Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ARHGEF39 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84904 Rho guanine nucleotide exchange factor (GEF) 39 chr9 - 35664778 - 35670278 35665278 Transcription Factor Binding Sites   Download all TFBS in the ARHGEF39 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_16_1 SELEX - 35666723 35666738 9.0E-06 AACTGTTTTCAGTGTG 16 MYF6_bHLH_full_dimeric_10_1 SELEX - 35666807 35666816 9.0E-06 AGCAGCTGTT 10 HSFY2_HSF_DBD_dimer-of-dimers_15_1 SELEX + 35666288 35666302 1.0E-06 TTCTAAGAATTCTAA 15 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX + 35661272 35661289 0.0E+00 CTGTCCTTATTAGGACAA 18 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX - 35661272 35661289 0.0E+00 TTGTCCTAATAAGGACAG 18 FOXA1_MA0148.1 JASPAR - 35669455 35669465 4.0E-06 TGTTTGCTCAT 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 35666154 35666165 5.0E-06 AAAAAAAACAAA 12 ELF4_ETS_full_monomeric_12_1 SELEX - 35665186 35665197 9.0E-06 CAGCCGGAAGTG 12 EBF1_EBF_full_dimeric_14_1 SELEX + 35666750 35666763 1.0E-06 ATTCCCTGGGGACC 14 EBF1_EBF_full_dimeric_14_1 SELEX - 35666750 35666763 2.0E-06 GGTCCCCAGGGAAT 14 GRHL1_CP2_full_dimeric_12_1 SELEX + 35669576 35669587 6.0E-06 CAAACCTGTTTG 12 GRHL1_CP2_full_dimeric_12_1 SELEX - 35669576 35669587 4.0E-06 CAAACAGGTTTG 12 STAT1_MA0137.2 JASPAR - 35666294 35666308 9.0E-06 CCTTTCTTAGAATTC 15 NR2F1_MA0017.1 JASPAR - 35669616 35669629 7.0E-06 TGGACTCTGACCCT 14 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX + 35661272 35661289 0.0E+00 CTGTCCTTATTAGGACAA 18 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX - 35661272 35661289 0.0E+00 TTGTCCTAATAAGGACAG 18 Tcfcp2l1_MA0145.1 JASPAR + 35669604 35669617 8.0E-06 CCAGCATGATCCAG 14 Ar_MA0007.1 JASPAR - 35665480 35665501 4.0E-06 GATAGGACATTAAGTTCCTGCC 22 ELF3_ETS_full_monomeric_13_1 SELEX - 35665185 35665197 5.0E-06 CAGCCGGAAGTGT 13 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 35666807 35666816 1.0E-06 AACAGCTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 35666807 35666816 3.0E-06 AGCAGCTGTT 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 35666805 35666818 6.0E-06 GGAACAGCTGCTAA 14 ELK1_ETS_full_dimeric_17_1 SELEX + 35665186 35665202 8.0E-06 CACTTCCGGCTGCAGTC 17 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 35666719 35666733 4.0E-06 AAGACACACTGAAAA 15 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 35666285 35666301 0.0E+00 ACATTCTAAGAATTCTA 17 Foxd3_MA0041.1 JASPAR - 35666155 35666166 1.0E-06 TTTTGTTTTTTT 12 INSM1_MA0155.1 JASPAR + 35669790 35669801 7.0E-06 TGTCAGGGGCCA 12 EHF_ETS_full_monomeric_12_1 SELEX - 35665186 35665197 7.0E-06 CAGCCGGAAGTG 12 SRF_MADS_full_dimeric_16_1 SELEX + 35661273 35661288 4.0E-06 TGTCCTTATTAGGACA 16 SRF_MADS_full_dimeric_16_1 SELEX - 35661273 35661288 2.0E-06 TGTCCTAATAAGGACA 16 HNF4A_MA0114.1 JASPAR + 35669617 35669629 9.0E-06 GGGTCAGAGTCCA 13 FOXI1_forkhead_full_dimeric_17_1 SELEX - 35661214 35661230 1.0E-05 GTGTGTACAACCAACTA 17 TEAD1_TEA_full_dimeric_17_1 SELEX - 35666283 35666299 7.0E-06 GAATTCTTAGAATGTCA 17 TEAD1_TEA_full_dimeric_17_1 SELEX + 35666285 35666301 0.0E+00 ACATTCTAAGAATTCTA 17 GABPA_ETS_full_monomeric_10_1 SELEX - 35665186 35665195 9.0E-06 GCCGGAAGTG 10 ELF3_ETS_DBD_monomeric_12_1 SELEX - 35665186 35665197 7.0E-06 CAGCCGGAAGTG 12 GRHL1_CP2_DBD_dimeric_10_1 SELEX + 35669577 35669586 7.0E-06 AAACCTGTTT 10 GRHL1_CP2_DBD_dimeric_10_1 SELEX - 35669577 35669586 8.0E-06 AAACAGGTTT 10 RUNX1_MA0002.2 JASPAR - 35669478 35669488 3.0E-06 CTCTGTGGTTA 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 35666155 35666167 6.0E-06 AAAAAAACAAAAT 13 MSC_bHLH_full_dimeric_10_1 SELEX + 35666807 35666816 4.0E-06 AACAGCTGCT 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 35666151 35666163 8.0E-06 ATTAAAAAAAACA 13 E2F3_E2F_DBD_dimeric_18_3 SELEX - 35669891 35669908 7.0E-06 ATTTCTGGAGCCAAATTC 18 V_DMRT4_01_M01149 TRANSFAC - 35669219 35669231 4.0E-06 GCTGTAACAAATT 13 V_HOXA9_01_M01351 TRANSFAC + 35666145 35666161 2.0E-06 AAAGTTATTAAAAAAAA 17 V_FOXP1_01_M00987 TRANSFAC - 35666139 35666158 8.0E-06 TTTTTAATAACTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 35669974 35669993 3.0E-06 TCATATATATTTTGTTGTAC 20 V_SRF_Q6_M00186 TRANSFAC + 35661274 35661287 5.0E-06 GTCCTTATTAGGAC 14 V_SRF_Q6_M00186 TRANSFAC - 35661274 35661287 1.0E-06 GTCCTAATAAGGAC 14 V_E2A_Q6_01_M02088 TRANSFAC + 35666806 35666818 8.0E-06 GAACAGCTGCTAA 13 V_STAT5A_Q6_M01890 TRANSFAC + 35666293 35666305 9.0E-06 AGAATTCTAAGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 35666297 35666309 4.0E-06 TCCTTTCTTAGAA 13 V_DBX1_01_M01483 TRANSFAC + 35666142 35666158 5.0E-06 AAAAAAGTTATTAAAAA 17 V_DBX1_01_M01483 TRANSFAC + 35666145 35666161 2.0E-06 AAAGTTATTAAAAAAAA 17 V_GAF_Q6_M01209 TRANSFAC - 35666207 35666217 9.0E-06 CAGATTCCTAG 11 V_IPF1_02_M01234 TRANSFAC + 35669813 35669822 4.0E-06 AGCTAATGAC 10 V_TCF3_01_M01594 TRANSFAC - 35666155 35666167 4.0E-06 ATTTTGTTTTTTT 13 V_EBF_Q6_M00977 TRANSFAC - 35666752 35666762 8.0E-06 GTCCCCAGGGA 11 V_ALX4_01_M00619 TRANSFAC + 35669528 35669540 7.0E-06 CCTGAGTATACTC 13 V_BCL6B_03_M02740 TRANSFAC + 35666285 35666300 1.0E-06 ACATTCTAAGAATTCT 16 V_BCL6B_03_M02740 TRANSFAC - 35666293 35666308 6.0E-06 CCTTTCTTAGAATTCT 16 V_FOXD3_01_M00130 TRANSFAC - 35666155 35666166 1.0E-06 TTTTGTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC - 35666143 35666158 1.0E-06 TTTTTAATAACTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 35666144 35666159 7.0E-06 TTTTTTAATAACTTTT 16 V_BCL6_01_M01183 TRANSFAC - 35666145 35666160 0.0E+00 TTTTTTTAATAACTTT 16 V_BCL6_01_M01183 TRANSFAC - 35666146 35666161 8.0E-06 TTTTTTTTAATAACTT 16 V_COE1_Q6_M01871 TRANSFAC - 35666748 35666761 6.0E-06 TCCCCAGGGAATTA 14 V_FOXO4_02_M00476 TRANSFAC - 35666154 35666167 5.0E-06 ATTTTGTTTTTTTT 14 V_MMEF2_Q6_M00405 TRANSFAC + 35666148 35666163 2.0E-06 GTTATTAAAAAAAACA 16 V_MEF2_02_M00231 TRANSFAC - 35666144 35666165 9.0E-06 TTTGTTTTTTTTAATAACTTTT 22 V_EVI1_02_M00079 TRANSFAC - 35669741 35669751 8.0E-06 ATACAAGACAG 11 V_FOXO3A_Q1_M01137 TRANSFAC + 35666156 35666167 3.0E-06 AAAAAACAAAAT 12 V_STAT5B_01_M00459 TRANSFAC - 35666285 35666299 5.0E-06 GAATTCTTAGAATGT 15 V_STAT5B_01_M00459 TRANSFAC - 35666294 35666308 6.0E-06 CCTTTCTTAGAATTC 15 V_FOXJ1_03_M02750 TRANSFAC + 35666154 35666169 3.0E-06 AAAAAAAACAAAATGT 16 V_HNF4A_03_M02220 TRANSFAC + 35669617 35669629 9.0E-06 GGGTCAGAGTCCA 13 V_HOXC6_01_M01406 TRANSFAC + 35666144 35666160 3.0E-06 AAAAGTTATTAAAAAAA 17 V_TR4_Q2_M01725 TRANSFAC + 35665444 35665454 3.0E-06 CCTGAACTTTG 11 V_AP4_Q6_01_M00927 TRANSFAC + 35666807 35666815 1.0E-05 AACAGCTGC 9 V_TCFAP2E_04_M02926 TRANSFAC + 35666149 35666162 4.0E-06 TTATTAAAAAAAAC 14 V_CDX_Q5_M00991 TRANSFAC + 35666139 35666156 2.0E-06 AAAAAAAAAGTTATTAAA 18 V_CDX_Q5_M00991 TRANSFAC - 35669975 35669992 1.0E-06 TACAACAAAATATATATG 18 V_LDSPOLYA_B_M00317 TRANSFAC - 35669454 35669469 3.0E-06 CAAGTGTTTGCTCATG 16 V_P53_02_M00272 TRANSFAC + 35669405 35669414 2.0E-06 AGACATGTTT 10 V_P53_02_M00272 TRANSFAC - 35669405 35669414 9.0E-06 AAACATGTCT 10 V_BCL6_02_M01185 TRANSFAC - 35666296 35666309 7.0E-06 TCCTTTCTTAGAAT 14 V_SRF_C_M00215 TRANSFAC - 35661272 35661286 1.0E-06 TCCTAATAAGGACAG 15 V_SRF_C_M00215 TRANSFAC + 35661275 35661289 4.0E-06 TCCTTATTAGGACAA 15 V_ELF4_04_M02850 TRANSFAC + 35666148 35666164 0.0E+00 GTTATTAAAAAAAACAA 17 V_ELF4_04_M02850 TRANSFAC + 35666149 35666165 7.0E-06 TTATTAAAAAAAACAAA 17 V_ELF4_04_M02850 TRANSFAC + 35666150 35666166 4.0E-06 TATTAAAAAAAACAAAA 17 V_ELF4_04_M02850 TRANSFAC + 35666151 35666167 7.0E-06 ATTAAAAAAAACAAAAT 17 V_FOXA2_02_M02853 TRANSFAC + 35666154 35666168 2.0E-06 AAAAAAAACAAAATG 15 V_IPF1_Q4_M00436 TRANSFAC + 35669812 35669823 4.0E-06 AAGCTAATGACA 12 V_ZFP105_03_M02827 TRANSFAC + 35666147 35666161 9.0E-06 AGTTATTAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 35666150 35666164 5.0E-06 TATTAAAAAAAACAA 15 V_ZFP105_03_M02827 TRANSFAC + 35666151 35666165 9.0E-06 ATTAAAAAAAACAAA 15 V_ZFP105_03_M02827 TRANSFAC + 35666153 35666167 0.0E+00 TAAAAAAAACAAAAT 15 V_RUNX1_01_M02257 TRANSFAC - 35669478 35669488 3.0E-06 CTCTGTGGTTA 11 V_RXRA_03_M02791 TRANSFAC + 35669418 35669434 1.0E-05 TAACATGACCCCTCAGT 17 V_COUP_01_M00158 TRANSFAC - 35669616 35669629 7.0E-06 TGGACTCTGACCCT 14 V_TEF_Q6_M00672 TRANSFAC + 35669409 35669420 4.0E-06 ATGTTTTAGTAA 12 V_NKX61_01_M00424 TRANSFAC - 35666146 35666158 6.0E-06 TTTTTAATAACTT 13 V_XFD3_01_M00269 TRANSFAC + 35669560 35669573 9.0E-06 TCAGGAAACAATAA 14 V_AMEF2_Q6_M00403 TRANSFAC + 35666148 35666165 0.0E+00 GTTATTAAAAAAAACAAA 18 V_HOXB9_01_M01426 TRANSFAC + 35666145 35666160 9.0E-06 AAAGTTATTAAAAAAA 16 V_ER81_02_M02065 TRANSFAC - 35665186 35665195 1.0E-05 GCCGGAAGTG 10 V_FOXK1_04_M02856 TRANSFAC + 35669564 35669578 1.0E-05 GAAACAATAACTCAA 15 V_E47_02_M00071 TRANSFAC - 35666804 35666819 3.0E-06 TTTAGCAGCTGTTCCA 16 V_HNF3_Q6_M00791 TRANSFAC + 35669455 35669467 4.0E-06 ATGAGCAAACACT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 35669455 35669465 6.0E-06 TGTTTGCTCAT 11 V_HMX1_01_M00433 TRANSFAC - 35669204 35669213 8.0E-06 CAAGTGGGTA 10 V_ASCL2_03_M02737 TRANSFAC - 35666803 35666819 0.0E+00 TTTAGCAGCTGTTCCAG 17 V_GADP_01_M01258 TRANSFAC + 35665186 35665197 1.0E-06 CACTTCCGGCTG 12 V_OCT1_04_M00138 TRANSFAC + 35666143 35666165 3.0E-06 AAAAAGTTATTAAAAAAAACAAA 23 V_PEBP_Q6_M00984 TRANSFAC + 35669476 35669490 4.0E-06 AATAACCACAGAGAG 15 V_MEF2_Q6_01_M00941 TRANSFAC - 35666152 35666163 2.0E-06 TGTTTTTTTTAA 12 V_NCX_02_M01420 TRANSFAC + 35666145 35666161 3.0E-06 AAAGTTATTAAAAAAAA 17 V_NCX_02_M01420 TRANSFAC - 35666146 35666162 2.0E-06 GTTTTTTTTAATAACTT 17 V_HNF4_DR1_Q3_M00764 TRANSFAC + 35665446 35665458 3.0E-06 TGAACTTTGAGTC 13 V_SRF_Q5_02_M01007 TRANSFAC + 35661271 35661289 3.0E-06 GCTGTCCTTATTAGGACAA 19 V_STAT4_Q5_M02117 TRANSFAC + 35666297 35666306 1.0E-06 TTCTAAGAAA 10 V_TCF1_07_M02919 TRANSFAC + 35669715 35669728 1.0E-05 AGAGCTGGATTAGT 14 V_TBP_06_M02814 TRANSFAC - 35666146 35666161 3.0E-06 TTTTTTTTAATAACTT 16 V_TBP_06_M02814 TRANSFAC + 35669973 35669988 6.0E-06 GTCATATATATTTTGT 16 V_INSM1_01_M02268 TRANSFAC + 35669790 35669801 7.0E-06 TGTCAGGGGCCA 12 V_SRF_03_M01304 TRANSFAC - 35661275 35661287 4.0E-06 GTCCTAATAAGGA 13 V_AP1_Q2_01_M00924 TRANSFAC - 35665448 35665459 0.0E+00 TGACTCAAAGTT 12 V_HNF4A_02_M02868 TRANSFAC + 35669618 35669633 5.0E-06 GGTCAGAGTCCACATT 16 V_FOXO1_Q5_M01216 TRANSFAC + 35666157 35666165 1.0E-06 AAAAACAAA 9 V_ELF1_Q6_M00746 TRANSFAC - 35661343 35661354 5.0E-06 ATACGAGGAAAA 12 V_ZFP105_04_M02931 TRANSFAC - 35666144 35666160 7.0E-06 TTTTTTTAATAACTTTT 17 V_ZIC2_05_M02940 TRANSFAC - 35669385 35669399 8.0E-06 TATCCCAGCATGGCA 15 V_MTF1_06_M02882 TRANSFAC + 35666147 35666160 1.0E-06 AGTTATTAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 35666149 35666162 5.0E-06 TTATTAAAAAAAAC 14 V_MTF1_06_M02882 TRANSFAC + 35666150 35666163 6.0E-06 TATTAAAAAAAACA 14 V_FAC1_01_M00456 TRANSFAC + 35666154 35666167 3.0E-06 AAAAAAAACAAAAT 14 V_TAL1_01_M01591 TRANSFAC - 35661315 35661327 1.0E-05 CTATCTTCTCTGC 13 V_CEBPA_01_M00116 TRANSFAC - 35669410 35669423 5.0E-06 ATGTTACTAAAACA 14 V_FOXL1_02_M02857 TRANSFAC - 35669189 35669204 2.0E-06 AGCTTAAAACAACAGA 16 V_FOXL1_02_M02857 TRANSFAC - 35669981 35669996 1.0E-06 ATTGTACAACAAAATA 16 V_FOXL1_04_M02753 TRANSFAC + 35666152 35666168 3.0E-06 TTAAAAAAAACAAAATG 17 V_FOXJ3_06_M02855 TRANSFAC - 35669976 35669992 4.0E-06 TACAACAAAATATATAT 17 V_NCX_01_M00484 TRANSFAC + 35669215 35669224 2.0E-06 TGGTAATTTG 10 V_HNF4_Q6_01_M01031 TRANSFAC + 35669617 35669630 6.0E-06 GGGTCAGAGTCCAC 14 V_PXR_Q2_M00964 TRANSFAC + 35666145 35666156 8.0E-06 AAAGTTATTAAA 12 V_MEIS1_01_M00419 TRANSFAC + 35669816 35669827 4.0E-06 TAATGACAGAGC 12 V_TCF7_04_M02921 TRANSFAC + 35666147 35666161 0.0E+00 AGTTATTAAAAAAAA 15 V_FOXO3_01_M00477 TRANSFAC - 35666154 35666167 6.0E-06 ATTTTGTTTTTTTT 14 V_SRF_01_M00152 TRANSFAC + 35661272 35661289 2.0E-06 CTGTCCTTATTAGGACAA 18 V_SRF_01_M00152 TRANSFAC - 35661272 35661289 1.0E-06 TTGTCCTAATAAGGACAG 18 V_MEF3_B_M00319 TRANSFAC - 35669416 35669428 1.0E-05 GGGTCATGTTACT 13 V_SRF_02_M01257 TRANSFAC - 35661270 35661287 1.0E-06 GTCCTAATAAGGACAGCT 18 V_SRF_02_M01257 TRANSFAC + 35661274 35661291 6.0E-06 GTCCTTATTAGGACAAAA 18 V_STAT5A_01_M00457 TRANSFAC + 35666285 35666299 7.0E-06 ACATTCTAAGAATTC 15 V_SOX14_04_M02901 TRANSFAC - 35669750 35669766 6.0E-06 GAATTGGATGGGCCTAT 17 V_SRF_06_M02916 TRANSFAC + 35666148 35666164 0.0E+00 GTTATTAAAAAAAACAA 17 V_SRF_06_M02916 TRANSFAC + 35666149 35666165 1.0E-06 TTATTAAAAAAAACAAA 17 V_SRF_06_M02916 TRANSFAC + 35666150 35666166 0.0E+00 TATTAAAAAAAACAAAA 17 V_SRF_06_M02916 TRANSFAC + 35666151 35666167 0.0E+00 ATTAAAAAAAACAAAAT 17 V_SRF_06_M02916 TRANSFAC + 35666152 35666168 4.0E-06 TTAAAAAAAACAAAATG 17 V_SATB1_01_M01232 TRANSFAC + 35666150 35666161 9.0E-06 TATTAAAAAAAA 12 V_SATB1_01_M01232 TRANSFAC + 35669412 35669423 5.0E-06 TTTTAGTAACAT 12 V_HOXD8_01_M01432 TRANSFAC + 35666145 35666161 9.0E-06 AAAGTTATTAAAAAAAA 17 V_IPF1_Q4_01_M01013 TRANSFAC - 35669811 35669825 1.0E-06 TCTGTCATTAGCTTG 15 V_FOXO1_01_M00473 TRANSFAC + 35666156 35666165 2.0E-06 AAAAAACAAA 10 V_PAX4_02_M00377 TRANSFAC - 35669216 35669226 6.0E-06 AACAAATTACC 11 V_SRY_05_M02917 TRANSFAC + 35669560 35669576 2.0E-06 TCAGGAAACAATAACTC 17 V_MEF2A_05_M01301 TRANSFAC + 35666147 35666158 6.0E-06 AGTTATTAAAAA 12 V_FOXO4_01_M00472 TRANSFAC + 35666157 35666167 1.0E-05 AAAAACAAAAT 11 V_HOXD10_01_M01375 TRANSFAC + 35666146 35666162 2.0E-06 AAGTTATTAAAAAAAAC 17 V_COUP_DR1_Q6_M00765 TRANSFAC + 35665446 35665458 3.0E-06 TGAACTTTGAGTC 13 V_BRCA_01_M01082 TRANSFAC + 35669188 35669195 1.0E-05 TTCTGTTG 8 V_GLIS2_04_M02863 TRANSFAC + 35666148 35666161 2.0E-06 GTTATTAAAAAAAA 14 V_STAT1_05_M01260 TRANSFAC + 35666294 35666315 1.0E-06 GAATTCTAAGAAAGGAATAATG 22 V_FOXK1_03_M02752 TRANSFAC + 35666152 35666168 1.0E-05 TTAAAAAAAACAAAATG 17 V_AP2_Q3_M00800 TRANSFAC + 35669316 35669331 4.0E-06 GCCCCCAAGCTATGGC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.