Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PPP1R3F Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 89801 protein phosphatase 1, regulatory subunit 3F chrX + 49121305 - 49126805 49126305 Transcription Factor Binding Sites   Download all TFBS in the PPP1R3F promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR - 49125880 49125890 6.0E-06 TGCGTAGGCGG 11 ZBTB7A_C2H2_DBD_monomeric_12_1 SELEX + 49126906 49126917 2.0E-06 TGCGACCACCCA 12 NFIA_NFI_full_dimeric_15_1 SELEX + 49125637 49125651 2.0E-06 TTGGCTATCCGCCAG 15 SPIC_ETS_full_monomeric_14_1 SELEX - 49125996 49126009 4.0E-06 CTAATGCGGAAGTC 14 YY1_C2H2_full_monomeric_11_1 SELEX - 49130153 49130163 1.0E-05 TCCGCCATTTC 11 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 49125962 49125973 4.0E-06 ACTTTTCCCACC 12 ZNF232_C2H2_full_monomeric_19_1 SELEX - 49125716 49125734 1.0E-05 AGGCTAAAAGGAGACCAAG 19 NFIX_NFI_full_dimeric_15_2 SELEX - 49125637 49125651 4.0E-06 CTGGCGGATAGCCAA 15 GLI2_C2H2_DBD_monomeric_14_1 SELEX + 49126909 49126922 7.0E-06 GACCACCCAGCGCG 14 NFYA_MA0060.1 JASPAR - 49125454 49125469 8.0E-06 AGTAGCCAATAAGGAG 16 NFYA_MA0060.1 JASPAR - 49125630 49125645 8.0E-06 GATAGCCAATGAGGGA 16 NFYA_MA0060.1 JASPAR - 49126114 49126129 9.0E-06 CGCAGCCAATGGGGAT 16 NFYA_MA0060.1 JASPAR - 49126250 49126265 7.0E-06 GGCAGCCAATGGGAAG 16 EGR1_C2H2_full_monomeric_14_1 SELEX + 49125879 49125892 9.0E-06 ACCGCCTACGCAAC 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 49125996 49126009 4.0E-06 CTAATGCGGAAGTC 14 TCF7L1_HMG_full_monomeric_12_1 SELEX - 49125600 49125611 9.0E-06 AGACCTCAAAGG 12 NKX3-1_homeodomain_full_monomeric_9_1 SELEX - 49129928 49129936 5.0E-06 CCCACTTAA 9 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 49129941 49129954 8.0E-06 CTATCAAAAAGCCA 14 EGR2_C2H2_full_monomeric_15_1 SELEX + 49125878 49125892 3.0E-06 CACCGCCTACGCAAC 15 SRY_MA0084.1 JASPAR - 49130073 49130081 7.0E-06 TAAAACAAT 9 Egr3_C2H2_DBD_monomeric_15_1 SELEX + 49125879 49125893 6.0E-06 ACCGCCTACGCAACC 15 YY2_C2H2_full_monomeric_11_1 SELEX - 49126522 49126532 4.0E-06 GCCGCCATCTT 11 YY2_C2H2_full_monomeric_11_1 SELEX - 49126544 49126554 4.0E-06 GCCGCCATCTT 11 YY2_C2H2_full_monomeric_11_1 SELEX - 49130153 49130163 4.0E-06 TCCGCCATTTC 11 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 49129927 49129936 5.0E-06 CCCACTTAAA 10 Foxd3_MA0041.1 JASPAR + 49130069 49130080 7.0E-06 TATTATTGTTTT 12 NFIB_NFI_full_dimeric_15_1 SELEX + 49125637 49125651 3.0E-06 TTGGCTATCCGCCAG 15 GLI2_C2H2_DBD_monomeric_12_1 SELEX + 49126907 49126918 1.0E-06 GCGACCACCCAG 12 EGR2_C2H2_DBD_monomeric_11_1 SELEX + 49125880 49125890 4.0E-06 CCGCCTACGCA 11 ZNF410_C2H2_DBD_monomeric_17_1 SELEX + 49125579 49125595 7.0E-06 CTCATCCCATACTAGTA 17 SPI1_ETS_full_monomeric_14_1 SELEX - 49125996 49126009 6.0E-06 CTAATGCGGAAGTC 14 TBX1_TBX_DBD_dimeric_20_1 SELEX - 49125469 49125488 3.0E-06 TGGTGTGAAGGGAGGCATGA 20 V_MTF1_01_M01242 TRANSFAC + 49126893 49126912 4.0E-06 CTGGGCTTCCTTTTGCGACC 20 V_OSR1_03_M02784 TRANSFAC - 49125864 49125879 4.0E-06 TGGAACGGTAGCTAGA 16 V_ZFP410_04_M02936 TRANSFAC + 49126081 49126097 8.0E-06 TCATCCCGCCCCCTACA 17 V_NFY_Q6_M00185 TRANSFAC - 49125457 49125467 6.0E-06 TAGCCAATAAG 11 V_NFY_Q6_M00185 TRANSFAC - 49125633 49125643 3.0E-06 TAGCCAATGAG 11 V_FOXD3_01_M00130 TRANSFAC + 49130069 49130080 9.0E-06 TATTATTGTTTT 12 V_BCL6_01_M01183 TRANSFAC + 49129914 49129929 4.0E-06 CTTGTGATATTATTTT 16 V_ATF4_Q6_M01864 TRANSFAC + 49126155 49126163 6.0E-06 TACGTCATC 9 V_SOX5_01_M00042 TRANSFAC - 49130071 49130080 9.0E-06 AAAACAATAA 10 V_SRY_02_M00160 TRANSFAC - 49130070 49130081 1.0E-06 TAAAACAATAAT 12 V_CEBP_C_M00201 TRANSFAC - 49130055 49130072 3.0E-06 AATATGTTGAAATGTACT 18 V_GLI1_Q2_M01042 TRANSFAC + 49126909 49126918 3.0E-06 GACCACCCAG 10 V_YY1_Q6_M00793 TRANSFAC - 49126521 49126529 7.0E-06 GCCATCTTG 9 V_YY1_Q6_M00793 TRANSFAC - 49126543 49126551 7.0E-06 GCCATCTTG 9 V_GABPA_04_M02858 TRANSFAC + 49125513 49125528 7.0E-06 CTTTTTTCCCCATCTT 16 V_EGR1_02_M01972 TRANSFAC - 49125880 49125890 7.0E-06 TGCGTAGGCGG 11 V_PU1_Q4_M01172 TRANSFAC - 49126605 49126623 9.0E-06 AGCCTCCTCTTCCTCCTCC 19 V_TCFAP2E_04_M02926 TRANSFAC - 49129921 49129934 8.0E-06 CACTTAAAATAATA 14 V_CEBPB_01_M00109 TRANSFAC - 49130058 49130071 0.0E+00 ATATGTTGAAATGT 14 V_MEF2A_Q6_M02024 TRANSFAC + 49129924 49129933 6.0E-06 TATTTTAAGT 10 V_STAT4_Q4_M01666 TRANSFAC - 49129918 49129931 7.0E-06 TTAAAATAATATCA 14 V_REX1_01_M01695 TRANSFAC - 49125371 49125380 1.0E-06 GCAGCCATTA 10 V_REX1_01_M01695 TRANSFAC + 49125813 49125822 3.0E-06 GCAGCCATTG 10 V_TAL1_GATA1_01_M02243 TRANSFAC - 49129959 49129976 9.0E-06 CTGAGATCGAAAGATAAA 18 V_TGIF2_01_M01407 TRANSFAC - 49129945 49129960 5.0E-06 AAGAAGCTATCAAAAA 16 V_NFY_C_M00209 TRANSFAC + 49125456 49125469 5.0E-06 CCTTATTGGCTACT 14 V_ELF4_04_M02850 TRANSFAC - 49130069 49130085 9.0E-06 GTTCTAAAACAATAATA 17 V_COMP1_01_M00057 TRANSFAC - 49125943 49125966 7.0E-06 AAAGTGGAATGGCTACAGGCGATG 24 V_SOX13_03_M02797 TRANSFAC - 49130068 49130083 0.0E+00 TCTAAAACAATAATAT 16 V_SOX7_03_M02807 TRANSFAC - 49130064 49130085 6.0E-06 GTTCTAAAACAATAATATGTTG 22 V_HELIOSA_02_M01004 TRANSFAC - 49125364 49125374 0.0E+00 ATTAGGAAAAA 11 V_EGR1_01_M00243 TRANSFAC - 49125880 49125891 1.0E-06 TTGCGTAGGCGG 12 V_PR_Q2_M00960 TRANSFAC - 49125852 49125861 7.0E-06 GAGAGAACAG 10 V_ZIC3_01_M00450 TRANSFAC - 49126909 49126917 6.0E-06 TGGGTGGTC 9 V_ZFP105_03_M02827 TRANSFAC - 49130068 49130082 9.0E-06 CTAAAACAATAATAT 15 V_NFAT_Q6_M00302 TRANSFAC - 49125363 49125374 5.0E-06 ATTAGGAAAAAT 12 V_NGFIC_01_M00244 TRANSFAC - 49125880 49125891 1.0E-06 TTGCGTAGGCGG 12 V_NKX26_01_M01322 TRANSFAC - 49129924 49129939 7.0E-06 CTGCCCACTTAAAATA 16 V_SOX1_04_M02906 TRANSFAC + 49130068 49130082 8.0E-06 ATATTATTGTTTTAG 15 V_SP4_03_M02810 TRANSFAC + 49126082 49126098 2.0E-06 CATCCCGCCCCCTACAC 17 V_SP1_Q6_M00196 TRANSFAC - 49126082 49126094 9.0E-06 AGGGGGCGGGATG 13 V_FOXK1_04_M02856 TRANSFAC - 49129915 49129929 8.0E-06 AAAATAATATCACAA 15 V_FOXK1_04_M02856 TRANSFAC - 49130066 49130080 5.0E-06 AAAACAATAATATGT 15 V_NKX22_02_M01372 TRANSFAC - 49129923 49129939 8.0E-06 CTGCCCACTTAAAATAA 17 V_SOX18_03_M02801 TRANSFAC + 49130069 49130084 0.0E+00 TATTATTGTTTTAGAA 16 V_YY1_Q6_02_M01035 TRANSFAC - 49126522 49126532 7.0E-06 GCCGCCATCTT 11 V_YY1_Q6_02_M01035 TRANSFAC - 49126544 49126554 7.0E-06 GCCGCCATCTT 11 V_REX1_03_M01744 TRANSFAC + 49126522 49126533 1.0E-06 AAGATGGCGGCG 12 V_REX1_03_M01744 TRANSFAC + 49126544 49126555 1.0E-06 AAGATGGCGGCG 12 Tal1_Gata1_MA0140.1 JASPAR - 49129959 49129976 9.0E-06 CTGAGATCGAAAGATAAA 18 V_SPIB_01_M01204 TRANSFAC - 49125993 49126009 8.0E-06 CTAATGCGGAAGTCTGA 17 V_ZIC1_01_M00448 TRANSFAC - 49126909 49126917 6.0E-06 TGGGTGGTC 9 V_STAF_02_M00264 TRANSFAC + 49125517 49125537 1.0E-05 TTTCCCCATCTTGCCTCCAAG 21 V_EGR2_01_M00246 TRANSFAC - 49125880 49125891 1.0E-06 TTGCGTAGGCGG 12 V_SOX9_B1_M00410 TRANSFAC - 49130069 49130082 7.0E-06 CTAAAACAATAATA 14 V_YY1_03_M02044 TRANSFAC - 49126521 49126532 1.0E-06 GCCGCCATCTTG 12 V_YY1_03_M02044 TRANSFAC - 49126543 49126554 1.0E-06 GCCGCCATCTTG 12 V_CAAT_01_M00254 TRANSFAC - 49125458 49125469 3.0E-06 AGTAGCCAATAA 12 V_SOX15_03_M02799 TRANSFAC - 49130067 49130083 3.0E-06 TCTAAAACAATAATATG 17 V_ALPHACP1_01_M00687 TRANSFAC - 49125633 49125643 1.0E-06 TAGCCAATGAG 11 V_GLI2_01_M01703 TRANSFAC + 49126909 49126919 1.0E-05 GACCACCCAGC 11 V_NKX25_03_M01414 TRANSFAC - 49129924 49129939 4.0E-06 CTGCCCACTTAAAATA 16 V_TAL1_01_M01591 TRANSFAC + 49129075 49129087 1.0E-06 TTTCCTTCTCTGC 13 V_T3R_Q6_M00963 TRANSFAC + 49125595 49125603 3.0E-06 ACTGTCCTT 9 V_NFY_01_M00287 TRANSFAC - 49125454 49125469 1.0E-05 AGTAGCCAATAAGGAG 16 V_NFY_01_M00287 TRANSFAC - 49125630 49125645 1.0E-05 GATAGCCAATGAGGGA 16 V_NFY_01_M00287 TRANSFAC - 49126250 49126265 8.0E-06 GGCAGCCAATGGGAAG 16 V_OSR2_03_M02785 TRANSFAC - 49125864 49125879 7.0E-06 TGGAACGGTAGCTAGA 16 V_PLZF_02_M01075 TRANSFAC - 49130065 49130093 4.0E-06 GCACACAGGTTCTAAAACAATAATATGTT 29 V_SOX8_03_M02808 TRANSFAC + 49130067 49130083 4.0E-06 CATATTATTGTTTTAGA 17 V_FOXO1_04_M01969 TRANSFAC - 49130062 49130081 0.0E+00 TAAAACAATAATATGTTGAA 20 V_CREB_02_M00113 TRANSFAC - 49126154 49126165 3.0E-06 CGGATGACGTAC 12 V_SOX12_03_M02796 TRANSFAC + 49130071 49130084 2.0E-06 TTATTGTTTTAGAA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 49126277 49126290 5.0E-06 GGCGGGGGCAGGGC 14 V_NFYA_Q5_M02106 TRANSFAC - 49125630 49125643 3.0E-06 TAGCCAATGAGGGA 14 V_NFYA_Q5_M02106 TRANSFAC - 49126114 49126127 1.0E-05 CAGCCAATGGGGAT 14 V_NFYA_Q5_M02106 TRANSFAC - 49126250 49126263 1.0E-06 CAGCCAATGGGAAG 14 V_ZIC2_01_M00449 TRANSFAC - 49126909 49126917 6.0E-06 TGGGTGGTC 9 V_EGR3_01_M00245 TRANSFAC - 49125880 49125891 2.0E-06 TTGCGTAGGCGG 12 V_NKX21_01_M01312 TRANSFAC - 49129924 49129939 7.0E-06 CTGCCCACTTAAAATA 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.