Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF598 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 90850 zinc finger protein 598 chr16 - 2059322 - 2064822 2059822 Transcription Factor Binding Sites   Download all TFBS in the ZNF598 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GCM2_GCM_DBD_monomeric_10_1 SELEX - 2059573 2059582 9.0E-06 GATGCGGGTG 10 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 2058822 2058835 7.0E-06 GGGGTCAGAGGGTA 14 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 2060163 2060180 2.0E-06 CCACTTAAATGTCAATTT 18 Myc_MA0147.1 JASPAR + 2060323 2060332 7.0E-06 AGCACGTGGT 10 SPIC_ETS_full_monomeric_14_1 SELEX + 2058595 2058608 5.0E-06 AAAAAAAGAAAGAA 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 2058663 2058674 3.0E-06 TGGCAGATGTCA 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 2058663 2058674 5.0E-06 TGACATCTGCCA 12 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 2060163 2060179 1.0E-06 CACTTAAATGTCAATTT 17 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 2060167 2060177 4.0E-06 CTTAAATGTCA 11 SRF_MADS_DBD_dimeric_12_1 SELEX + 2060213 2060224 5.0E-06 ACCTTATTAGGA 12 MAX_bHLH_DBD_dimeric_10_1 SELEX - 2060323 2060332 1.0E-06 ACCACGTGCT 10 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX - 2055191 2055203 6.0E-06 TGCCGCGAGGGCA 13 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 2058663 2058674 5.0E-06 TGGCAGATGTCA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 2058663 2058674 5.0E-06 TGACATCTGCCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 2058663 2058674 4.0E-06 TGGCAGATGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 2058663 2058674 2.0E-06 TGACATCTGCCA 12 Pax4_MA0068.1 JASPAR + 2058594 2058623 2.0E-06 GAAAAAAAGAAAGAACCTACACCTCAATAC 30 ZNF238_C2H2_full_monomeric_13_1 SELEX + 2058187 2058199 9.0E-06 TACGCAGATGTTC 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX - 2055191 2055203 5.0E-06 TGCCGCGAGGGCA 13 Klf4_MA0039.2 JASPAR - 2059837 2059846 5.0E-06 TGGGTGGGGC 10 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 2058663 2058674 5.0E-06 TGACATCTGCCA 12 TCF4_bHLH_full_dimeric_10_1 SELEX - 2058284 2058293 3.0E-06 CACACCTGTA 10 E2F8_E2F_DBD_dimeric_12_1 SELEX + 2058949 2058960 8.0E-06 CTTCCCGCCAAG 12 MNT_bHLH_DBD_dimeric_10_1 SELEX - 2060323 2060332 2.0E-06 ACCACGTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 2055185 2055194 6.0E-06 AGCAGCTGCC 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 2058207 2058219 6.0E-06 GTCTGATGCAAGA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 2058207 2058220 8.0E-06 GGTCTGATGCAAGA 14 TFEB_bHLH_full_dimeric_10_1 SELEX + 2058458 2058467 8.0E-06 GTCACATGAC 10 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 2058822 2058835 7.0E-06 GGGGTCAGAGGGTA 14 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 2058280 2058294 5.0E-06 AAGCTACAGGTGTGC 15 Gata1_MA0035.2 JASPAR - 2060153 2060163 2.0E-06 TCAGATAAGGA 11 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 2060163 2060180 3.0E-06 CCACTTAAATGTCAATTT 18 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 2060172 2060181 5.0E-06 TCCACTTAAA 10 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 2060162 2060176 9.0E-06 GAAATTGACATTTAA 15 Foxd3_MA0041.1 JASPAR - 2058723 2058734 5.0E-06 ATTTGTTTGCTT 12 Nkx3-2_MA0122.1 JASPAR + 2060173 2060181 2.0E-06 TTAAGTGGA 9 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 2058663 2058674 8.0E-06 TGGCAGATGTCA 12 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 2058663 2058674 5.0E-06 TGACATCTGCCA 12 GCM1_GCM_full_monomeric_11_1 SELEX - 2059572 2059582 5.0E-06 GATGCGGGTGC 11 FOXI1_forkhead_full_dimeric_17_1 SELEX + 2058850 2058866 2.0E-06 GTCTGTACAGTCAAAAA 17 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 2058663 2058674 8.0E-06 TGGCAGATGTCA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 2058663 2058674 5.0E-06 TGACATCTGCCA 12 GRHL1_CP2_DBD_dimeric_10_1 SELEX + 2060224 2060233 6.0E-06 AAACCGGTCT 10 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 2055813 2055824 6.0E-06 TGCCCCCAGGCG 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 2060163 2060180 2.0E-06 CCACTTAAATGTCAATTT 18 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 2058161 2058178 7.0E-06 GTGGCAGCCTCTGCCCGC 18 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 2060189 2060201 7.0E-06 GCAAATACAAATA 13 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 2055813 2055824 7.0E-06 TGCCCCCAGGCG 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 2058663 2058674 5.0E-06 TGGCAGATGTCA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 2058663 2058674 4.0E-06 TGACATCTGCCA 12 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 2060298 2060309 7.0E-06 CTACATGAAAGA 12 V_MEQ_01_M02049 TRANSFAC + 2060245 2060253 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC - 2058582 2058601 7.0E-06 TTTTTTTCCTTTTCTTTCTT 20 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 2060167 2060180 6.0E-06 TGACATTTAAGTGG 14 V_AP2ALPHA_Q6_M01857 TRANSFAC + 2059335 2059345 3.0E-06 CGCCTCCGGCC 11 V_TCF3_01_M01594 TRANSFAC - 2058595 2058607 1.0E-06 TCTTTCTTTTTTT 13 V_E2F4_04_M02847 TRANSFAC - 2059777 2059793 5.0E-06 CGCTCGGCGCCACGACC 17 V_MEQCJUN_02_M02048 TRANSFAC + 2058316 2058326 5.0E-06 AGTGAGGTCAT 11 V_ATF_01_M00017 TRANSFAC - 2059824 2059837 4.0E-06 CGGTGACGTTTGCC 14 V_GATA1_Q6_M02004 TRANSFAC - 2060152 2060166 1.0E-06 ATTTCAGATAAGGAG 15 V_XPF1_Q6_M00684 TRANSFAC + 2060076 2060085 5.0E-06 TCAGATGAAC 10 V_SREBP2_Q6_M01177 TRANSFAC - 2055481 2055492 8.0E-06 TGGCCACCTCAC 12 V_CEBP_Q3_M00770 TRANSFAC - 2060197 2060208 8.0E-06 AGATTTAGCAAA 12 V_STAT3STAT3_Q3_M01220 TRANSFAC + 2058291 2058304 4.0E-06 GTGCTGGGAAACCT 14 V_EVI1_04_M00081 TRANSFAC + 2058583 2058597 9.0E-06 AGAAAGAAAAGGAAA 15 V_FOXD3_01_M00130 TRANSFAC - 2058723 2058734 5.0E-06 ATTTGTTTGCTT 12 V_BCL6_01_M01183 TRANSFAC - 2058590 2058605 8.0E-06 TTTCTTTTTTTCCTTT 16 V_ZFP740_04_M02938 TRANSFAC - 2058695 2058711 8.0E-06 AAATTCCCCCGGTTTGT 17 V_FOXJ2_02_M00423 TRANSFAC - 2060115 2060128 7.0E-06 CCATCAATATTTGG 14 V_MEF2_02_M00231 TRANSFAC - 2058570 2058591 9.0E-06 TTTCTTTCTTTAAGTAGACGTT 22 V_IRF_Q6_01_M00972 TRANSFAC + 2058596 2058606 5.0E-06 AAAAAAGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 2058586 2058601 5.0E-06 AAGAAAAGGAAAAAAA 16 V_IRF2_Q6_M01882 TRANSFAC + 2058594 2058609 4.0E-06 GAAAAAAAGAAAGAAC 16 V_CEBP_C_M00201 TRANSFAC - 2058203 2058220 1.0E-06 GGTCTGATGCAAGACATG 18 V_NFAT3_Q3_M01734 TRANSFAC - 2058592 2058601 6.0E-06 TTTTTTTCCT 10 V_CEBP_01_M00159 TRANSFAC + 2060195 2060207 1.0E-06 TATTTGCTAAATC 13 V_P50P50_Q3_M01223 TRANSFAC + 2058702 2058714 2.0E-06 GGGGGAATTTCAC 13 V_HNF3_Q6_01_M01012 TRANSFAC + 2060190 2060207 6.0E-06 ATTTGTATTTGCTAAATC 18 V_GKLF_02_M01588 TRANSFAC + 2059837 2059848 2.0E-06 GCCCCACCCAGC 12 V_PU1_Q4_M01172 TRANSFAC - 2058587 2058605 6.0E-06 TTTCTTTTTTTCCTTTTCT 19 V_TCFAP2E_04_M02926 TRANSFAC + 2058576 2058589 7.0E-06 TACTTAAAGAAAGA 14 V_TCFAP2E_04_M02926 TRANSFAC + 2058589 2058602 2.0E-06 AAAAGGAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC + 2058590 2058603 9.0E-06 AAAGGAAAAAAAGA 14 V_TAL1_GATA1_01_M02243 TRANSFAC - 2060155 2060172 2.0E-06 ATGTCAATTTCAGATAAG 18 V_SRF_C_M00215 TRANSFAC + 2060213 2060227 8.0E-06 ACCTTATTAGGAAAC 15 V_MYC_01_M02250 TRANSFAC + 2060323 2060332 7.0E-06 AGCACGTGGT 10 V_HELIOSA_02_M01004 TRANSFAC + 2058589 2058599 0.0E+00 AAAAGGAAAAA 11 V_RXRA_03_M02791 TRANSFAC - 2060083 2060099 0.0E+00 AGACATGACCCCTTGTT 17 V_GATA3_05_M02859 TRANSFAC - 2058467 2058488 1.0E-06 ATTTGGAGATTCTATCAGTCTG 22 V_NFAT_Q6_M00302 TRANSFAC + 2058589 2058600 3.0E-06 AAAAGGAAAAAA 12 V_NKX31_02_M02782 TRANSFAC - 2060169 2060185 2.0E-06 CAGGTCCACTTAAATGT 17 V_NKX26_01_M01322 TRANSFAC - 2060169 2060184 8.0E-06 AGGTCCACTTAAATGT 16 V_HIC1_03_M01073 TRANSFAC - 2055813 2055830 4.0E-06 CATGGGTGCCCCCAGGCG 18 V_IRF3_Q3_M01279 TRANSFAC - 2058590 2058602 3.0E-06 CTTTTTTTCCTTT 13 MYC_MAX_MA0059.1 JASPAR + 2060322 2060332 1.0E-05 CAGCACGTGGT 11 V_HNF3A_01_M01261 TRANSFAC + 2058723 2058732 7.0E-06 AAGCAAACAA 10 V_AP2BETA_Q3_M01858 TRANSFAC - 2058104 2058119 8.0E-06 GCTGGGGGCTGCGGAC 16 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 2060189 2060199 3.0E-06 TATTTGTATTT 11 V_IRF_Q6_M00772 TRANSFAC - 2058596 2058610 9.0E-06 GGTTCTTTCTTTTTT 15 V_ASCL2_03_M02737 TRANSFAC + 2055182 2055198 4.0E-06 CACAGCAGCTGCCCTCG 17 Tal1_Gata1_MA0140.1 JASPAR - 2060155 2060172 2.0E-06 ATGTCAATTTCAGATAAG 18 V_ERR1_Q3_M01841 TRANSFAC + 2060164 2060178 2.0E-06 AATTGACATTTAAGT 15 V_GATA1_09_M02254 TRANSFAC - 2060153 2060163 2.0E-06 TCAGATAAGGA 11 V_GCM1_03_M02758 TRANSFAC + 2059570 2059585 6.0E-06 GAGCACCCGCATCTTG 16 V_OCT4_02_M01124 TRANSFAC + 2060165 2060179 5.0E-06 ATTGACATTTAAGTG 15 V_CTCF_01_M01200 TRANSFAC + 2055808 2055827 8.0E-06 CTTGCCGCCTGGGGGCACCC 20 V_NKX32_02_M01482 TRANSFAC - 2060169 2060185 8.0E-06 CAGGTCCACTTAAATGT 17 V_TFIII_Q6_M00706 TRANSFAC - 2060509 2060517 6.0E-06 AGAGGGAGG 9 V_MTF1_06_M02882 TRANSFAC + 2058596 2058609 5.0E-06 AAAAAAGAAAGAAC 14 V_T3R_01_M00239 TRANSFAC + 2058315 2058330 0.0E+00 GAGTGAGGTCATGCTA 16 V_NKX25_03_M01414 TRANSFAC - 2060169 2060184 2.0E-06 AGGTCCACTTAAATGT 16 V_TAL1_01_M01591 TRANSFAC - 2058585 2058597 2.0E-06 TTTCCTTTTCTTT 13 V_STRA13_01_M00985 TRANSFAC - 2058237 2058250 1.0E-05 TTGGCACGTGAGGT 14 V_GATA1_04_M00128 TRANSFAC - 2060152 2060164 0.0E+00 TTCAGATAAGGAG 13 V_TFEB_01_M01768 TRANSFAC + 2058458 2058467 8.0E-06 GTCACATGAC 10 V_TFEB_01_M01768 TRANSFAC - 2058458 2058467 8.0E-06 GTCATGTGAC 10 V_MAX_04_M02881 TRANSFAC - 2058456 2058469 9.0E-06 CTGTCATGTGACAG 14 V_PITX1_01_M01484 TRANSFAC - 2060287 2060303 5.0E-06 ATGTAGGGATTTAAACA 17 V_ESRRA_04_M02852 TRANSFAC + 2060083 2060099 6.0E-06 AACAAGGGGTCATGTCT 17 V_FPM315_01_M01587 TRANSFAC + 2058915 2058926 7.0E-06 CGAGGAGGAGGA 12 V_SRF_01_M00152 TRANSFAC - 2060210 2060227 5.0E-06 GTTTCCTAATAAGGTGGC 18 V_STAT1STAT1_Q3_M01212 TRANSFAC - 2058290 2058302 8.0E-06 GTTTCCCAGCACA 13 V_LMO2COM_02_M00278 TRANSFAC - 2060154 2060162 3.0E-06 CAGATAAGG 9 V_OCT1_06_M00162 TRANSFAC + 2060162 2060175 7.0E-06 GAAATTGACATTTA 14 V_IRF1_Q6_01_M01881 TRANSFAC - 2058595 2058608 6.0E-06 TTCTTTCTTTTTTT 14 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 2058078 2058085 1.0E-05 TGTGGTTT 8 V_HNF3B_Q6_M02014 TRANSFAC - 2058724 2058732 6.0E-06 TTGTTTGCT 9 V_CREB_02_M00113 TRANSFAC + 2060328 2060339 2.0E-06 GTGGTGACGTCC 12 V_SOX15_04_M02903 TRANSFAC + 2060162 2060176 9.0E-06 GAAATTGACATTTAA 15 V_GMEB1_04_M02865 TRANSFAC - 2058860 2058875 2.0E-06 TGGGAGACGTTTTTGA 16 V_GATA5_03_M02756 TRANSFAC - 2060150 2060166 5.0E-06 ATTTCAGATAAGGAGCA 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 2055601 2055614 7.0E-06 GGTGGGGCTGGGGA 14 V_TFE_Q6_M01029 TRANSFAC - 2058459 2058466 1.0E-05 TCATGTGA 8 V_CP2_01_M00072 TRANSFAC - 2059582 2059592 6.0E-06 GCTCTACCAAG 11 V_PAX4_04_M00380 TRANSFAC + 2058597 2058626 3.0E-06 AAAAAGAAAGAACCTACACCTCAATACTGC 30 V_SMAD1_01_M01590 TRANSFAC + 2058597 2058608 2.0E-06 AAAAAGAAAGAA 12 V_CEBPA_Q6_M01866 TRANSFAC - 2060196 2060208 3.0E-06 AGATTTAGCAAAT 13 V_TR4_03_M01782 TRANSFAC - 2058822 2058834 7.0E-06 GGGTCAGAGGGTA 13 V_AP2_Q3_M00800 TRANSFAC - 2055808 2055823 2.0E-06 GCCCCCAGGCGGCAAG 16 V_NANOG_02_M01247 TRANSFAC + 2058579 2058598 0.0E+00 TTAAAGAAAGAAAAGGAAAA 20 V_NANOG_02_M01247 TRANSFAC + 2058593 2058612 2.0E-06 GGAAAAAAAGAAAGAACCTA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.