Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C2orf54 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79919 chromosome 2 open reading frame 54 chr2 - 241830952 - 241840573 241831452 Transcription Factor Binding Sites   Download all TFBS in the C2orf54 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SPIC_ETS_full_monomeric_14_1 SELEX - 241833035 241833048 9.0E-06 TTAAAGGGGAAGTG 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 241833013 241833024 3.0E-06 TGACAGGGGTCA 12 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 241836348 241836358 1.0E-05 GCCCCGCCCCC 11 SOX21_HMG_DBD_dimeric_13_2 SELEX - 241832845 241832857 1.0E-05 TGAATGGCAGGCA 13 ESR2_MA0258.1 JASPAR - 241833003 241833020 9.0E-06 AGGGGTCAGGCTGCCCCC 18 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 241833013 241833024 3.0E-06 TGACAGGGGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 241833013 241833024 6.0E-06 TGACAGGGGTCA 12 SPIB_ETS_DBD_monomeric_14_1 SELEX - 241833035 241833048 2.0E-06 TTAAAGGGGAAGTG 14 RUNX3_RUNX_full_monomeric_10_1 SELEX + 241837928 241837937 4.0E-06 CAACCGCAAA 10 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 241833013 241833024 5.0E-06 TGACAGGGGTCA 12 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX + 241832978 241832994 7.0E-06 GGCTGGTCTCACCGGTT 17 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 241836467 241836480 1.0E-06 GCAAACAGTGAACA 14 ESR1_MA0112.2 JASPAR + 241832999 241833018 5.0E-06 GGGTGGGGGCAGCCTGACCC 20 SP1_MA0079.2 JASPAR + 241836349 241836358 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 241836345 241836361 3.0E-06 CCAGCCCCGCCCCCCTC 17 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 241833013 241833024 7.0E-06 TGACAGGGGTCA 12 SPDEF_ETS_full_monomeric_11_1 SELEX + 241838010 241838020 6.0E-06 TCCCGGATGTG 11 SPI1_ETS_full_monomeric_14_1 SELEX - 241833035 241833048 2.0E-06 TTAAAGGGGAAGTG 14 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 241833013 241833024 4.0E-06 TGACAGGGGTCA 12 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 241836467 241836480 2.0E-06 GCAAACAGTGAACA 14 V_KLF15_Q2_M01714 TRANSFAC - 241836356 241836369 7.0E-06 GAGCAGGGGAGGGG 14 V_SPI1_01_M01203 TRANSFAC - 241833032 241833048 0.0E+00 TTAAAGGGGAAGTGGCA 17 V_ESR1_01_M02261 TRANSFAC + 241832999 241833018 5.0E-06 GGGTGGGGGCAGCCTGACCC 20 V_SP1_Q6_01_M00931 TRANSFAC - 241836348 241836357 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC - 241835590 241835611 7.0E-06 TCAAAGGCCTTAAATAGTTCAG 22 V_EGR_Q6_M00807 TRANSFAC + 241833001 241833011 6.0E-06 GTGGGGGCAGC 11 V_EGR_Q6_M00807 TRANSFAC + 241833115 241833125 1.0E-05 GTGGGCGCGGC 11 V_NKX25_Q6_M02108 TRANSFAC - 241835607 241835617 8.0E-06 CCCACTTCAAA 11 V_SP1_03_M02281 TRANSFAC + 241836349 241836358 7.0E-06 CCCCGCCCCC 10 V_PU1_Q4_M01172 TRANSFAC + 241833029 241833047 3.0E-06 GGCTGCCACTTCCCCTTTA 19 V_ZNF219_01_M01122 TRANSFAC + 241836352 241836363 0.0E+00 CGCCCCCCTCCC 12 V_GC_01_M00255 TRANSFAC - 241836346 241836359 2.0E-06 GGGGGGCGGGGCTG 14 V_SPI1_03_M02078 TRANSFAC - 241833035 241833044 1.0E-05 AGGGGAAGTG 10 V_SPDEF_03_M02811 TRANSFAC - 241838006 241838021 7.0E-06 GCACATCCGGGACTTC 16 V_SP4_03_M02810 TRANSFAC + 241836347 241836363 6.0E-06 AGCCCCGCCCCCCTCCC 17 V_KROX_Q6_M00982 TRANSFAC + 241836350 241836363 1.0E-05 CCCGCCCCCCTCCC 14 V_AP1_Q6_01_M00925 TRANSFAC + 241833200 241833208 7.0E-06 ATGACTCAG 9 V_SP1_Q6_M00196 TRANSFAC - 241836347 241836359 0.0E+00 GGGGGGCGGGGCT 13 V_TTF1_Q6_M00794 TRANSFAC - 241832834 241832845 3.0E-06 ACCTCAAGTGCT 12 V_SZF11_01_M01109 TRANSFAC - 241838509 241838523 6.0E-06 ACACGGTAACAGACT 15 V_AP1_C_M00199 TRANSFAC + 241833200 241833208 6.0E-06 ATGACTCAG 9 V_SP4_Q5_M01273 TRANSFAC + 241836348 241836358 1.0E-06 GCCCCGCCCCC 11 V_AP1_Q4_01_M00926 TRANSFAC - 241833200 241833207 1.0E-05 TGAGTCAT 8 V_MYOD_Q6_01_M00929 TRANSFAC - 241836319 241836336 8.0E-06 CTGGTGCAGGTGCTGGAG 18 V_CNOT3_01_M01253 TRANSFAC - 241833117 241833126 8.0E-06 GGCCGCGCCC 10 V_PDEF_01_M02040 TRANSFAC + 241838011 241838020 1.0E-05 CCCGGATGTG 10 V_DELTAEF1_01_M00073 TRANSFAC - 241833045 241833055 1.0E-06 ACTCACCTTAA 11 V_MEIS1_01_M00419 TRANSFAC + 241838184 241838195 9.0E-06 AAATGACAGAAG 12 V_FRA1_Q5_M01267 TRANSFAC - 241833200 241833207 1.0E-05 TGAGTCAT 8 V_TCF4_Q5_M00671 TRANSFAC + 241835605 241835612 1.0E-05 CCTTTGAA 8 V_ZIC3_04_M02837 TRANSFAC + 241836546 241836560 6.0E-06 ACCCCCCGGGGAGCT 15 V_ZIC1_04_M02835 TRANSFAC - 241836545 241836558 5.0E-06 CTCCCCGGGGGGTG 14 V_EKLF_Q5_M01874 TRANSFAC - 241832997 241833006 9.0E-06 CCCCACCCTG 10 V_SP1_Q2_01_M00933 TRANSFAC + 241836349 241836358 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC - 241836347 241836359 1.0E-06 GGGGGGCGGGGCT 13 V_ZIC2_04_M02836 TRANSFAC + 241836546 241836560 3.0E-06 ACCCCCCGGGGAGCT 15 V_ESR2_01_M02377 TRANSFAC - 241833003 241833020 9.0E-06 AGGGGTCAGGCTGCCCCC 18 V_TCF11_01_M00285 TRANSFAC - 241838178 241838190 8.0E-06 GTCATTTTACCTC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.