Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MPV17 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4358 MpV17 mitochondrial inner membrane protein chr2 - 27545469 - 27550969 27545969 Transcription Factor Binding Sites   Download all TFBS in the MPV17 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 27544126 27544136 6.0E-06 CATGAGTCACC 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 27544126 27544136 8.0E-06 GGTGACTCATG 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 27544150 27544160 9.0E-06 TATGACTCACC 11 CTCF_MA0139.1 JASPAR + 27544020 27544038 9.0E-06 TGACCACAAGGGGGAATCT 19 SOX4_HMG_DBD_dimeric_16_1 SELEX + 27546410 27546425 1.0E-06 CAACTATTTCAGTGCT 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 27546304 27546321 4.0E-06 GCACTTAACTATAACTTA 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 27546990 27547007 6.0E-06 TTAATCATAAAGGAATTG 18 SOX10_HMG_full_dimeric_15_3 SELEX - 27546551 27546565 7.0E-06 ATCAAGTCTAGTCAT 15 IRF7_IRF_DBD_dimeric_14_1 SELEX + 27545805 27545818 1.0E-06 TCCAAACCGAAAAT 14 SPIC_ETS_full_monomeric_14_1 SELEX + 27545222 27545235 3.0E-06 AGAAACAGGAAGTG 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 27546304 27546320 4.0E-06 CACTTAACTATAACTTA 17 ELF4_ETS_full_monomeric_12_1 SELEX + 27545224 27545235 5.0E-06 AAACAGGAAGTG 12 SOX9_HMG_full_dimeric_17_3 SELEX - 27546550 27546566 6.0E-06 CATCAAGTCTAGTCATG 17 SOX8_HMG_full_dimeric_15_1 SELEX + 27546411 27546425 1.0E-06 AACTATTTCAGTGCT 15 SOX8_HMG_full_dimeric_17_1 SELEX + 27546410 27546426 9.0E-06 CAACTATTTCAGTGCTT 17 SOX8_HMG_full_dimeric_17_1 SELEX - 27546550 27546566 8.0E-06 CATCAAGTCTAGTCATG 17 GLI2_C2H2_DBD_monomeric_14_1 SELEX + 27545847 27545860 1.0E-06 GACCACACACCTTG 14 ISL2_homeodomain_DBD_monomeric_8_1 SELEX - 27546314 27546321 1.0E-05 GCACTTAA 8 Sox17_HMG_DBD_dimeric_15_1 SELEX + 27546411 27546425 3.0E-06 AACTATTTCAGTGCT 15 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 27546438 27546446 5.0E-06 GCCACTTAA 9 SPIB_ETS_DBD_monomeric_14_1 SELEX + 27545222 27545235 1.0E-06 AGAAACAGGAAGTG 14 IRF1_MA0050.1 JASPAR + 27547810 27547821 7.0E-06 AAAAACAAAACT 12 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 27546399 27546414 8.0E-06 AGTTGCTATGAGGACG 16 NKX3-1_homeodomain_full_monomeric_9_1 SELEX + 27546438 27546446 8.0E-06 GCCACTTAA 9 ELF3_ETS_full_monomeric_13_1 SELEX + 27545224 27545236 6.0E-06 AAACAGGAAGTGA 13 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 27545311 27545324 8.0E-06 CTGACAGCTGGTGA 14 ELK1_ETS_full_dimeric_17_1 SELEX + 27545961 27545977 7.0E-06 AACTTCCGCCACAAGTC 17 TFCP2_CP2_full_dimeric_10_1 SELEX - 27545775 27545784 7.0E-06 AAACTGGTTC 10 SOX7_HMG_full_dimeric_17_1 SELEX + 27546410 27546426 4.0E-06 CAACTATTTCAGTGCTT 17 RFX2_RFX_DBD_dimeric_16_1 SELEX - 27546399 27546414 7.0E-06 AGTTGCTATGAGGACG 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 27546990 27547007 8.0E-06 TTAATCATAAAGGAATTG 18 ERF_ETS_DBD_monomeric_10_1 SELEX + 27545226 27545235 9.0E-06 ACAGGAAGTG 10 Nkx3-2_MA0122.1 JASPAR - 27546438 27546446 8.0E-06 TTAAGTGGC 9 JDP2_bZIP_full_dimeric_9_1 SELEX + 27544127 27544135 1.0E-05 ATGAGTCAC 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 27544151 27544159 7.0E-06 ATGACTCAC 9 ELF5_ETS_full_monomeric_11_1 SELEX + 27545225 27545235 6.0E-06 AACAGGAAGTG 11 IRF4_IRF_full_dimeric_15_1 SELEX + 27545805 27545819 2.0E-06 TCCAAACCGAAAATA 15 Sox11_HMG_DBD_dimeric_15_1 SELEX + 27546411 27546425 1.0E-06 AACTATTTCAGTGCT 15 SPI1_ETS_full_monomeric_14_1 SELEX + 27545222 27545235 1.0E-06 AGAAACAGGAAGTG 14 Sox3_HMG_DBD_dimeric_17_1 SELEX + 27546410 27546426 1.0E-05 CAACTATTTCAGTGCTT 17 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 27546990 27547007 8.0E-06 TTAATCATAAAGGAATTG 18 Sox1_HMG_DBD_dimeric_15_1 SELEX + 27546411 27546425 7.0E-06 AACTATTTCAGTGCT 15 SOX9_HMG_full_dimeric_17_1 SELEX + 27546410 27546426 2.0E-06 CAACTATTTCAGTGCTT 17 V_SPI1_01_M01203 TRANSFAC + 27545222 27545238 1.0E-06 AGAAACAGGAAGTGAGG 17 V_TGIF_01_M00418 TRANSFAC + 27545316 27545326 2.0E-06 AGCTGTCAGGA 11 V_STAT5A_Q6_M01890 TRANSFAC + 27544355 27544367 9.0E-06 CCTCTTCTCAGAA 13 V_FLI1_Q6_M01208 TRANSFAC + 27545227 27545237 2.0E-06 CAGGAAGTGAG 11 V_BACH2_01_M00490 TRANSFAC + 27544126 27544136 2.0E-06 CATGAGTCACC 11 V_BACH2_01_M00490 TRANSFAC + 27544150 27544160 5.0E-06 GGTGAGTCATA 11 V_SOX30_03_M02804 TRANSFAC - 27546223 27546238 3.0E-06 GCTGAACAATGAGACT 16 V_EOMES_03_M02747 TRANSFAC - 27546143 27546159 5.0E-06 ACTTAGGTGAGAAATAT 17 V_DR4_Q2_M00965 TRANSFAC + 27544928 27544944 3.0E-06 TGGACTCAAGTAACCCT 17 V_ZFP740_03_M02834 TRANSFAC + 27546971 27546986 4.0E-06 GCTCCACCCCCAATTT 16 V_RFX4_03_M02789 TRANSFAC + 27546402 27546416 7.0E-06 CCTCATAGCAACTAT 15 V_IRF3_05_M02767 TRANSFAC + 27547809 27547822 6.0E-06 AAAAAACAAAACTG 14 V_GATA_C_M00203 TRANSFAC - 27546907 27546917 1.0E-06 AGATAAGTAAA 11 V_AREB6_04_M00415 TRANSFAC - 27545221 27545229 8.0E-06 CTGTTTCTA 9 V_NKX24_01_M01350 TRANSFAC + 27546435 27546450 7.0E-06 ACAGCCACTTAAGAAA 16 V_COUPTF_Q6_M01036 TRANSFAC - 27545501 27545523 2.0E-06 TCATGTGGCCTCTGCCCCTTTAA 23 V_PU1_Q4_M01172 TRANSFAC - 27545223 27545241 0.0E+00 CACCCTCACTTCCTGTTTC 19 V_CETS1P54_02_M00074 TRANSFAC + 27545224 27545236 9.0E-06 AAACAGGAAGTGA 13 V_ETS_Q4_M00771 TRANSFAC - 27545227 27545238 7.0E-06 CCTCACTTCCTG 12 V_PDEF_02_M02075 TRANSFAC + 27545833 27545842 2.0E-06 CCCGGATATA 10 V_ELF4_04_M02850 TRANSFAC + 27547805 27547821 2.0E-06 GCTCAAAAAACAAAACT 17 V_BACH1_01_M00495 TRANSFAC + 27544124 27544138 4.0E-06 AGCATGAGTCACCAC 15 V_BACH1_01_M00495 TRANSFAC + 27544148 27544162 7.0E-06 CAGGTGAGTCATACA 15 V_COMP1_01_M00057 TRANSFAC - 27546392 27546415 7.0E-06 TAGTTGCTATGAGGACGACAAATA 24 V_GC_01_M00255 TRANSFAC - 27545973 27545986 3.0E-06 AAGGGGCGGGACTT 14 V_GC_01_M00255 TRANSFAC - 27546969 27546982 4.0E-06 TGGGGGTGGAGCTG 14 V_ZFP105_03_M02827 TRANSFAC + 27547806 27547820 5.0E-06 CTCAAAAAACAAAAC 15 V_NKX31_02_M02782 TRANSFAC - 27546310 27546326 4.0E-06 AACACGCACTTAACTAT 17 V_NKX31_02_M02782 TRANSFAC + 27546434 27546450 0.0E+00 AACAGCCACTTAAGAAA 17 V_NKX26_01_M01322 TRANSFAC - 27546310 27546325 8.0E-06 ACACGCACTTAACTAT 16 V_NKX26_01_M01322 TRANSFAC + 27546435 27546450 3.0E-06 ACAGCCACTTAAGAAA 16 V_SP1_Q6_M00196 TRANSFAC - 27545974 27545986 9.0E-06 AAGGGGCGGGACT 13 V_RXRA_04_M02895 TRANSFAC - 27545782 27545797 7.0E-06 TCAGGAAGGTTACAAA 16 V_LXR_DR4_Q3_M00766 TRANSFAC + 27544928 27544943 8.0E-06 TGGACTCAAGTAACCC 16 V_SOX_Q6_M01014 TRANSFAC + 27546226 27546238 9.0E-06 CTCATTGTTCAGC 13 V_NKX22_02_M01372 TRANSFAC + 27546435 27546451 2.0E-06 ACAGCCACTTAAGAAAT 17 V_MATH1_Q2_M01716 TRANSFAC - 27545312 27545321 6.0E-06 ACAGCTGGTG 10 V_NKX52_01_M01315 TRANSFAC + 27546435 27546451 4.0E-06 ACAGCCACTTAAGAAAT 17 V_GADP_01_M01258 TRANSFAC - 27545224 27545235 9.0E-06 CACTTCCTGTTT 12 V_JUNDM2_04_M02876 TRANSFAC + 27544123 27544138 4.0E-06 CAGCATGAGTCACCAC 16 V_JUNDM2_04_M02876 TRANSFAC - 27544148 27544163 4.0E-06 CTGTATGACTCACCTG 16 V_NFE4_Q5_M02105 TRANSFAC - 27544211 27544222 9.0E-06 GCCCCTCTCCAG 12 V_NFE4_Q5_M02105 TRANSFAC - 27545402 27545413 8.0E-06 CCCCCTCTCCTC 12 V_PEBP_Q6_M00984 TRANSFAC + 27544018 27544032 8.0E-06 GATGACCACAAGGGG 15 V_PEBP_Q6_M00984 TRANSFAC + 27545844 27545858 7.0E-06 GATGACCACACACCT 15 V_AHRARNT_02_M00237 TRANSFAC + 27546313 27546331 9.0E-06 GTTAAGTGCGTGTTTTGTC 19 V_SPIB_01_M01204 TRANSFAC + 27545222 27545238 2.0E-06 AGAAACAGGAAGTGAGG 17 V_TEL2_Q6_M00678 TRANSFAC - 27545227 27545236 4.0E-06 TCACTTCCTG 10 V_CETS1P54_01_M00032 TRANSFAC + 27545226 27545235 9.0E-06 ACAGGAAGTG 10 V_AP1_01_M00517 TRANSFAC + 27544125 27544137 3.0E-06 GCATGAGTCACCA 13 V_CTCF_02_M01259 TRANSFAC + 27544017 27544036 4.0E-06 TGATGACCACAAGGGGGAAT 20 V_AP1_Q2_01_M00924 TRANSFAC - 27544123 27544134 4.0E-06 TGACTCATGCTG 12 V_AP1_Q2_01_M00924 TRANSFAC + 27545497 27545508 9.0E-06 TGACTTAAAGGG 12 V_FOXO1_Q5_M01216 TRANSFAC + 27547810 27547818 1.0E-06 AAAAACAAA 9 V_NKX32_02_M01482 TRANSFAC - 27546310 27546326 2.0E-06 AACACGCACTTAACTAT 17 V_NKX32_02_M01482 TRANSFAC + 27546434 27546450 1.0E-06 AACAGCCACTTAAGAAA 17 V_ELF1_Q6_M00746 TRANSFAC + 27545223 27545234 2.0E-06 GAAACAGGAAGT 12 V_HBP1_04_M02866 TRANSFAC + 27546222 27546238 8.0E-06 TAGTCTCATTGTTCAGC 17 V_AP1_Q4_01_M00926 TRANSFAC + 27544152 27544159 1.0E-05 TGAGTCAT 8 V_MYOD_Q6_02_M02100 TRANSFAC + 27545315 27545323 4.0E-06 CAGCTGTCA 9 V_GABPBETA_Q3_M01876 TRANSFAC + 27545226 27545236 1.0E-06 ACAGGAAGTGA 11 V_EHF_06_M02745 TRANSFAC + 27545222 27545236 3.0E-06 AGAAACAGGAAGTGA 15 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 27546238 27546246 8.0E-06 GAGGGTGGG 9 V_PDEF_01_M02040 TRANSFAC + 27545833 27545842 3.0E-06 CCCGGATATA 10 V_LUN1_01_M00480 TRANSFAC + 27545989 27546005 2.0E-06 TCCCAGCGTCCTTCGGA 17 V_PLAG1_01_M01778 TRANSFAC + 27544218 27544233 8.0E-06 GGGGCCCAGGGAAGGG 16 V_DELTAEF1_01_M00073 TRANSFAC + 27545913 27545923 5.0E-06 ACTCACCTGAG 11 V_DELTAEF1_01_M00073 TRANSFAC + 27546148 27546158 8.0E-06 TCTCACCTAAG 11 V_PARP_Q3_M01211 TRANSFAC + 27546444 27546453 3.0E-06 TAAGAAATAC 10 V_FRA1_Q5_M01267 TRANSFAC + 27544152 27544159 1.0E-05 TGAGTCAT 8 V_PADS_C_M00211 TRANSFAC + 27547887 27547895 4.0E-06 TGTGGTCTC 9 V_NFAT2_02_M01749 TRANSFAC + 27546470 27546480 9.0E-06 TTCCACAGAAA 11 V_ETS1_B_M00339 TRANSFAC + 27545226 27545240 9.0E-06 ACAGGAAGTGAGGGT 15 V_SRF_06_M02916 TRANSFAC + 27547805 27547821 4.0E-06 GCTCAAAAAACAAAACT 17 V_NFE2_Q6_M02104 TRANSFAC + 27544126 27544141 1.0E-06 CATGAGTCACCACACA 16 V_NMYC_01_M00055 TRANSFAC + 27545937 27545948 5.0E-06 TCCCACGTGACA 12 V_HOXB3_01_M01330 TRANSFAC + 27546358 27546374 1.0E-06 TGAGCTCATGAGTGGGT 17 V_FOXO1_01_M00473 TRANSFAC + 27547809 27547818 2.0E-06 AAAAAACAAA 10 V_PPARG_02_M00515 TRANSFAC + 27547818 27547840 9.0E-06 AACTGGCTCAATGTGAGCTGGAT 23 V_PPARG_02_M00515 TRANSFAC - 27547818 27547840 1.0E-06 ATCCAGCTCACATTGAGCCAGTT 23 V_RFX3_04_M02788 TRANSFAC + 27546398 27546420 2.0E-06 TCGTCCTCATAGCAACTATTTCA 23 V_ELF_02_M02053 TRANSFAC + 27545833 27545842 8.0E-06 CCCGGATATA 10 V_FOXO4_01_M00472 TRANSFAC + 27547810 27547820 1.0E-05 AAAAACAAAAC 11 V_HMX3_02_M01413 TRANSFAC + 27546435 27546451 6.0E-06 ACAGCCACTTAAGAAAT 17 V_ELK1_03_M01163 TRANSFAC + 27545225 27545235 1.0E-05 AACAGGAAGTG 11 V_ZID_01_M00085 TRANSFAC + 27543883 27543895 3.0E-06 GGGCTCCAGCACC 13 V_LTF_Q6_M01692 TRANSFAC + 27547790 27547798 6.0E-06 GGCACTTGC 9 V_BHLHB2_04_M02845 TRANSFAC + 27546042 27546064 4.0E-06 CATGAATACCCGTGGAGAGCGGC 23 V_PAX4_04_M00380 TRANSFAC + 27543987 27544016 1.0E-06 AAATATAAGGACTCTTTCCCTCCCTATTCT 30 V_NKX21_01_M01312 TRANSFAC + 27546435 27546450 7.0E-06 ACAGCCACTTAAGAAA 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.