Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CELSR1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9620 cadherin, EGF LAG seven-pass G-type receptor 1 chr22 - 46932567 - 46938067 46933067 Transcription Factor Binding Sites   Download all TFBS in the CELSR1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 46935342 46935349 5.0E-06 ATAAACAA 8 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 46933566 46933576 1.0E-05 GCCCCGCCCCC 11 FOXF2_MA0030.1 JASPAR + 46935337 46935350 5.0E-06 TTTAAATAAACAAA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 46935339 46935350 0.0E+00 TAAATAAACAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 46935337 46935349 0.0E+00 TTTAAATAAACAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 46935339 46935349 2.0E-06 TAAATAAACAA 11 CEBPA_MA0102.2 JASPAR + 46935303 46935311 4.0E-06 TTTTGCAAT 9 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 46929308 46929319 0.0E+00 AAAATGCTGACG 12 ZIC4_C2H2_DBD_monomeric_15_1 SELEX - 46934417 46934431 6.0E-06 GGCCCCCCGTGGTTC 15 Foxq1_MA0040.1 JASPAR - 46935341 46935351 2.0E-06 TTTTGTTTATT 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 46935338 46935348 1.0E-06 TTAAATAAACA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 46935342 46935355 7.0E-06 ATAAACAAAACTCA 14 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 46937923 46937936 2.0E-06 TAGTCATAAAGTTA 14 SP1_MA0079.2 JASPAR + 46933545 46933554 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 46933567 46933576 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 46934353 46934362 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR - 46935340 46935351 0.0E+00 TTTTGTTTATTT 12 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 46934032 46934047 5.0E-06 GGCTTCAAAGTCCAGG 16 SP4_C2H2_full_monomeric_17_1 SELEX - 46934524 46934540 8.0E-06 AAAGCCCCGCCCATGCG 17 SOX18_HMG_full_dimeric_15_1 SELEX + 46934918 46934932 6.0E-06 AACAGTGTCTTTGTG 15 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX - 46929435 46929451 5.0E-06 CTCCGCCTGGCATGCCG 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 46935338 46935348 0.0E+00 TTAAATAAACA 11 SOX7_HMG_full_dimeric_17_1 SELEX + 46934917 46934933 8.0E-06 AAACAGTGTCTTTGTGC 17 NRL_bZIP_DBD_monomeric_11_1 SELEX + 46929308 46929318 1.0E-06 AAAATGCTGAC 11 Foxd3_MA0041.1 JASPAR - 46935340 46935351 1.0E-06 TTTTGTTTATTT 12 ELK1_MA0028.1 JASPAR + 46934834 46934843 5.0E-06 GAACCGGAAG 10 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX - 46933982 46933990 4.0E-06 TGCTGTAAA 9 MAFK_bZIP_full_monomeric_12_1 SELEX + 46929307 46929318 2.0E-06 GAAAATGCTGAC 12 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX - 46935045 46935058 7.0E-06 TTTCCCAACAGGAC 14 Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 46935342 46935349 5.0E-06 ATAAACAA 8 POU3F3_POU_DBD_dimeric_12_1 SELEX + 46935338 46935349 5.0E-06 TTAAATAAACAA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 46935336 46935348 1.0E-06 GTTTAAATAAACA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 46935340 46935352 2.0E-06 AAATAAACAAAAC 13 GLIS2_C2H2_DBD_monomeric_14_1 SELEX + 46934517 46934530 1.0E-06 GACCCCCCGCATGG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 46935342 46935355 5.0E-06 ATAAACAAAACTCA 14 V_CEBPG_Q6_M00622 TRANSFAC - 46934093 46934105 3.0E-06 TTCATTTAAAAGT 13 V_AP2ALPHA_Q6_M01857 TRANSFAC - 46934428 46934438 6.0E-06 TGCCCCCGGCC 11 V_FREAC7_01_M00293 TRANSFAC + 46935337 46935352 0.0E+00 TTTAAATAAACAAAAC 16 V_XFD1_01_M00267 TRANSFAC + 46935339 46935352 1.0E-06 TAAATAAACAAAAC 14 V_MAFK_03_M02776 TRANSFAC + 46929306 46929320 6.0E-06 GGAAAATGCTGACGG 15 V_FOXA2_04_M02749 TRANSFAC + 46935337 46935353 0.0E+00 TTTAAATAAACAAAACT 17 V_NRSF_Q4_M01028 TRANSFAC - 46933028 46933046 0.0E+00 GTGCTGCCCGTGCTGCTGC 19 V_AHRARNT_01_M00235 TRANSFAC + 46934442 46934457 0.0E+00 TTAGGTTTGCGTGACG 16 V_FOXD3_01_M00130 TRANSFAC - 46935340 46935351 1.0E-06 TTTTGTTTATTT 12 V_BCL6_01_M01183 TRANSFAC + 46935304 46935319 7.0E-06 TTTGCAATAAGGCTTT 16 V_DEAF1_01_M01001 TRANSFAC + 46938066 46938090 3.0E-06 GCGCCCTCAGGTGCTCCCTGAGATG 2 V_MAFB_05_M02775 TRANSFAC + 46929307 46929323 4.0E-06 GAAAATGCTGACGGAAG 17 V_FOXO4_02_M00476 TRANSFAC - 46935339 46935352 6.0E-06 GTTTTGTTTATTTA 14 V_MMEF2_Q6_M00405 TRANSFAC + 46935334 46935349 4.0E-06 GGGTTTAAATAAACAA 16 V_SP1_Q6_01_M00931 TRANSFAC - 46933561 46933570 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 46933566 46933575 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 46933719 46933728 4.0E-06 GGGGCGGGGC 10 V_SRY_02_M00160 TRANSFAC + 46935342 46935353 9.0E-06 ATAAACAAAACT 12 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 46934033 46934045 7.0E-06 CTGGACTTTGAAG 13 V_HNF4_Q6_M00967 TRANSFAC - 46934033 46934041 1.0E-05 AAAGTCCAG 9 V_FOXO3A_Q1_M01137 TRANSFAC + 46935341 46935352 8.0E-06 AATAAACAAAAC 12 V_YY1_Q6_M00793 TRANSFAC - 46933296 46933304 7.0E-06 GCCATCTTG 9 V_HNF3_Q6_01_M01012 TRANSFAC - 46935336 46935353 8.0E-06 AGTTTTGTTTATTTAAAC 18 V_MAF_Q6_M00648 TRANSFAC - 46934893 46934908 1.0E-06 TTGAGCGAAGTTGGCT 16 V_FOXJ1_03_M02750 TRANSFAC + 46935339 46935354 1.0E-06 TAAATAAACAAAACTC 16 V_SP1_03_M02281 TRANSFAC + 46933545 46933554 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 46933567 46933576 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 46934353 46934362 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 46935339 46935351 0.0E+00 TTTTGTTTATTTA 13 V_PITX2_Q6_M02114 TRANSFAC - 46935333 46935342 5.0E-06 TTTAAACCCA 10 V_SP1_02_M01303 TRANSFAC + 46933431 46933441 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC - 46933543 46933553 3.0E-06 GGGGCGGGGAG 11 V_SP1_02_M01303 TRANSFAC + 46934354 46934364 3.0E-06 GGGGCGGGGGG 11 V_AP4_Q6_02_M01860 TRANSFAC + 46935353 46935365 2.0E-06 TCAGCTGCAGCCA 13 V_FOXP3_01_M01599 TRANSFAC + 46935342 46935349 5.0E-06 ATAAACAA 8 V_ELF4_04_M02850 TRANSFAC + 46935336 46935352 7.0E-06 GTTTAAATAAACAAAAC 17 V_COMP1_01_M00057 TRANSFAC - 46932289 46932312 4.0E-06 GGCGTTGTTTGAGAACGAACCGGC 24 V_GC_01_M00255 TRANSFAC + 46934526 46934539 4.0E-06 CATGGGCGGGGCTT 14 V_MECP2_01_M01298 TRANSFAC + 46929383 46929397 0.0E+00 CCGGCGGCAACAAAT 15 V_FKLF_Q5_M01837 TRANSFAC - 46929363 46929372 5.0E-06 GGGGTGGGCG 10 V_FKLF_Q5_M01837 TRANSFAC - 46929501 46929510 2.0E-06 GGGGTGGGAG 10 V_BEL1_B_M00312 TRANSFAC + 46929308 46929335 2.0E-06 AAAATGCTGACGGAAGCGGCGCGGTGCC 28 V_HIC1_03_M01073 TRANSFAC + 46932278 46932295 3.0E-06 TGAGGGTGCCCGCCGGTT 18 V_KROX_Q6_M00982 TRANSFAC - 46933431 46933444 4.0E-06 TCAGCCCCCGCCCC 14 V_KROX_Q6_M00982 TRANSFAC + 46933546 46933559 5.0E-06 CCCGCCCCCGGCCC 14 V_KROX_Q6_M00982 TRANSFAC + 46933568 46933581 5.0E-06 CCCGCCCCCGGCCC 14 V_CEBPB_02_M00117 TRANSFAC - 46935300 46935313 2.0E-06 TTATTGCAAAACAG 14 V_SP1_Q6_M00196 TRANSFAC - 46933560 46933572 4.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 46933565 46933577 2.0E-06 CGGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 46934352 46934364 6.0E-06 GGGGGGCGGGGGG 13 V_HNF3_Q6_M00791 TRANSFAC + 46935338 46935350 0.0E+00 TTAAATAAACAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 46935338 46935348 2.0E-06 TGTTTATTTAA 11 V_HOXC11_01_M01329 TRANSFAC - 46937923 46937938 6.0E-06 TGTAGTCATAAAGTTA 16 V_PAX5_01_M00143 TRANSFAC - 46929330 46929357 1.0E-06 CCTAGGCCCAGCGAGGGGGAGAGGCACC 28 V_CDX1_01_M01373 TRANSFAC - 46937923 46937938 8.0E-06 TGTAGTCATAAAGTTA 16 V_TAXCREB_02_M00115 TRANSFAC + 46934390 46934404 1.0E-06 GTGACACACACCCCC 15 V_HFH1_01_M00129 TRANSFAC - 46935340 46935351 0.0E+00 TTTTGTTTATTT 12 V_ARID3A_04_M02735 TRANSFAC - 46935333 46935349 7.0E-06 TTGTTTATTTAAACCCA 17 V_ARID3A_04_M02735 TRANSFAC + 46935334 46935350 1.0E-06 GGGTTTAAATAAACAAA 17 V_ISGF3G_03_M02771 TRANSFAC + 46935341 46935355 4.0E-06 AATAAACAAAACTCA 15 V_HOXA11_01_M01378 TRANSFAC - 46937923 46937938 9.0E-06 TGTAGTCATAAAGTTA 16 V_FOXO1_Q5_M01216 TRANSFAC + 46935342 46935350 2.0E-06 ATAAACAAA 9 V_SP4_Q5_M01273 TRANSFAC - 46933430 46933440 7.0E-06 CCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 46933544 46933554 9.0E-06 TCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 46933561 46933571 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 46933566 46933576 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 46934353 46934363 5.0E-06 CCCCCGCCCCC 11 V_FREAC2_01_M00290 TRANSFAC + 46935337 46935352 3.0E-06 TTTAAATAAACAAAAC 16 V_HFH8_01_M00294 TRANSFAC - 46935339 46935351 0.0E+00 TTTTGTTTATTTA 13 V_AP4_01_M00005 TRANSFAC + 46935349 46935366 0.0E+00 AAACTCAGCTGCAGCCAG 18 V_CEBPA_01_M00116 TRANSFAC - 46935300 46935313 7.0E-06 TTATTGCAAAACAG 14 V_CNOT3_01_M01253 TRANSFAC - 46933655 46933664 8.0E-06 GGCCGCGCCC 10 V_FOXL1_04_M02753 TRANSFAC + 46935337 46935353 0.0E+00 TTTAAATAAACAAAACT 17 V_TCF7_04_M02921 TRANSFAC - 46935301 46935315 7.0E-06 CCTTATTGCAAAACA 15 V_FOXO3_01_M00477 TRANSFAC - 46935339 46935352 2.0E-06 GTTTTGTTTATTTA 14 V_FOX_Q2_M00809 TRANSFAC - 46935339 46935351 0.0E+00 TTTTGTTTATTTA 13 V_E47_01_M00002 TRANSFAC - 46934457 46934471 8.0E-06 GAGGCAGGTGTACCC 15 V_CEBPB_Q6_M01896 TRANSFAC + 46935303 46935312 4.0E-06 TTTTGCAATA 10 V_BBX_03_M02739 TRANSFAC - 46934094 46934108 1.0E-05 TCTTTCATTTAAAAG 15 V_SRF_06_M02916 TRANSFAC + 46935336 46935352 3.0E-06 GTTTAAATAAACAAAAC 17 V_SRF_06_M02916 TRANSFAC + 46937934 46937950 9.0E-06 CTACAAAGAAAACATGT 17 V_HFH3_01_M00289 TRANSFAC - 46935339 46935351 0.0E+00 TTTTGTTTATTTA 13 V_FOXJ2_01_M00422 TRANSFAC + 46935336 46935353 1.0E-06 GTTTAAATAAACAAAACT 18 V_FOXO1_01_M00473 TRANSFAC + 46935341 46935350 0.0E+00 AATAAACAAA 10 V_HNF3B_Q6_M02014 TRANSFAC - 46935341 46935349 6.0E-06 TTGTTTATT 9 V_IRF1_01_M00062 TRANSFAC + 46934385 46934397 2.0E-06 GAAAAGTGACACA 13 V_HOXC10_01_M01361 TRANSFAC - 46937923 46937938 4.0E-06 TGTAGTCATAAAGTTA 16 V_SOX15_04_M02903 TRANSFAC + 46934097 46934111 8.0E-06 TTAAATGAAAGAAGA 15 V_SP1_Q2_01_M00933 TRANSFAC + 46933567 46933576 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 46934353 46934362 4.0E-06 CCCCGCCCCC 10 V_FOXO4_01_M00472 TRANSFAC + 46935342 46935352 2.0E-06 ATAAACAAAAC 11 V_SP1_Q4_01_M00932 TRANSFAC - 46933560 46933572 6.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 46933565 46933577 3.0E-06 CGGGGGCGGGGCG 13 V_FOXK1_03_M02752 TRANSFAC + 46935337 46935353 1.0E-06 TTTAAATAAACAAAACT 17 V_DMRT5_01_M01150 TRANSFAC + 46934912 46934926 9.0E-06 TGCTGAAACAGTGTC 15 V_CEBPA_Q6_M01866 TRANSFAC + 46935300 46935312 4.0E-06 CTGTTTTGCAATA 13 V_NANOG_02_M01247 TRANSFAC + 46935338 46935357 7.0E-06 TTAAATAAACAAAACTCAGC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.