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RFT1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 91869 RFT1 homolog (S. cerevisiae) chr3 - 53163970 - 53169470 53164470 Transcription Factor Binding Sites   Download all TFBS in the RFT1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 53168894 53168912 1.0E-06 CAGCCACTAGGTGGCAGAT 19 ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 53166554 53166572 1.0E-06 GAATGAGGATTCAAGGTCA 19 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 53163666 53163677 2.0E-06 TGACAGATGACA 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 53163666 53163677 8.0E-06 TGTCATCTGTCA 12 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 53164526 53164536 1.0E-05 GCCCCGCCCCC 11 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX - 53164820 53164832 0.0E+00 CAAAGGTCAATGG 13 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 53164524 53164537 7.0E-06 TGCCCCGCCCCCCT 14 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 53164817 53164830 7.0E-06 AAGGTCAATGGTGA 14 Esrrb_MA0141.1 JASPAR - 53166554 53166565 2.0E-06 GATTCAAGGTCA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 53163666 53163677 2.0E-06 TGACAGATGACA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 53163666 53163677 6.0E-06 TGTCATCTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 53163666 53163677 2.0E-06 TGACAGATGACA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 53163666 53163677 5.0E-06 TGTCATCTGTCA 12 NR2F1_MA0017.1 JASPAR + 53165387 53165400 9.0E-06 TGGCCTTTGCTCCT 14 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 53164462 53164477 7.0E-06 TTATCGCGACTAAACG 16 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 53163666 53163677 4.0E-06 TGACAGATGACA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 53163666 53163677 3.0E-06 TGTCATCTGTCA 12 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX - 53166554 53166571 2.0E-06 AATGAGGATTCAAGGTCA 18 POU6F2_POU_DBD_dimeric_16_1 SELEX + 53163814 53163829 7.0E-06 CTTATGAGCTAAGTAC 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 53163814 53163829 3.0E-06 GTACTTAGCTCATAAG 16 NKX3-1_homeodomain_full_monomeric_9_1 SELEX - 53164555 53164563 5.0E-06 CCCACTTAA 9 SP1_MA0079.2 JASPAR - 53164526 53164535 7.0E-06 CCCCGCCCCC 10 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 53166553 53166562 1.0E-05 TCAAGGTCAG 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 53168895 53168911 4.0E-06 TCTGCCACCTAGTGGCT 17 PBX1_MA0070.1 JASPAR - 53164503 53164514 2.0E-06 CCATCAATCAGA 12 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 53164554 53164563 5.0E-06 CCCACTTAAA 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 53166553 53166563 3.0E-06 TTCAAGGTCAG 11 Nkx3-2_MA0122.1 JASPAR + 53165056 53165064 8.0E-06 CTAAGTGGA 9 FEV_MA0156.1 JASPAR + 53164441 53164448 1.0E-05 CAGGAAAT 8 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 53163666 53163677 4.0E-06 TGACAGATGACA 12 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 53163666 53163677 4.0E-06 TGTCATCTGTCA 12 HNF4A_MA0114.1 JASPAR - 53165387 53165399 2.0E-06 GGAGCAAAGGCCA 13 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 53166552 53166562 7.0E-06 TCAAGGTCAGT 11 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 53163666 53163677 2.0E-06 TGACAGATGACA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 53163666 53163677 5.0E-06 TGTCATCTGTCA 12 RORA_1_MA0071.1 JASPAR - 53166554 53166563 3.0E-06 TTCAAGGTCA 10 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 53163666 53163677 3.0E-06 TGACAGATGACA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 53163666 53163677 7.0E-06 TGTCATCTGTCA 12 V_MINI20_B_M00324 TRANSFAC + 53164730 53164750 9.0E-06 TTCAGCCACCAACCAAGAAGC 21 V_FOXP1_01_M00987 TRANSFAC + 53164934 53164953 2.0E-06 TTATGTGTATGGTTTTGTGA 20 V_CEBPG_Q6_M00622 TRANSFAC + 53164885 53164897 8.0E-06 CTCATTTAACAGA 13 V_HSF2_01_M00147 TRANSFAC + 53164808 53164817 8.0E-06 AGAAGATTCT 10 V_HSF2_01_M00147 TRANSFAC - 53164808 53164817 4.0E-06 AGAATCTTCT 10 V_FREAC7_01_M00293 TRANSFAC + 53163714 53163729 5.0E-06 ATCACATAAACAGAAG 16 V_GEN_INI_B_M00315 TRANSFAC + 53164884 53164891 1.0E-05 CCTCATTT 8 V_DUXL_01_M01390 TRANSFAC - 53163545 53163561 1.0E-06 TGAGCCAATCAACCCTA 17 V_SMAD3_Q6_01_M01888 TRANSFAC - 53164636 53164648 5.0E-06 GGACAGACAGCGC 13 V_RORA1_01_M00156 TRANSFAC - 53166553 53166565 9.0E-06 GATTCAAGGTCAG 13 V_MTF1_Q4_M00650 TRANSFAC + 53166508 53166521 9.0E-06 ACTGCACCCTGCCC 14 V_ERR3_Q2_01_M02094 TRANSFAC - 53166552 53166564 0.0E+00 ATTCAAGGTCAGT 13 V_LRH1_Q5_01_M02098 TRANSFAC - 53166554 53166564 1.0E-06 ATTCAAGGTCA 11 V_HOXA3_01_M00395 TRANSFAC - 53163678 53163686 7.0E-06 CCTAATTTT 9 V_SP1_Q6_01_M00931 TRANSFAC + 53164527 53164536 4.0E-06 GGGGCGGGGC 10 V_NR2F2_03_M02783 TRANSFAC - 53164820 53164835 3.0E-06 AAGCAAAGGTCAATGG 16 V_IRF_Q6_01_M00972 TRANSFAC - 53164597 53164607 1.0E-05 GAAATAGAAAG 11 V_GCNF_Q3_M02009 TRANSFAC - 53164822 53164831 3.0E-06 AAAGGTCAAT 10 V_SP1_03_M02281 TRANSFAC - 53164526 53164535 7.0E-06 CCCCGCCCCC 10 V_HNF4A_03_M02220 TRANSFAC - 53165387 53165399 2.0E-06 GGAGCAAAGGCCA 13 V_TR4_Q2_M01725 TRANSFAC + 53164822 53164832 7.0E-06 ATTGACCTTTG 11 V_NKX24_01_M01350 TRANSFAC + 53163582 53163597 0.0E+00 TGAGCCACTTGACTTA 16 V_COUPTF_Q6_M01036 TRANSFAC + 53165382 53165404 1.0E-05 CTCACTGGCCTTTGCTCCTCCAC 23 V_PU1_Q4_M01172 TRANSFAC - 53164776 53164794 9.0E-06 AGAAGTTTGTTCCCCTTTT 19 V_NFY_Q6_01_M00775 TRANSFAC - 53163551 53163563 4.0E-06 CTTGAGCCAATCA 13 V_AP1_Q6_M00174 TRANSFAC + 53165377 53165387 5.0E-06 GGTGACTCACT 11 V_RPC155_01_M01798 TRANSFAC - 53166430 53166445 3.0E-06 CCAGGAGTTGGAGACC 16 V_GEN_INI3_B_M00314 TRANSFAC + 53164884 53164891 1.0E-05 CCTCATTT 8 V_HNF4_01_B_M00411 TRANSFAC - 53165386 53165400 3.0E-06 AGGAGCAAAGGCCAG 15 V_COUP_01_M00158 TRANSFAC + 53165387 53165400 9.0E-06 TGGCCTTTGCTCCT 14 V_NKX26_01_M01322 TRANSFAC + 53163582 53163597 1.0E-06 TGAGCCACTTGACTTA 16 V_SP4_03_M02810 TRANSFAC - 53164521 53164537 1.0E-06 TGCCCCGCCCCCCTCTC 17 V_RSRFC4_Q2_M00407 TRANSFAC + 53164916 53164932 9.0E-06 AAGTTAGATATAGCACT 17 V_AP1_Q4_M00188 TRANSFAC + 53165377 53165387 4.0E-06 GGTGACTCACT 11 V_SP1_Q6_M00196 TRANSFAC + 53164525 53164537 6.0E-06 GGGGGGCGGGGCA 13 V_NKX22_02_M01372 TRANSFAC + 53163582 53163598 9.0E-06 TGAGCCACTTGACTTAA 17 V_DUXBL_01_M02968 TRANSFAC - 53163545 53163561 1.0E-06 TGAGCCAATCAACCCTA 17 V_PAX6_Q2_M00979 TRANSFAC + 53166553 53166566 9.0E-06 CTGACCTTGAATCC 14 V_OCT1_04_M00138 TRANSFAC - 53163781 53163803 7.0E-06 TTGGGATCATTCAAATAAACGTA 23 V_ERR1_Q3_M01841 TRANSFAC + 53166551 53166565 8.0E-06 AACTGACCTTGAATC 15 V_SPIB_01_M01204 TRANSFAC + 53164775 53164791 2.0E-06 CAAAAGGGGAACAAACT 17 V_DAX1_01_M01248 TRANSFAC - 53166548 53166567 2.0E-06 AGGATTCAAGGTCAGTTCTC 20 V_HFH1_01_M00129 TRANSFAC - 53163717 53163728 1.0E-05 TTCTGTTTATGT 12 V_HNF4A_Q6_01_M02016 TRANSFAC - 53164821 53164835 6.0E-06 AAGCAAAGGTCAATG 15 V_HNF4A_Q6_01_M02016 TRANSFAC - 53165384 53165398 2.0E-06 GAGCAAAGGCCAGTG 15 V_SP3_Q3_M00665 TRANSFAC - 53166514 53166527 1.0E-06 ATTCTTGGGCAGGG 14 V_CTCF_02_M01259 TRANSFAC + 53168891 53168910 0.0E+00 CACCAGCCACTAGGTGGCAG 20 V_NR1B1_Q6_M02110 TRANSFAC - 53164822 53164831 1.0E-06 AAAGGTCAAT 10 V_CTCF_01_M01200 TRANSFAC + 53168893 53168912 1.0E-06 CCAGCCACTAGGTGGCAGAT 20 V_AP1_Q2_01_M00924 TRANSFAC + 53165379 53165390 9.0E-06 TGACTCACTGGC 12 V_SF1_Q6_01_M01132 TRANSFAC + 53166554 53166562 3.0E-06 TGACCTTGA 9 V_GATA4_Q3_M00632 TRANSFAC + 53166485 53166496 6.0E-06 AGATTACAGGCA 12 V_SP4_Q5_M01273 TRANSFAC - 53164526 53164536 1.0E-06 GCCCCGCCCCC 11 V_LRH1_Q5_M01142 TRANSFAC + 53166553 53166564 1.0E-06 CTGACCTTGAAT 12 V_CAAT_01_M00254 TRANSFAC - 53163551 53163562 5.0E-06 TTGAGCCAATCA 12 V_MINI19_B_M00323 TRANSFAC + 53164730 53164750 8.0E-06 TTCAGCCACCAACCAAGAAGC 21 V_TTF1_Q5_M02034 TRANSFAC - 53164277 53164290 2.0E-06 GGGCCCTTGAGAGC 14 V_NKX25_03_M01414 TRANSFAC + 53163582 53163597 1.0E-06 TGAGCCACTTGACTTA 16 V_IPF1_05_M01255 TRANSFAC - 53163788 53163799 9.0E-06 GATCATTCAAAT 12 V_AP1FJ_Q2_M00172 TRANSFAC + 53165377 53165387 9.0E-06 GGTGACTCACT 11 V_HNF4_Q6_01_M01031 TRANSFAC - 53165386 53165399 3.0E-06 GGAGCAAAGGCCAG 14 V_CPHX_01_M01478 TRANSFAC - 53163549 53163562 4.0E-06 TTGAGCCAATCAAC 14 V_GEN_INI2_B_M00313 TRANSFAC + 53164884 53164891 1.0E-05 CCTCATTT 8 V_ERR2_01_M01589 TRANSFAC - 53166551 53166562 6.0E-06 TCAAGGTCAGTT 12 V_PBX1_02_M00124 TRANSFAC - 53164501 53164515 7.0E-06 GCCATCAATCAGACA 15 V_PBX1_03_M01017 TRANSFAC - 53164503 53164514 2.0E-06 CCATCAATCAGA 12 V_PLZF_02_M01075 TRANSFAC - 53164876 53164904 3.0E-06 TTCTTTCTCTGTTAAATGAGGACAATTCC 29 V_ESRRA_03_M02748 TRANSFAC - 53166549 53166565 6.0E-06 GATTCAAGGTCAGTTCT 17 V_CEBPB_Q6_M01896 TRANSFAC + 53164948 53164957 7.0E-06 TTGTGAAATC 10 V_RARA_03_M02787 TRANSFAC - 53164820 53164835 5.0E-06 AAGCAAAGGTCAATGG 16 V_NUR77_Q5_M01217 TRANSFAC + 53164823 53164832 1.0E-06 TTGACCTTTG 10 V_ERR1_Q2_01_M02093 TRANSFAC - 53164821 53164831 8.0E-06 AAAGGTCAATG 11 V_SP1_Q2_01_M00933 TRANSFAC - 53164526 53164535 4.0E-06 CCCCGCCCCC 10 V_TFE_Q6_M01029 TRANSFAC - 53165266 53165273 1.0E-05 TCATGTGA 8 V_GATA6_04_M02757 TRANSFAC - 53165081 53165097 1.0E-05 AAGAGTGATAAGTTTAG 17 V_SP1_Q4_01_M00932 TRANSFAC + 53164525 53164537 5.0E-06 GGGGGGCGGGGCA 13 V_LTF_Q6_M01692 TRANSFAC - 53163437 53163445 1.0E-05 GTCACTTGC 9 V_FEV_01_M02269 TRANSFAC + 53164441 53164448 1.0E-05 CAGGAAAT 8 V_SMAD1_01_M01590 TRANSFAC - 53163477 53163488 9.0E-06 CAGAAGAAAGAA 12 V_NKX21_01_M01312 TRANSFAC + 53163582 53163597 0.0E+00 TGAGCCACTTGACTTA 16 V_PPARG_01_M00512 TRANSFAC - 53164813 53164833 4.0E-06 GCAAAGGTCAATGGTGAGAAT 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.