390 98479409 5.0E-06 GTGCATGCACTGACAAGCAT 20 V_E47_02_M00071 TRANSFAC - 98477541 98477556 7.0E-06 ACTAACAGGTGGTTTC 16 V_EGR1_Q6_M01873 TRANSFAC + 98476157 98476166 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 98477636 98477650 3.0E-06 CTTGGTTTCTATTTT 15 V_HMX1_01_M00433 TRANSFAC - 98476096 98476105 5.0E-06 CAAGTGGGTG 10 V_BCL6_Q3_M01171 TRANSFAC - 98475991 98476000 5.0E-06 GGTTCTAGGA 10 V_ISRE_01_M00258 TRANSFAC - 98477634 98477648 4.0E-06 TGGTTTCTATTTTAA 15 V_CUX1_04_M02959 TRANSFAC + 98479325 98479339 1.0E-05 AAGTGATGAGTAATA 15 V_JUNDM2_04_M02876 TRANSFAC + 98479326 98479341 9.0E-06 AGTGATGAGTAATACT 16 V_RREB1_01_M00257 TRANSFAC - 98479370 98479383 1.0E-05 ACACACACAAACAC 14 V_ISGF3G_03_M02771 TRANSFAC + 98477635 98477649 1.0E-06 TAAAATAGAAACCAA 15 V_SP4_Q5_M01273 TRANSFAC + 98476070 98476080 7.0E-06 GCCCCTCCCCG 11 V_TBP_01_M00471 TRANSFAC - 98477714 98477721 8.0E-06 TATAAATT 8 V_IRF5_03_M02769 TRANSFAC + 98477635 98477649 4.0E-06 TAAAATAGAAACCAA 15 V_MYF6_04_M02885 TRANSFAC - 98477511 98477525 5.0E-06 TTCAACAGACACACC 15 V_PDEF_01_M02040 TRANSFAC - 98477481 98477490 7.0E-06 ACCGGATACA 10 V_TFIIA_Q6_M00707 TRANSFAC + 98477569 98477580 6.0E-06 TATGCAAGGAGG 12 V_P53_05_M01655 TRANSFAC + 98479390 98479409 5.0E-06 ATGCTTGTCAGTGCATGCAC 20 V_P53_05_M01655 TRANSFAC - 98479390 98479409 5.0E-06 GTGCATGCACTGACAAGCAT 20 V_EGR1_06_M02744 TRANSFAC - 98476154 98476167 1.0E-06 CCCGCCCCCGCTTA 14 V_ARP1_01_M00155 TRANSFAC + 98477532 98477547 3.0E-06 CGAAGCCATGAAACCA 16 V_CP2_01_M00072 TRANSFAC - 98478371 98478381 9.0E-06 GCTATAACCAG 11 V_BHLHB2_04_M02845 TRANSFAC + 98479399 98479421 4.0E-06 AGTGCATGCACGTGTATGTCTGG 23 V_OTX3_01_M01403 TRANSFAC + 98477559 98477575 3.0E-06 AGAGCAGGATTATGCAA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.