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LINGO1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84894 leucine rich repeat and Ig domain containing 1 chr15 - 77924209 - 77929709 77924709 Transcription Factor Binding Sites   Download all TFBS in the LINGO1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 77925946 77925964 0.0E+00 TGTCCAGCAGAGGGCGGCA 19 CTCF_MA0139.1 JASPAR + 77926005 77926023 0.0E+00 TGGCCAGCAGAGGGCAGCG 19 CTCF_MA0139.1 JASPAR + 77926948 77926966 3.0E-06 GGACCAGCAGGGGGCAGGC 19 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 77926291 77926299 2.0E-06 CTAATAAAA 9 TBX1_TBX_DBD_dimeric_20_2 SELEX - 77925604 77925623 1.0E-06 ATCACACACAACGGTGTGCG 20 POU2F1_POU_DBD_dimeric_14_1 SELEX - 77921343 77921356 5.0E-06 CTAACATATGCAAA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 77925665 77925681 1.0E-06 GTTAACACGTGTAAACA 17 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 77921342 77921350 8.0E-06 TATGCAAAA 9 FOXO3_MA0157.1 JASPAR - 77925665 77925672 7.0E-06 TGTAAACA 8 Tp53_p53l_DBD_dimeric_18_2 SELEX - 77925635 77925652 8.0E-06 CACATGCACACGCATGTG 18 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 77923425 77923435 1.0E-05 AGCCCCAGGCT 11 POU2F3_POU_DBD_monomeric_9_1 SELEX - 77921342 77921350 8.0E-06 TATGCAAAA 9 POU1F1_POU_DBD_monomeric_14_1 SELEX - 77926292 77926305 7.0E-06 GTTATTCTAATAAA 14 SOX9_HMG_DBD_monomeric_9_1 SELEX - 77926827 77926835 4.0E-06 GAACAATAG 9 POU2F2_POU_DBD_monomeric_11_1 SELEX - 77921341 77921351 8.0E-06 ATATGCAAAAC 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 77923425 77923435 9.0E-06 AGCCCCAGGCT 11 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 77921342 77921350 7.0E-06 TATGCAAAA 9 CLOCK_bHLH_DBD_dimeric_10_1 SELEX - 77925669 77925678 2.0E-06 AACACGTGTA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 77926291 77926300 9.0E-06 TCTAATAAAA 10 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX + 77925734 77925751 6.0E-06 AGGGTTGTTTGGAGGGCG 18 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 77926291 77926299 7.0E-06 CTAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 77926290 77926299 2.0E-06 CTAATAAAAC 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 77921343 77921356 9.0E-06 CTAACATATGCAAA 14 SP1_MA0079.2 JASPAR - 77926415 77926424 3.0E-06 CCCCTCCCCC 10 POU2F3_POU_DBD_dimeric_12_1 SELEX - 77921344 77921355 9.0E-06 TAACATATGCAA 12 RARA_nuclearreceptor_full_dimeric_17_1 SELEX - 77920084 77920100 5.0E-06 AGTGCAAACAAAGGACA 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 77926290 77926299 2.0E-06 CTAATAAAAC 10 POU3F1_POU_DBD_monomeric_12_1 SELEX - 77921340 77921351 1.0E-05 ATATGCAAAACA 12 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 77923425 77923435 8.0E-06 AGCCCCAGGCT 11 MTF1_C2H2_DBD_monomeric_14_1 SELEX + 77925503 77925516 5.0E-06 TCTGCACACGGCCG 14 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 77921344 77921355 8.0E-06 TAACATATGCAA 12 Pou5f1_MA0142.1 JASPAR - 77926363 77926377 8.0E-06 TATTCATGTGCTAAT 15 FOXI1_forkhead_full_dimeric_17_1 SELEX + 77920090 77920106 7.0E-06 TTGTTTGCACTAAACAT 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 77926290 77926299 2.0E-06 CTAATAAAAC 10 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 77921343 77921360 8.0E-06 TTTGCATATGTTAGCACA 18 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 77921343 77921360 1.0E-06 TGTGCTAACATATGCAAA 18 SOX9_MA0077.1 JASPAR - 77926827 77926835 9.0E-06 GAACAATAG 9 POU3F2_POU_DBD_monomeric_12_1 SELEX - 77921340 77921351 9.0E-06 ATATGCAAAACA 12 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 77926291 77926299 9.0E-06 CTAATAAAA 9 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 77923358 77923372 6.0E-06 AAGGACAAAGGGTCT 15 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 77923425 77923435 6.0E-06 AGCCCCAGGCT 11 RREB1_MA0073.1 JASPAR - 77925352 77925371 2.0E-06 CACCCCACCACCACCATCAC 20 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 77926290 77926299 2.0E-06 CTAATAAAAC 10 V_ZFP187_03_M02830 TRANSFAC - 77926361 77926374 9.0E-06 TCATGTGCTAATGG 14 V_POU3F3_01_M03090 TRANSFAC - 77921338 77921354 6.0E-06 AACATATGCAAAACATT 17 V_POU3F3_01_M03090 TRANSFAC + 77921339 77921355 2.0E-06 ATGTTTTGCATATGTTA 17 V_FOXO3_02_M02270 TRANSFAC - 77925665 77925672 7.0E-06 TGTAAACA 8 V_SOX40_04_M02908 TRANSFAC + 77926291 77926306 9.0E-06 TTTTATTAGAATAACC 16 V_MTF1_Q4_M00650 TRANSFAC + 77925503 77925516 0.0E+00 TCTGCACACGGCCG 14 V_POU5F1_02_M02245 TRANSFAC - 77926363 77926377 8.0E-06 TATTCATGTGCTAAT 15 V_OCT1_Q5_01_M00930 TRANSFAC + 77921340 77921350 3.0E-06 TGTTTTGCATA 11 V_OCTAMER_01_M01324 TRANSFAC - 77921338 77921354 6.0E-06 AACATATGCAAAACATT 17 V_OCTAMER_01_M01324 TRANSFAC + 77921339 77921355 2.0E-06 ATGTTTTGCATATGTTA 17 V_OCT1_01_M00135 TRANSFAC - 77921337 77921355 6.0E-06 TAACATATGCAAAACATTT 19 V_POU2F3_01_M01476 TRANSFAC - 77926291 77926306 8.0E-06 GGTTATTCTAATAAAA 16 V_PLAG1_02_M01973 TRANSFAC + 77925774 77925789 5.0E-06 CCCCCGTCCTGGCCCT 16 V_GABPA_04_M02858 TRANSFAC + 77926228 77926243 6.0E-06 CCTTTTTCCCTATACT 16 V_STAT5B_01_M00459 TRANSFAC + 77920067 77920081 2.0E-06 GGGTTCCTGGAATTT 15 V_STAT5B_01_M00459 TRANSFAC - 77920067 77920081 6.0E-06 AAATTCCAGGAACCC 15 V_SP1_03_M02281 TRANSFAC - 77926415 77926424 3.0E-06 CCCCTCCCCC 10 V_NERF_Q2_M00531 TRANSFAC + 77923603 77923620 1.0E-06 GAGCAGGAAGGGGCTGTC 18 V_SP1_02_M01303 TRANSFAC - 77926548 77926558 5.0E-06 GGGGTGGGGAG 11 V_AP4_Q6_02_M01860 TRANSFAC - 77923372 77923384 1.0E-05 CCAGCTGCTCCCA 13 V_HOXD13_01_M01404 TRANSFAC - 77926287 77926302 1.0E-06 ATTCTAATAAAACTGG 16 V_HELIOSA_01_M01003 TRANSFAC - 77926231 77926241 1.0E-06 TATAGGGAAAA 11 V_HOXB13_01_M01467 TRANSFAC - 77926287 77926302 4.0E-06 ATTCTAATAAAACTGG 16 V_MYCMAX_02_M00123 TRANSFAC - 77925668 77925679 9.0E-06 TAACACGTGTAA 12 V_ZBP89_Q4_M01816 TRANSFAC - 77926414 77926423 4.0E-06 CCCTCCCCCA 10 V_HOXA3_07_M02869 TRANSFAC + 77926356 77926369 8.0E-06 ACAACCCATTAGCA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 77926546 77926559 7.0E-06 GGGGGTGGGGAGAG 14 V_SFPI1_04_M02896 TRANSFAC - 77920068 77920081 4.0E-06 AAATTCCAGGAACC 14 V_OCT1_04_M00138 TRANSFAC - 77921335 77921357 9.0E-06 GCTAACATATGCAAAACATTTAG 23 V_OCT1_04_M00138 TRANSFAC - 77926288 77926310 6.0E-06 TGATGGTTATTCTAATAAAACTG 23 V_PPARG_03_M00528 TRANSFAC - 77926225 77926241 2.0E-06 TATAGGGAAAAAGGTGA 17 V_ARID3A_04_M02735 TRANSFAC + 77926288 77926304 5.0E-06 CAGTTTTATTAGAATAA 17 V_CTCF_02_M01259 TRANSFAC + 77925943 77925962 1.0E-06 TCCTGTCCAGCAGAGGGCGG 20 V_CTCF_02_M01259 TRANSFAC + 77926002 77926021 0.0E+00 CAGTGGCCAGCAGAGGGCAG 20 V_CTCF_02_M01259 TRANSFAC + 77926945 77926964 0.0E+00 AATGGACCAGCAGGGGGCAG 20 V_OCT4_02_M01124 TRANSFAC - 77926362 77926376 5.0E-06 ATTCATGTGCTAATG 15 V_CTCF_01_M01200 TRANSFAC + 77925945 77925964 0.0E+00 CTGTCCAGCAGAGGGCGGCA 20 V_CTCF_01_M01200 TRANSFAC + 77926004 77926023 0.0E+00 GTGGCCAGCAGAGGGCAGCG 20 V_CTCF_01_M01200 TRANSFAC + 77926947 77926966 0.0E+00 TGGACCAGCAGGGGGCAGGC 20 V_OCT1_B_M00342 TRANSFAC - 77921341 77921350 6.0E-06 TATGCAAAAC 10 V_ISGF4G_04_M02875 TRANSFAC - 77921334 77921347 9.0E-06 GCAAAACATTTAGA 14 V_OCT_Q6_M00795 TRANSFAC + 77921340 77921350 3.0E-06 TGTTTTGCATA 11 V_ZIC2_05_M02940 TRANSFAC - 77926343 77926357 7.0E-06 GTTCCCAGCAGGGGA 15 V_HAND1E47_01_M00222 TRANSFAC - 77926261 77926276 1.0E-06 AAGGGCGTCTGGCTTC 16 V_TAL1_01_M01591 TRANSFAC + 77922608 77922620 1.0E-06 CTGCCTTATCTCC 13 V_TCFE2A_03_M02823 TRANSFAC - 77925665 77925681 9.0E-06 GTTAACACGTGTAAACA 17 V_OCT2_01_M01368 TRANSFAC - 77926291 77926306 5.0E-06 GGTTATTCTAATAAAA 16 V_CNOT3_01_M01253 TRANSFAC + 77925512 77925521 8.0E-06 GGCCGCGCCC 10 V_FOXL1_02_M02857 TRANSFAC - 77926289 77926304 5.0E-06 TTATTCTAATAAAACT 16 V_ZBTB4_04_M02929 TRANSFAC + 77923494 77923509 8.0E-06 AAGCCACTGGCATAAT 16 V_TCF7_04_M02921 TRANSFAC + 77926291 77926305 4.0E-06 TTTTATTAGAATAAC 15 V_FPM315_01_M01587 TRANSFAC + 77925269 77925280 0.0E+00 GAGGGAGGAGGG 12 V_FPM315_01_M01587 TRANSFAC + 77925284 77925295 0.0E+00 GAGGGAGGAGGG 12 V_FPM315_01_M01587 TRANSFAC - 77926337 77926348 4.0E-06 AGGGGAGGAGGG 12 V_NRSF_01_M00256 TRANSFAC - 77924598 77924618 4.0E-06 GGCAGCCCCGCGGCGAGTGCC 21 V_ZFP281_01_M01597 TRANSFAC + 77926414 77926424 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 77926550 77926560 1.0E-06 TGGGGGTGGGG 11 V_STAT5A_01_M00457 TRANSFAC + 77920067 77920081 5.0E-06 GGGTTCCTGGAATTT 15 V_STAT5A_01_M00457 TRANSFAC - 77920067 77920081 1.0E-06 AAATTCCAGGAACCC 15 V_NMYC_01_M00055 TRANSFAC + 77925668 77925679 6.0E-06 TTACACGTGTTA 12 V_NMYC_01_M00055 TRANSFAC - 77925668 77925679 2.0E-06 TAACACGTGTAA 12 V_SOX4_01_M01308 TRANSFAC - 77920087 77920094 1.0E-05 AACAAAGG 8 V_UF1H3BETA_Q6_M01068 TRANSFAC + 77925318 77925331 6.0E-06 GGCGGGGGAGGAGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 77926412 77926425 2.0E-06 GCTGGGGGAGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 77926549 77926562 0.0E+00 GTTGGGGGTGGGGA 14 V_CP2_01_M00072 TRANSFAC + 77925905 77925915 1.0E-06 GCTCTACCCAG 11 V_HOXD10_01_M01375 TRANSFAC - 77926286 77926302 3.0E-06 ATTCTAATAAAACTGGC 17 V_MTF1_05_M02778 TRANSFAC - 77925501 77925516 7.0E-06 CGGCCGTGTGCAGAGC 16 V_BHLHB2_04_M02845 TRANSFAC + 77925663 77925685 2.0E-06 TGTGTTTACACGTGTTAACTGGG 23 V_PAX4_04_M00380 TRANSFAC + 77919988 77920017 5.0E-06 AAATAATGAAACACAGGCTCCCTCCACCTC 30 V_SMAD1_01_M01590 TRANSFAC + 77923358 77923369 7.0E-06 AAGGACAAAGGG 12 V_SOX9_Q4_M01284 TRANSFAC - 77920085 77920095 0.0E+00 AAACAAAGGAC 11 V_OCT4_01_M01125 TRANSFAC - 77926363 77926377 4.0E-06 TATTCATGTGCTAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.