Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPL11 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6135 ribosomal protein L11 chr1 + 24013268 - 24018768 24018268 Transcription Factor Binding Sites   Download all TFBS in the RPL11 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 24017973 24017988 9.0E-06 TTGCATGATTGATTTA 16 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 24017931 24017943 0.0E+00 GTAAACAAATATA 13 FOXF2_MA0030.1 JASPAR - 24017935 24017948 1.0E-06 ACAACGTAAACAAA 14 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 24018102 24018113 7.0E-06 TCCAAAAATAGT 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 24017931 24017942 9.0E-06 TAAACAAATATA 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 24017935 24017946 1.0E-06 AACGTAAACAAA 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 24017969 24017983 3.0E-06 CAATCATGCAAATTA 15 FOXL1_forkhead_full_dimeric_13_1 SELEX - 24017932 24017944 1.0E-06 CGTAAACAAATAT 13 ZNF435_C2H2_full_dimeric_18_1 SELEX + 24018746 24018763 1.0E-06 CCTGTTAACTGAGCAATT 18 MAX_bHLH_DBD_dimeric_10_1 SELEX - 24018735 24018744 1.0E-05 AACACGTGGT 10 FOXO1_forkhead_DBD_monomeric_8_1 SELEX - 24017936 24017943 7.0E-06 GTAAACAA 8 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 24018102 24018113 8.0E-06 TCCAAAAATAGT 12 SOX15_HMG_full_dimeric_15_3 SELEX + 24023061 24023075 6.0E-06 CTTCATAGCATTCAT 15 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 24018099 24018110 6.0E-06 AAAACTATTTTT 12 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 24022972 24022980 5.0E-06 GCCACTTAA 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 24017927 24017940 8.0E-06 AAATTATATTTGTT 14 POU4F3_POU_DBD_monomeric_16_1 SELEX + 24017973 24017988 8.0E-06 TTGCATGATTGATTTA 16 CLOCK_bHLH_DBD_dimeric_10_1 SELEX - 24018735 24018744 5.0E-06 AACACGTGGT 10 MEF2B_MADS_full_dimeric_12_1 SELEX - 24018102 24018113 7.0E-06 TCCAAAAATAGT 12 ETV2_ETS_DBD_monomeric_11_1 SELEX - 24018741 24018751 8.0E-06 AACAGGAAACA 11 Sox17_HMG_DBD_dimeric_15_2 SELEX - 24017925 24017939 8.0E-06 ACAAATATAATTTAT 15 NKX3-1_homeodomain_full_monomeric_9_1 SELEX + 24022972 24022980 8.0E-06 GCCACTTAA 9 ONECUT1_CUT_full_monomeric_14_1 SELEX - 24017977 24017990 8.0E-06 ATTAAATCAATCAT 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 24017933 24017943 0.0E+00 GTAAACAAATA 11 MEF2A_MA0052.1 JASPAR + 24018103 24018112 8.0E-06 CTATTTTTGG 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 24018741 24018754 8.0E-06 GTTAACAGGAAACA 14 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 24017977 24017990 6.0E-06 ATTAAATCAATCAT 14 FOXI1_MA0042.1 JASPAR + 24017930 24017941 0.0E+00 TTATATTTGTTT 12 znf143_MA0088.1 JASPAR + 24015056 24015075 6.0E-06 GGCCTCCCAGAGTGCCGAGA 20 RFX3_RFX_DBD_dimeric_15_1 SELEX + 24018647 24018661 6.0E-06 CGGTGCTAGGAAACC 15 YY2_C2H2_full_monomeric_11_1 SELEX - 24018311 24018321 9.0E-06 ACCGCCATGAT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 24017933 24017943 1.0E-06 GTAAACAAATA 11 PBX1_MA0070.1 JASPAR - 24017976 24017987 4.0E-06 AAATCAATCATG 12 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 24022972 24022981 7.0E-06 GCCACTTAAA 10 Foxd3_MA0041.1 JASPAR + 24017930 24017941 2.0E-06 TTATATTTGTTT 12 EN1_homeodomain_full_dimeric_14_1 SELEX + 24018751 24018764 1.0E-05 TAACTGAGCAATTA 14 EN1_homeodomain_full_dimeric_14_1 SELEX - 24018751 24018764 0.0E+00 TAATTGCTCAGTTA 14 Stat3_MA0144.1 JASPAR - 24023037 24023046 7.0E-06 TGCCAGGAAA 10 Nkx3-2_MA0122.1 JASPAR - 24022972 24022980 8.0E-06 TTAAGTGGC 9 FEV_MA0156.1 JASPAR - 24023036 24023043 1.0E-05 CAGGAAAT 8 MAX_MA0058.1 JASPAR - 24018736 24018745 7.0E-06 AAACACGTGG 10 DUXA_homeodomain_DBD_dimeric_13_1 SELEX - 24017977 24017989 3.0E-06 TTAAATCAATCAT 13 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 24018751 24018764 0.0E+00 TAACTGAGCAATTA 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 24018751 24018764 0.0E+00 TAATTGCTCAGTTA 14 RUNX1_MA0002.2 JASPAR + 24018227 24018237 3.0E-06 CTCTGTGGTTA 11 IRF3_IRF_full_trimeric_21_1 SELEX - 24018336 24018356 2.0E-06 GGATAAAGGAAAGCAAATCCA 21 FOXO3_forkhead_full_monomeric_8_1 SELEX - 24017936 24017943 7.0E-06 GTAAACAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 24017933 24017945 0.0E+00 ACGTAAACAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 24017931 24017943 1.0E-06 GTAAACAAATATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 24017937 24017949 5.0E-06 AACAACGTAAACA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 24018194 24018203 5.0E-06 TTTGCCAAAT 10 POU4F1_POU_DBD_monomeric_14_1 SELEX + 24017973 24017986 9.0E-06 TTGCATGATTGATT 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 24017977 24017990 4.0E-06 ATTAAATCAATCAT 14 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 24018757 24018767 4.0E-06 AGCAATTAAGT 11 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 24017930 24017943 5.0E-06 GTAAACAAATATAA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 24018741 24018754 4.0E-06 GTTAACAGGAAACA 14 V_ELF5_02_M01980 TRANSFAC - 24023035 24023044 3.0E-06 CCAGGAAATA 10 V_ELF5_03_M02057 TRANSFAC - 24023035 24023044 2.0E-06 CCAGGAAATA 10 V_FOXP1_01_M00987 TRANSFAC + 24017926 24017945 9.0E-06 TAAATTATATTTGTTTACGT 20 V_FOXP1_01_M00987 TRANSFAC + 24017930 24017949 3.0E-06 TTATATTTGTTTACGTTGTT 20 V_MSX3_01_M01341 TRANSFAC + 24018753 24018768 4.0E-06 ACTGAGCAATTAAGTT 16 V_DBX1_01_M01483 TRANSFAC - 24017926 24017942 6.0E-06 TAAACAAATATAATTTA 17 V_FREAC7_01_M00293 TRANSFAC - 24017933 24017948 8.0E-06 ACAACGTAAACAAATA 16 V_AML_Q6_M00769 TRANSFAC + 24018225 24018239 0.0E+00 ATCTCTGTGGTTAGC 15 V_SRY_07_M02813 TRANSFAC + 24017925 24017940 6.0E-06 ATAAATTATATTTGTT 16 V_SRY_07_M02813 TRANSFAC - 24017925 24017940 6.0E-06 AACAAATATAATTTAT 16 V_FOXA2_04_M02749 TRANSFAC - 24017932 24017948 1.0E-06 ACAACGTAAACAAATAT 17 V_NRSF_Q4_M01028 TRANSFAC - 24018540 24018558 7.0E-06 CTCCTGACCGTGCTTCTGA 19 V_FOXD3_01_M00130 TRANSFAC + 24017930 24017941 2.0E-06 TTATATTTGTTT 12 V_ETS_B_M00340 TRANSFAC - 24018738 24018751 2.0E-06 AACAGGAAACACGT 14 V_FOXO4_02_M00476 TRANSFAC + 24017933 24017946 0.0E+00 TATTTGTTTACGTT 14 V_ESE1_01_M01977 TRANSFAC - 24023035 24023044 3.0E-06 CCAGGAAATA 10 V_MEF2_02_M00231 TRANSFAC - 24018098 24018119 1.0E-06 GGGTTTTCCAAAAATAGTTTTT 22 V_OCT1_01_M00135 TRANSFAC - 24017966 24017984 3.0E-06 TCAATCATGCAAATTATGA 19 V_POU2F3_01_M01476 TRANSFAC - 24017967 24017982 2.0E-06 AATCATGCAAATTATG 16 V_FOXO3A_Q1_M01137 TRANSFAC - 24017933 24017944 3.0E-06 CGTAAACAAATA 12 V_HNF3_Q6_01_M01012 TRANSFAC + 24017928 24017945 2.0E-06 AATTATATTTGTTTACGT 18 V_HNF3_Q6_01_M01012 TRANSFAC + 24017932 24017949 1.0E-06 ATATTTGTTTACGTTGTT 18 V_FOXJ1_03_M02750 TRANSFAC - 24017931 24017946 0.0E+00 AACGTAAACAAATATA 16 V_HFH4_01_M00742 TRANSFAC + 24017930 24017942 0.0E+00 TTATATTTGTTTA 13 V_AREB6_04_M00415 TRANSFAC + 24018769 24018777 8.0E-06 CTGTTTCTT 9 V_NKX24_01_M01350 TRANSFAC + 24022969 24022984 4.0E-06 CAAGCCACTTAAAGCT 16 V_CMYC_02_M01154 TRANSFAC + 24018734 24018745 8.0E-06 AACCACGTGTTT 12 V_SOX21_03_M02803 TRANSFAC + 24017925 24017940 1.0E-06 ATAAATTATATTTGTT 16 V_SOX21_03_M02803 TRANSFAC - 24017925 24017940 1.0E-06 AACAAATATAATTTAT 16 V_HNF6_Q6_M00639 TRANSFAC - 24017978 24017989 1.0E-06 TTAAATCAATCA 12 V_HELIOSA_02_M01004 TRANSFAC + 24018107 24018117 5.0E-06 TTTTGGAAAAC 11 V_FREAC3_01_M00291 TRANSFAC - 24017933 24017948 1.0E-06 ACAACGTAAACAAATA 16 V_MYCMAX_01_M00118 TRANSFAC + 24018733 24018746 4.0E-06 TAACCACGTGTTTC 14 V_MYCMAX_01_M00118 TRANSFAC - 24018733 24018746 4.0E-06 GAAACACGTGGTTA 14 V_BEL1_B_M00312 TRANSFAC + 24018173 24018200 2.0E-06 GAGAAGCCGACGCTGCAGGGCTTTGCCA 28 V_HOXB13_01_M01467 TRANSFAC - 24017926 24017941 9.0E-06 AAACAAATATAATTTA 16 V_FOXO1_02_M00474 TRANSFAC + 24017933 24017946 0.0E+00 TATTTGTTTACGTT 14 V_RUNX1_01_M02257 TRANSFAC + 24018227 24018237 3.0E-06 CTCTGTGGTTA 11 V_MYCMAX_02_M00123 TRANSFAC + 24018734 24018745 2.0E-06 AACCACGTGTTT 12 V_GATA3_05_M02859 TRANSFAC + 24023239 24023260 4.0E-06 TACTAGAAATTTTATCAGCATT 22 V_CMYC_01_M01145 TRANSFAC + 24018734 24018745 8.0E-06 AACCACGTGTTT 12 V_NKX31_02_M02782 TRANSFAC + 24022968 24022984 3.0E-06 TCAAGCCACTTAAAGCT 17 V_NKX26_01_M01322 TRANSFAC + 24022969 24022984 0.0E+00 CAAGCCACTTAAAGCT 16 V_RSRFC4_Q2_M00407 TRANSFAC - 24018099 24018115 9.0E-06 TTTCCAAAAATAGTTTT 17 MYC_MAX_MA0059.1 JASPAR - 24018735 24018745 2.0E-06 AAACACGTGGT 11 V_AP2BETA_Q3_M01858 TRANSFAC - 24018272 24018287 9.0E-06 GCTTCCGGCCGAGGGC 16 V_HNF3_Q6_M00791 TRANSFAC - 24017931 24017943 2.0E-06 GTAAACAAATATA 13 V_NKX25_02_M00241 TRANSFAC - 24018759 24018766 7.0E-06 CTTAATTG 8 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 24017933 24017943 1.0E-05 TATTTGTTTAC 11 V_IRF_Q6_M00772 TRANSFAC + 24018288 24018302 3.0E-06 TCCGCTTTCTCTTCC 15 V_LEF1_03_M02878 TRANSFAC - 24017974 24017989 4.0E-06 TTAAATCAATCATGCA 16 V_NKX22_02_M01372 TRANSFAC + 24022969 24022985 8.0E-06 CAAGCCACTTAAAGCTT 17 V_EHF_02_M01974 TRANSFAC - 24023035 24023044 3.0E-06 CCAGGAAATA 10 V_USF_02_M00122 TRANSFAC + 24018733 24018746 8.0E-06 TAACCACGTGTTTC 14 V_USF_02_M00122 TRANSFAC - 24018733 24018746 8.0E-06 GAAACACGTGGTTA 14 V_JUNDM2_04_M02876 TRANSFAC + 24023258 24023273 9.0E-06 ATTGATGCGTCATGAA 11 V_PBX1_01_M00096 TRANSFAC - 24017977 24017985 4.0E-06 ATCAATCAT 9 V_OCT1_04_M00138 TRANSFAC - 24017964 24017986 1.0E-06 AATCAATCATGCAAATTATGACG 23 V_ZBRK1_01_M01105 TRANSFAC - 24018425 24018439 5.0E-06 GGCCAGCAGGCATTG 15 V_MEF2_04_M00233 TRANSFAC - 24018098 24018119 0.0E+00 GGGTTTTCCAAAAATAGTTTTT 22 V_PEBP_Q6_M00984 TRANSFAC - 24018225 24018239 0.0E+00 GCTAACCACAGAGAT 15 V_CDC5_01_M00478 TRANSFAC + 24017983 24017994 2.0E-06 GATTTAATGTAG 12 V_BLIMP1_Q6_M01066 TRANSFAC - 24018487 24018502 2.0E-06 ATGGCAGGGAAAGTGA 16 V_ICSBP_Q6_M00699 TRANSFAC - 24018290 24018301 7.0E-06 GAAGAGAAAGCG 12 V_FREAC2_01_M00290 TRANSFAC - 24017933 24017948 3.0E-06 ACAACGTAAACAAATA 16 V_EHF_03_M02052 TRANSFAC - 24023035 24023044 7.0E-06 CCAGGAAATA 10 V_GATA1_05_M00346 TRANSFAC - 24023248 24023257 6.0E-06 GCTGATAAAA 10 V_ALPHACP1_01_M00687 TRANSFAC - 24023020 24023030 3.0E-06 CATCCAATCAG 11 V_NFYC_Q5_M02107 TRANSFAC - 24023017 24023030 3.0E-06 CATCCAATCAGAGG 14 V_NKX25_03_M01414 TRANSFAC + 24022969 24022984 0.0E+00 CAAGCCACTTAAAGCT 16 V_OCT2_01_M01368 TRANSFAC - 24017967 24017982 3.0E-06 AATCATGCAAATTATG 16 V_BARHL1_01_M01332 TRANSFAC + 24018753 24018768 8.0E-06 ACTGAGCAATTAAGTT 16 V_MAX_01_M00119 TRANSFAC + 24018733 24018746 0.0E+00 TAACCACGTGTTTC 14 V_MAX_01_M00119 TRANSFAC - 24018733 24018746 0.0E+00 GAAACACGTGGTTA 14 V_OCT1_Q6_M00195 TRANSFAC - 24017968 24017982 1.0E-06 AATCATGCAAATTAT 15 V_FOXL1_04_M02753 TRANSFAC - 24017932 24017948 1.0E-06 ACAACGTAAACAAATAT 17 V_TCF7L2_04_M02922 TRANSFAC - 24017974 24017989 3.0E-06 TTAAATCAATCATGCA 16 V_NFY_01_M00287 TRANSFAC - 24023017 24023032 8.0E-06 GGCATCCAATCAGAGG 16 V_FOXO3_01_M00477 TRANSFAC + 24017933 24017946 0.0E+00 TATTTGTTTACGTT 14 V_FOX_Q2_M00809 TRANSFAC + 24017930 24017942 1.0E-06 TTATATTTGTTTA 13 V_PBX1_02_M00124 TRANSFAC - 24017974 24017988 4.0E-06 TAAATCAATCATGCA 15 V_PBX1_03_M01017 TRANSFAC - 24017976 24017987 1.0E-06 AAATCAATCATG 12 V_ESE1_02_M02055 TRANSFAC - 24023035 24023044 3.0E-06 CCAGGAAATA 10 V_HFH3_01_M00289 TRANSFAC + 24017930 24017942 0.0E+00 TTATATTTGTTTA 13 V_FOXJ2_01_M00422 TRANSFAC - 24017928 24017945 1.0E-06 ACGTAAACAAATATAATT 18 V_FOXJ2_01_M00422 TRANSFAC - 24017932 24017949 4.0E-06 AACAACGTAAACAAATAT 18 V_FOXO1_01_M00473 TRANSFAC - 24017935 24017944 5.0E-06 CGTAAACAAA 10 V_BARHL2_01_M01446 TRANSFAC + 24018753 24018768 3.0E-06 ACTGAGCAATTAAGTT 16 V_FOXO4_01_M00472 TRANSFAC - 24017933 24017943 5.0E-06 GTAAACAAATA 11 V_MYCMAX_03_M00615 TRANSFAC + 24018730 24018749 6.0E-06 GCATAACCACGTGTTTCCTG 20 V_MYCMAX_03_M00615 TRANSFAC - 24018730 24018749 6.0E-06 CAGGAAACACGTGGTTATGC 20 V_NFYA_Q5_M02106 TRANSFAC - 24023017 24023030 1.0E-06 CATCCAATCAGAGG 14 V_P300_01_M00033 TRANSFAC - 24018778 24018791 4.0E-06 AAGGGGAGTGAGCG 14 V_TCF11MAFG_01_M00284 TRANSFAC - 24023254 24023275 0.0E+00 CCTTCATGACGCATCAATGCTG 15 V_LTF_Q6_M01692 TRANSFAC + 24018522 24018530 6.0E-06 GGCACTTGC 9 V_PBX1_Q3_M02028 TRANSFAC - 24017977 24017985 9.0E-06 ATCAATCAT 9 V_FEV_01_M02269 TRANSFAC - 24023036 24023043 1.0E-05 CAGGAAAT 8 V_MIF1_01_M00279 TRANSFAC + 24018646 24018663 8.0E-06 TCGGTGCTAGGAAACCTT 18 V_FOXK1_03_M02752 TRANSFAC - 24017932 24017948 0.0E+00 ACAACGTAAACAAATAT 17 V_PAX6_01_M00097 TRANSFAC + 24017970 24017990 9.0E-06 AATTTGCATGATTGATTTAAT 21 V_SOX14_03_M02798 TRANSFAC + 24017925 24017940 3.0E-06 ATAAATTATATTTGTT 16 V_SOX14_03_M02798 TRANSFAC - 24017925 24017940 2.0E-06 AACAAATATAATTTAT 16 V_NKX21_01_M01312 TRANSFAC + 24022969 24022984 2.0E-06 CAAGCCACTTAAAGCT 16 V_ESE1_Q3_M01214 TRANSFAC - 24023035 24023044 3.0E-06 CCAGGAAATA 10 V_HSF1_Q6_01_M02017 TRANSFAC - 24023238 24023251 9.0E-06 AAAATTTCTAGTAC 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.