Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GCM2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 9247 glial cells missing homolog 2 (Drosophila) chr6 - 10881598 - 10887098 10882098 GCM2_GCM_DBD_monomeric_10_1 Transcription Factor Binding Sites   Download all TFBS in the GCM2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints BARHL2_homeodomain_full_dimeric_16_1 SELEX - 10887026 10887041 6.0E-06 TAAACGTTCCTTATTT 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 10887026 10887041 5.0E-06 TAAACGTTCCTTATTT 16 NFATC1_NFAT_full_dimeric_20_1 SELEX + 10886312 10886331 3.0E-06 TGTGGAAAACTCTAGTCCAA 20 REST_MA0138.2 JASPAR - 10882229 10882249 1.0E-06 TTCAGCACCGCGGCCAAGGAC 21 V_OSF2_Q6_M00731 TRANSFAC + 10886990 10886997 1.0E-05 ACCACAAA 8 V_BCL6B_03_M02740 TRANSFAC - 10878154 10878169 8.0E-06 GCTTTTGAAGAAAATG 16 V_DEAF1_01_M01001 TRANSFAC + 10883132 10883156 6.0E-06 ACGCTCCCGGGGACTTCGGAGGGAC 25 V_AML3_Q6_M01856 TRANSFAC - 10883368 10883375 1.0E-05 AACCACAA 8 V_AP2_Q6_01_M00915 TRANSFAC - 10883251 10883263 1.0E-05 CCTTCCCCAGGCT 13 V_SPZ1_01_M00446 TRANSFAC + 10883259 10883273 6.0E-06 GAAGGAGGGAAAGGG 15 V_LHX3A_01_M00510 TRANSFAC + 10886331 10886340 7.0E-06 ATTTAATTTT 10 V_HOXB13_01_M01467 TRANSFAC + 10886325 10886340 1.0E-05 AGTCCAATTTAATTTT 16 V_AML2_01_M01759 TRANSFAC - 10883368 10883375 1.0E-05 AACCACAA 8 V_NKX52_01_M01315 TRANSFAC - 10887057 10887073 1.0E-05 GCCAGCACTCAAAGGAT 17 V_TCF7_03_M02817 TRANSFAC + 10878156 10878172 1.0E-05 TTTTCTTCAAAAGCACT 17 V_PBX1_05_M01967 TRANSFAC - 10878189 10878202 4.0E-06 TGTGACTGACAGGT 14 V_STAT4_Q5_M02117 TRANSFAC - 10887074 10887083 8.0E-06 TTAAGAGAAA 10 V_LHX3b_01_M01971 TRANSFAC + 10886331 10886340 5.0E-06 ATTTAATTTT 10 V_MZF1_02_M00084 TRANSFAC + 10883272 10883284 6.0E-06 GGGAGAGGGGAAA 13 V_BLIMP1_Q6_M01066 TRANSFAC + 10883259 10883274 2.0E-06 GAAGGAGGGAAAGGGG 16 V_NANOG_01_M01123 TRANSFAC - 10883210 10883221 0.0E+00 GGGCTCATTTCC 12 V_NRSF_01_M00256 TRANSFAC - 10882229 10882249 3.0E-06 TTCAGCACCGCGGCCAAGGAC 21 V_REST_02_M02256 TRANSFAC - 10882229 10882249 1.0E-06 TTCAGCACCGCGGCCAAGGAC 21 V_PLZF_02_M01075 TRANSFAC + 10883345 10883373 2.0E-06 CTGTTTATCTGTTAAATAAGAGGTTGTGG 29 V_VDR_Q3_M00444 TRANSFAC + 10883263 10883277 5.0E-06 GAGGGAAAGGGGAGA 15 V_SOX15_04_M02903 TRANSFAC - 10886327 10886341 7.0E-06 CAAAATTAAATTGGA 15 V_TCF3_05_M02920 TRANSFAC - 10886330 10886344 3.0E-06 TGGCAAAATTAAATT 15 V_PAX4_04_M00380 TRANSFAC - 10883405 10883434 1.0E-05 AAAAAAAAAAAAAAAAAAAAAGATTTGTGT 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.