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NAF1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 92345 nuclear assembly factor 1 ribonucleoprotein chr4 - 164087573 - 164093073 164088073 Transcription Factor Binding Sites   Download all TFBS in the NAF1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 164083113 164083121 8.0E-06 ACACTTGAA 9 Sox1_HMG_DBD_dimeric_14_1 SELEX + 164083210 164083223 1.0E-06 TGAATACCCATTCC 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 164083210 164083223 2.0E-06 GGAATGGGTATTCA 14 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 164088218 164088233 1.0E-05 GCGGATCACAAGGTCA 16 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 164088226 164088241 2.0E-06 CAAGGTCAGGAGTTCA 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 164088038 164088048 2.0E-06 GACACGCCCCC 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 164088444 164088455 1.0E-05 AAAAAAAATAAT 12 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 164083274 164083282 2.0E-06 AAAAGTCAA 9 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX + 164086583 164086593 9.0E-06 GCTAGTAAAAT 11 Esrrb_MA0141.1 JASPAR + 164088222 164088233 9.0E-06 ATCACAAGGTCA 12 EGR1_C2H2_full_monomeric_14_1 SELEX + 164088040 164088053 9.0E-06 CACGCCCCCGCCAT 14 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 164088227 164088244 3.0E-06 AAGGTCAGGAGTTCACAG 18 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 164088039 164088054 3.0E-06 ACACGCCCCCGCCATT 16 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 164088444 164088457 5.0E-06 AAAAAAAATAATCA 14 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 164083182 164083195 3.0E-06 GAGTCACATAGTCA 14 SP4_C2H2_full_monomeric_17_1 SELEX + 164088035 164088051 6.0E-06 AAAGACACGCCCCCGCC 17 Egr3_C2H2_DBD_monomeric_15_1 SELEX + 164088040 164088054 4.0E-06 CACGCCCCCGCCATT 15 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX + 164088553 164088569 2.0E-06 TTCTGCTTGAAGCGCCA 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 164088447 164088457 7.0E-06 AAAAATAATCA 11 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 164088219 164088234 7.0E-06 CGGATCACAAGGTCAG 16 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 164088227 164088242 2.0E-06 AAGGTCAGGAGTTCAC 16 Foxd3_MA0041.1 JASPAR - 164088445 164088456 0.0E+00 GATTATTTTTTT 12 ID4_bHLH_DBD_dimeric_10_1 SELEX + 164085845 164085854 1.0E-06 TACACCTGTC 10 SOX18_HMG_full_dimeric_15_3 SELEX + 164083287 164083301 9.0E-06 AAGACTTTCATGCAA 15 TEAD1_TEA_full_dimeric_17_1 SELEX + 164085894 164085910 8.0E-06 GAATTCTGGGCATGGCA 17 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 164086499 164086518 4.0E-06 AATAGGCCAACTTAGTGTCA 20 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 164088219 164088233 4.0E-06 CGGATCACAAGGTCA 15 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 164088227 164088241 0.0E+00 AAGGTCAGGAGTTCA 15 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 164088227 164088242 2.0E-06 AAGGTCAGGAGTTCAC 16 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 164088445 164088457 1.0E-06 AAAAAAATAATCA 13 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 164088227 164088241 2.0E-06 AAGGTCAGGAGTTCA 15 E2F3_E2F_DBD_dimeric_18_3 SELEX + 164086515 164086532 9.0E-06 TATTATGACGCCATATCC 18 V_MEQ_01_M02049 TRANSFAC + 164092891 164092899 4.0E-06 AAAACACAT 9 V_FOXP1_01_M00987 TRANSFAC - 164083159 164083178 2.0E-06 CTGTTTGTGTAGGCGAGTGT 20 V_FOXP1_01_M00987 TRANSFAC + 164086571 164086590 3.0E-06 TTACTTTTCTTTGCTAGTAA 20 V_HNF3B_01_M00131 TRANSFAC - 164088444 164088458 2.0E-06 CTGATTATTTTTTTT 15 V_MYOD_Q6_M00184 TRANSFAC + 164085845 164085854 9.0E-06 TACACCTGTC 10 V_SRY_07_M02813 TRANSFAC + 164085819 164085834 3.0E-06 TCTTATTACAATACTC 16 V_SRY_07_M02813 TRANSFAC - 164085819 164085834 4.0E-06 GAGTATTGTAATAAGA 16 V_ALX4_01_M00619 TRANSFAC - 164085962 164085974 7.0E-06 CCTGAGAAGAAAC 13 V_FOXD3_01_M00130 TRANSFAC - 164088445 164088456 0.0E+00 GATTATTTTTTT 12 V_NFAT3_Q3_M01734 TRANSFAC + 164083122 164083131 3.0E-06 TCATTTTCCT 10 V_NKX25_Q6_M02108 TRANSFAC - 164083112 164083122 5.0E-06 AACACTTGAAA 11 V_AP4_Q6_M00176 TRANSFAC - 164087845 164087854 5.0E-06 CTCAGCTGGA 10 V_CEBP_Q2_M00190 TRANSFAC + 164085948 164085961 0.0E+00 AGATTGCTTAATGA 14 V_HNF3_Q6_01_M01012 TRANSFAC - 164088441 164088458 3.0E-06 CTGATTATTTTTTTTTGA 18 V_GABPA_04_M02858 TRANSFAC - 164088369 164088384 9.0E-06 CCAACTTCCGCCTGCT 16 V_PITX2_Q6_M02114 TRANSFAC + 164088186 164088195 7.0E-06 CGTAATCCCA 10 V_ATF4_Q2_M00514 TRANSFAC - 164088488 164088499 5.0E-06 CATGACGCAGTG 12 V_LYF1_01_M00141 TRANSFAC + 164088200 164088208 3.0E-06 TTTGGGAGA 9 V_TCFAP2E_04_M02926 TRANSFAC + 164088438 164088451 2.0E-06 GTCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 164088440 164088453 3.0E-06 CTCAAAAAAAAATA 14 V_HOXC13_01_M01317 TRANSFAC + 164086580 164086595 6.0E-06 TTTGCTAGTAAAATGA 16 V_BARBIE_01_M00238 TRANSFAC - 164086532 164086546 9.0E-06 TTTGAAAGCAGAAGG 15 V_WT1_Q6_01_M02036 TRANSFAC + 164088042 164088051 4.0E-06 CGCCCCCGCC 10 V_SRF_C_M00215 TRANSFAC + 164088503 164088517 9.0E-06 ACCATTCAAGGCCTG 15 V_ELF4_04_M02850 TRANSFAC + 164088438 164088454 0.0E+00 GTCTCAAAAAAAAATAA 17 V_ELF4_04_M02850 TRANSFAC + 164088439 164088455 0.0E+00 TCTCAAAAAAAAATAAT 17 V_ELF4_04_M02850 TRANSFAC + 164088440 164088456 4.0E-06 CTCAAAAAAAAATAATC 17 V_HMBOX1_01_M01456 TRANSFAC + 164091066 164091082 9.0E-06 GAAAGCTGGTTAAACAG 17 V_HELIOSA_02_M01004 TRANSFAC - 164088526 164088536 2.0E-06 AATAGGAAAAT 11 V_CEBPE_Q6_M01868 TRANSFAC + 164085946 164085959 7.0E-06 CCAGATTGCTTAAT 14 V_CEBPE_Q6_M01868 TRANSFAC - 164086000 164086013 7.0E-06 CATACTTTCGTAAC 14 V_ZFP105_03_M02827 TRANSFAC + 164088440 164088454 0.0E+00 CTCAAAAAAAAATAA 15 V_ZFP105_03_M02827 TRANSFAC + 164088443 164088457 3.0E-06 AAAAAAAAATAATCA 15 V_BEL1_B_M00312 TRANSFAC - 164087583 164087610 8.0E-06 GGCCTGCGGAGACTGCGTCACCTCCCCA 28 V_NFAT_Q6_M00302 TRANSFAC - 164088525 164088536 2.0E-06 AATAGGAAAATC 12 V_MRF2_01_M00454 TRANSFAC + 164083206 164083219 9.0E-06 AATCTGAATACCCA 14 V_NKX25_02_M00241 TRANSFAC + 164085938 164085945 7.0E-06 CTTAATTG 8 V_HNF3_Q6_M00791 TRANSFAC + 164088443 164088455 6.0E-06 AAAAAAAAATAAT 13 V_HNF1_Q6_01_M01011 TRANSFAC - 164085950 164085970 8.0E-06 AGAAGAAACTCATTAAGCAAT 21 V_NKX22_02_M01372 TRANSFAC - 164083109 164083125 2.0E-06 ATGAACACTTGAAAGAG 17 V_HMX1_02_M01481 TRANSFAC - 164085934 164085950 9.0E-06 TCTGGCAATTAAGCGAT 17 V_MEF2_04_M00233 TRANSFAC + 164088273 164088294 4.0E-06 ATCTCTACTAAAAATACAAAAA 22 V_PAX8_01_M00717 TRANSFAC - 164083292 164083306 9.0E-06 GACTCTTGCATGAAA 15 V_STAF_02_M00264 TRANSFAC - 164091059 164091079 7.0E-06 TTTAACCAGCTTTCCTAGAGG 21 V_PAX8_B_M00328 TRANSFAC - 164083290 164083307 6.0E-06 AGACTCTTGCATGAAAGT 18 V_FOXO1_Q5_M01216 TRANSFAC + 164087954 164087962 5.0E-06 AAAAACAAC 9 V_SOX17_04_M02904 TRANSFAC + 164092948 164092964 0.0E+00 CTTCACATACATACAAT 17 V_IRF7_01_M00453 TRANSFAC - 164083115 164083132 9.0E-06 TAGGAAAATGAACACTTG 18 V_USF_Q6_01_M00796 TRANSFAC + 164087375 164087386 9.0E-06 CAACACGTGAGC 12 V_GCNF_01_M00526 TRANSFAC - 164087823 164087840 2.0E-06 CTGAAATTCAATGGCACC 18 V_VJUN_01_M00036 TRANSFAC + 164086516 164086531 8.0E-06 ATTATGACGCCATATC 16 V_MTF1_06_M02882 TRANSFAC + 164087948 164087961 6.0E-06 AAATAGAAAAACAA 14 V_TTF1_Q5_M02034 TRANSFAC - 164083110 164083123 2.0E-06 GAACACTTGAAAGA 14 V_CEBPA_01_M00116 TRANSFAC + 164085948 164085961 3.0E-06 AGATTGCTTAATGA 14 V_HOXB8_01_M01451 TRANSFAC - 164085935 164085950 5.0E-06 TCTGGCAATTAAGCGA 16 V_AREB6_02_M00413 TRANSFAC + 164085844 164085855 7.0E-06 ATACACCTGTCT 12 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 164083083 164083091 8.0E-06 GAGGGTGGG 9 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 164087406 164087414 8.0E-06 GAGGGTGGG 9 V_TCF7_04_M02921 TRANSFAC + 164085819 164085833 9.0E-06 TCTTATTACAATACT 15 V_MYB_Q3_M00773 TRANSFAC - 164083064 164083074 9.0E-06 ACAGCCAGTTG 2 V_SMAD_Q6_01_M00974 TRANSFAC - 164085850 164085860 4.0E-06 TATTCAGACAG 11 V_CEBPB_Q6_M01896 TRANSFAC - 164085949 164085958 7.0E-06 TTAAGCAATC 10 V_SRF_06_M02916 TRANSFAC + 164087949 164087965 6.0E-06 AATAGAAAAACAACTTA 17 V_SRF_06_M02916 TRANSFAC + 164088438 164088454 1.0E-06 GTCTCAAAAAAAAATAA 17 V_SRF_06_M02916 TRANSFAC + 164088439 164088455 4.0E-06 TCTCAAAAAAAAATAAT 17 V_SRF_06_M02916 TRANSFAC + 164088440 164088456 2.0E-06 CTCAAAAAAAAATAATC 17 V_SRF_06_M02916 TRANSFAC + 164088441 164088457 4.0E-06 TCAAAAAAAAATAATCA 17 V_POU6F1_03_M01479 TRANSFAC + 164085951 164085967 6.0E-06 TTGCTTAATGAGTTTCT 17 V_EFC_Q6_M00626 TRANSFAC - 164088005 164088018 7.0E-06 AGTTACCTGAGAAA 14 V_E4F1_Q6_M00694 TRANSFAC - 164088082 164088091 6.0E-06 CATACGTCAC 10 V_PIT1_Q6_M00802 TRANSFAC - 164085855 164085872 4.0E-06 CATGCTTGCTTATATTCA 18 V_FOXO4_01_M00472 TRANSFAC + 164087954 164087964 6.0E-06 AAAAACAACTT 11 V_TFE_Q6_M01029 TRANSFAC + 164088495 164088502 1.0E-05 TCATGTGA 8 V_TCF3_05_M02920 TRANSFAC + 164088439 164088453 4.0E-06 TCTCAAAAAAAAATA 15 V_STAT1_05_M01260 TRANSFAC - 164086743 164086764 4.0E-06 GTTTTCAGGGAAGTCATCAGCG 22 V_SOX14_03_M02798 TRANSFAC + 164085819 164085834 4.0E-06 TCTTATTACAATACTC 16 V_SOX14_03_M02798 TRANSFAC - 164085819 164085834 2.0E-06 GAGTATTGTAATAAGA 16 V_OTX3_01_M01403 TRANSFAC + 164088148 164088164 5.0E-06 AAATCAGGATTAGGGGG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.