Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF408 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79797 zinc finger protein 408 chr11 + 46717316 - 46723143 46722643 Transcription Factor Binding Sites   Download all TFBS in the ZNF408 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX + 46722260 46722271 5.0E-06 GCCCCGCCCACT 12 GABPA_MA0062.2 JASPAR - 46722226 46722236 3.0E-06 CCGGAAGTGGG 11 GABPA_MA0062.2 JASPAR - 46722563 46722573 4.0E-06 CCGGAAGTGAG 11 POU3F3_POU_DBD_monomeric_12_1 SELEX + 46721710 46721721 6.0E-06 AAAAATAAATAA 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 46721707 46721718 7.0E-06 TAAAAAAATAAA 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 46721711 46721722 5.0E-06 AAAATAAATAAG 12 SRF_MADS_DBD_dimeric_12_1 SELEX - 46718954 46718965 9.0E-06 ACCATATATGTC 12 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 46722259 46722272 5.0E-06 AGCCCCGCCCACTT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 46721709 46721721 1.0E-06 AAAAAATAAATAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 46721711 46721721 3.0E-06 AAAATAAATAA 11 EWSR1-FLI1_MA0149.1 JASPAR + 46721872 46721889 4.0E-06 GGAAGGCAGGAAGAAGGT 18 EBF1_MA0154.1 JASPAR + 46718900 46718909 5.0E-06 ACCCCAGGGA 10 Pax4_MA0068.1 JASPAR + 46719227 46719256 9.0E-06 GAAAACAGCCCAAAAAAACCCTCTTCTTCC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX - 46722361 46722374 1.0E-06 GGAAAGCGGAACTA 14 RFX2_RFX_DBD_dimeric_15_1 SELEX - 46719136 46719150 6.0E-06 TGTTGCTAGGCACAG 15 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 46721710 46721720 2.0E-06 AAAAATAAATA 11 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 46721709 46721722 8.0E-06 AAAAAATAAATAAG 14 FOXI1_MA0042.1 JASPAR - 46721712 46721723 2.0E-06 ACTTATTTATTT 12 RFX3_RFX_DBD_dimeric_15_1 SELEX - 46719136 46719150 8.0E-06 TGTTGCTAGGCACAG 15 SP4_C2H2_full_monomeric_17_1 SELEX + 46720373 46720389 1.0E-05 CTGGCCCCTCCCACTAC 17 SP4_C2H2_full_monomeric_17_1 SELEX + 46722257 46722273 2.0E-06 GGAGCCCCGCCCACTTC 17 NFATC1_NFAT_full_dimeric_20_1 SELEX - 46722351 46722370 1.0E-06 AGCGGAACTAATTGTTCCAG 20 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 46722352 46722368 8.0E-06 TGGAACAATTAGTTCCG 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 46722352 46722368 9.0E-06 CGGAACTAATTGTTCCA 17 SP1_C2H2_DBD_monomeric_11_1 SELEX + 46722260 46722270 1.0E-05 GCCCCGCCCAC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 46721710 46721720 1.0E-06 AAAAATAAATA 11 Gata1_MA0035.2 JASPAR + 46718981 46718991 2.0E-06 GCAGATAAGGA 11 MZF1_5-13_MA0057.1 JASPAR - 46721816 46721825 4.0E-06 GGAGGGGGAA 10 Foxd3_MA0041.1 JASPAR - 46721708 46721719 2.0E-06 ATTTATTTTTTT 12 MYBL1_MYB_DBD_dimeric_12_1 SELEX - 46720400 46720411 1.0E-05 GAAGTTAAACTG 12 POU3F1_POU_DBD_monomeric_12_2 SELEX + 46721710 46721721 8.0E-06 AAAAATAAATAA 12 SRF_MADS_full_dimeric_16_1 SELEX - 46718952 46718967 5.0E-06 TGACCATATATGTCAG 16 HNF4A_MA0114.1 JASPAR - 46721857 46721869 8.0E-06 AGGGCAGAGTCCA 13 GABPA_ETS_full_monomeric_10_1 SELEX - 46722228 46722237 9.0E-06 GCCGGAAGTG 10 GABPA_ETS_full_monomeric_10_1 SELEX - 46722565 46722574 9.0E-06 GCCGGAAGTG 10 SPDEF_ETS_full_monomeric_11_1 SELEX - 46722147 46722157 9.0E-06 AGCCGGATGTT 11 SPI1_ETS_full_monomeric_14_1 SELEX - 46722361 46722374 1.0E-06 GGAAAGCGGAACTA 14 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 46717912 46717929 9.0E-06 GTGCCATCCTCTGCCCCA 18 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 46718034 46718049 8.0E-06 GAGGGCAGAGGTCCAC 16 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 46721708 46721720 0.0E+00 AAAAAAATAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 46721708 46721720 4.0E-06 AAAAAAATAAATA 13 E2F2_E2F_DBD_dimeric_18_1 SELEX + 46721913 46721930 9.0E-06 ATTGCAGGCGCCAAAATG 18 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 46721711 46721721 7.0E-06 AAAATAAATAA 11 E2F3_E2F_DBD_dimeric_18_3 SELEX + 46721913 46721930 9.0E-06 ATTGCAGGCGCCAAAATG 18 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 46721709 46721722 2.0E-06 AAAAAATAAATAAG 14 IRF2_MA0051.1 JASPAR - 46722357 46722374 3.0E-06 GGAAAGCGGAACTAATTG 18 Zfx_MA0146.1 JASPAR + 46722958 46722971 2.0E-06 CGCGCCTGGGCCTG 14 V_HNF3B_01_M00131 TRANSFAC - 46721707 46721721 1.0E-06 TTATTTATTTTTTTA 15 V_HNF3B_01_M00131 TRANSFAC - 46721711 46721725 4.0E-06 CAACTTATTTATTTT 15 V_SPI1_01_M01203 TRANSFAC - 46722358 46722374 3.0E-06 GGAAAGCGGAACTAATT 17 V_TST1_02_M01316 TRANSFAC + 46721708 46721724 9.0E-06 AAAAAAATAAATAAGTT 17 V_DBX1_01_M01483 TRANSFAC + 46721708 46721724 4.0E-06 AAAAAAATAAATAAGTT 17 V_FREAC7_01_M00293 TRANSFAC + 46721709 46721724 0.0E+00 AAAAAATAAATAAGTT 16 V_FLI1_Q6_M01208 TRANSFAC - 46722563 46722573 3.0E-06 CCGGAAGTGAG 11 V_XFD1_01_M00267 TRANSFAC + 46721711 46721724 3.0E-06 AAAATAAATAAGTT 14 V_FOXA2_04_M02749 TRANSFAC + 46721709 46721725 3.0E-06 AAAAAATAAATAAGTTG 17 V_SREBP2_Q6_M01177 TRANSFAC + 46719069 46719080 2.0E-06 AGGCCACTTGAC 12 V_PAX4_03_M00378 TRANSFAC + 46722063 46722074 7.0E-06 CATCCCCACCCG 12 V_NF1A_Q6_M02103 TRANSFAC + 46717887 46717902 7.0E-06 CAGGCGTGTTGCCAGA 16 V_HMGIY_Q3_M01010 TRANSFAC - 46721706 46721720 1.0E-06 TATTTATTTTTTTAA 15 V_FOXD3_01_M00130 TRANSFAC - 46721708 46721719 1.0E-06 ATTTATTTTTTT 12 V_FOXD3_01_M00130 TRANSFAC - 46721712 46721723 8.0E-06 ACTTATTTATTT 12 V_BCL6_01_M01183 TRANSFAC - 46721710 46721725 9.0E-06 CAACTTATTTATTTTT 16 V_SPIB_02_M02041 TRANSFAC - 46722361 46722370 7.0E-06 AGCGGAACTA 10 V_AR_Q6_01_M01996 TRANSFAC - 46722352 46722366 7.0E-06 GAACTAATTGTTCCA 15 V_GABP_B_M00341 TRANSFAC - 46722226 46722237 4.0E-06 GCCGGAAGTGGG 12 V_FOXO3A_Q1_M01137 TRANSFAC + 46721709 46721720 4.0E-06 AAAAAATAAATA 12 V_FOXO3A_Q1_M01137 TRANSFAC + 46721713 46721724 2.0E-06 AATAAATAAGTT 12 V_PLAG1_02_M01973 TRANSFAC - 46721918 46721933 9.0E-06 CCCCATTTTGGCGCCT 16 V_P53_DECAMER_Q2_M00761 TRANSFAC + 46718996 46719005 4.0E-06 AGACAAGCCC 10 V_HNF3_Q6_01_M01012 TRANSFAC - 46721704 46721721 3.0E-06 TTATTTATTTTTTTAAGA 18 V_HNF3_Q6_01_M01012 TRANSFAC - 46721708 46721725 1.0E-06 CAACTTATTTATTTTTTT 18 V_MAF_Q6_M00648 TRANSFAC - 46721758 46721773 4.0E-06 TTGGGGGAAGTGTTCC 16 V_GABPA_04_M02858 TRANSFAC - 46722622 46722637 0.0E+00 CCTTCTTCCCCTCCAA 16 V_HNF4A_03_M02220 TRANSFAC - 46721857 46721869 8.0E-06 AGGGCAGAGTCCA 13 V_DLX2_01_M01468 TRANSFAC - 46722351 46722366 1.0E-05 GAACTAATTGTTCCAG 16 V_DLX2_01_M01468 TRANSFAC + 46722353 46722368 7.0E-06 GGAACAATTAGTTCCG 16 V_NERF_Q2_M00531 TRANSFAC - 46722222 46722239 9.0E-06 GGGCCGGAAGTGGGTTGG 18 V_NERF_Q2_M00531 TRANSFAC - 46722262 46722279 2.0E-06 GTGCAGGAAGTGGGCGGG 18 V_NKX24_01_M01350 TRANSFAC + 46719068 46719083 4.0E-06 GAGGCCACTTGACAAC 16 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 46718999 46719014 3.0E-06 CAAGCCCTGGGGGTGG 16 V_PU1_Q4_M01172 TRANSFAC + 46719244 46719262 7.0E-06 ACCCTCTTCTTCCTCTCCC 19 V_PU1_Q4_M01172 TRANSFAC + 46722355 46722373 3.0E-06 AACAATTAGTTCCGCTTTC 19 V_TCFAP2E_04_M02926 TRANSFAC + 46721703 46721716 1.0E-06 GTCTTAAAAAAATA 14 V_NKX62_Q2_M00489 TRANSFAC + 46721711 46721722 4.0E-06 AAAATAAATAAG 12 V_SPIC_01_M02042 TRANSFAC - 46722361 46722370 7.0E-06 AGCGGAACTA 10 V_ELF4_04_M02850 TRANSFAC + 46721703 46721719 4.0E-06 GTCTTAAAAAAATAAAT 17 V_ELF4_04_M02850 TRANSFAC + 46721704 46721720 1.0E-06 TCTTAAAAAAATAAATA 17 V_ELF4_04_M02850 TRANSFAC + 46721705 46721721 0.0E+00 CTTAAAAAAATAAATAA 17 V_SOX13_03_M02797 TRANSFAC + 46722350 46722365 1.0E-06 GCTGGAACAATTAGTT 16 V_ZFP105_03_M02827 TRANSFAC + 46721706 46721720 6.0E-06 TTAAAAAAATAAATA 15 V_ZFP105_03_M02827 TRANSFAC + 46721707 46721721 7.0E-06 TAAAAAAATAAATAA 15 V_SOX7_04_M02911 TRANSFAC - 46722345 46722366 9.0E-06 GAACTAATTGTTCCAGCCATCT 22 V_POLY_C_M00212 TRANSFAC + 46719237 46719254 3.0E-06 CAAAAAAACCCTCTTCTT 18 V_SP4_03_M02810 TRANSFAC + 46722171 46722187 3.0E-06 GGAACCGCCCCCTCCCG 17 V_ER81_02_M02065 TRANSFAC - 46722565 46722574 1.0E-05 GCCGGAAGTG 10 V_SP1_Q6_M00196 TRANSFAC - 46722259 46722271 2.0E-06 AGTGGGCGGGGCT 13 V_HNF3_Q6_M00791 TRANSFAC + 46721706 46721718 8.0E-06 TTAAAAAAATAAA 13 V_HNF3_Q6_M00791 TRANSFAC + 46721710 46721722 3.0E-06 AAAAATAAATAAG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 46721710 46721720 1.0E-06 TATTTATTTTT 11 V_HNF1_Q6_01_M01011 TRANSFAC + 46721706 46721726 7.0E-06 TTAAAAAAATAAATAAGTTGA 21 V_GADP_01_M01258 TRANSFAC + 46722565 46722576 1.0E-06 CACTTCCGGCGT 12 V_SP1SP3_Q4_M01219 TRANSFAC + 46722175 46722185 1.0E-06 CCGCCCCCTCC 11 V_SP1SP3_Q4_M01219 TRANSFAC - 46722600 46722610 5.0E-06 CCGCCTCCTCC 11 V_SPIB_01_M01204 TRANSFAC - 46722358 46722374 1.0E-06 GGAAAGCGGAACTAATT 17 V_TEL2_Q6_M00678 TRANSFAC + 46722267 46722276 6.0E-06 CCACTTCCTG 10 V_TEL2_Q6_M00678 TRANSFAC + 46722564 46722573 9.0E-06 TCACTTCCGG 10 V_ERBETA_Q5_M01875 TRANSFAC + 46720367 46720381 7.0E-06 GTCAGACTGGCCCCT 15 V_GATA1_09_M02254 TRANSFAC + 46718981 46718991 2.0E-06 GCAGATAAGGA 11 V_ELK1_02_M00025 TRANSFAC - 46722564 46722577 9.0E-06 TACGCCGGAAGTGA 14 V_XFD2_01_M00268 TRANSFAC + 46721711 46721724 6.0E-06 AAAATAAATAAGTT 14 V_EBF1_01_M02267 TRANSFAC + 46718900 46718909 5.0E-06 ACCCCAGGGA 10 V_NCX_02_M01420 TRANSFAC + 46721708 46721724 3.0E-06 AAAAAAATAAATAAGTT 17 V_TBP_06_M02814 TRANSFAC + 46721705 46721720 7.0E-06 CTTAAAAAAATAAATA 16 V_TBP_06_M02814 TRANSFAC - 46721707 46721722 1.0E-05 CTTATTTATTTTTTTA 16 V_MZF1_02_M00084 TRANSFAC - 46721816 46721828 1.0E-05 GCGGGAGGGGGAA 13 V_MZF1_02_M00084 TRANSFAC - 46722058 46722070 5.0E-06 TGGGGATGGGGAA 13 V_ICSBP_Q6_M00699 TRANSFAC + 46721725 46721736 6.0E-06 GAACTGAAAGCG 12 V_ELK1_01_M00007 TRANSFAC + 46722552 46722567 7.0E-06 AGAAGAGGAAGCTCAC 16 V_ELK1_01_M00007 TRANSFAC - 46722562 46722577 7.0E-06 TACGCCGGAAGTGAGC 16 V_CETS1P54_03_M01078 TRANSFAC - 46722225 46722240 8.0E-06 GGGGCCGGAAGTGGGT 16 V_SP4_Q5_M01273 TRANSFAC + 46722260 46722270 9.0E-06 GCCCCGCCCAC 11 V_PTF1BETA_Q6_M00657 TRANSFAC - 46720277 46720290 8.0E-06 GAAGAACTGACAGC 14 V_ELF1_Q6_M00746 TRANSFAC + 46722552 46722563 7.0E-06 AGAAGAGGAAGC 12 V_GCNF_01_M00526 TRANSFAC - 46720233 46720250 0.0E+00 GTGAAGTTCAAGTTCAGC 18 V_MTF1_06_M02882 TRANSFAC + 46721709 46721722 3.0E-06 AAAAAATAAATAAG 14 V_TAL1_01_M01591 TRANSFAC - 46718981 46718993 3.0E-06 TCTCCTTATCTGC 13 V_GATA1_04_M00128 TRANSFAC + 46718980 46718992 4.0E-06 GGCAGATAAGGAG 13 V_FOXL1_04_M02753 TRANSFAC + 46721709 46721725 2.0E-06 AAAAAATAAATAAGTTG 17 V_HNF4_Q6_01_M01031 TRANSFAC - 46721856 46721869 6.0E-06 AGGGCAGAGTCCAG 14 V_ZBTB4_04_M02929 TRANSFAC - 46720252 46720267 3.0E-06 CAGTCACTGGAAAAGA 16 V_TCF7_04_M02921 TRANSFAC + 46721701 46721715 6.0E-06 CCGTCTTAAAAAAAT 15 V_SMAD3_03_M02794 TRANSFAC + 46720285 46720301 4.0E-06 TTCTTCCAGACATGACC 17 V_SRF_01_M00152 TRANSFAC - 46718951 46718968 2.0E-06 CTGACCATATATGTCAGT 18 V_LMO2COM_02_M00278 TRANSFAC + 46718982 46718990 3.0E-06 CAGATAAGG 9 V_T3RBETA_Q6_01_M02119 TRANSFAC + 46718978 46718994 5.0E-06 AGGGCAGATAAGGAGAG 17 V_SRF_Q4_M00810 TRANSFAC + 46718954 46718971 5.0E-06 GACATATATGGTCAGAGA 18 V_OCT1_06_M00162 TRANSFAC + 46718948 46718961 7.0E-06 AAAACTGACATATA 14 V_SRF_06_M02916 TRANSFAC + 46721703 46721719 6.0E-06 GTCTTAAAAAAATAAAT 17 V_SRF_06_M02916 TRANSFAC + 46721704 46721720 1.0E-06 TCTTAAAAAAATAAATA 17 V_SRF_06_M02916 TRANSFAC + 46721705 46721721 0.0E+00 CTTAAAAAAATAAATAA 17 V_HFH3_01_M00289 TRANSFAC - 46721711 46721723 2.0E-06 ACTTATTTATTTT 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 46721872 46721889 4.0E-06 GGAAGGCAGGAAGAAGGT 18 V_FOXJ2_01_M00422 TRANSFAC + 46721708 46721725 2.0E-06 AAAAAAATAAATAAGTTG 18 V_HNF3B_Q6_M02014 TRANSFAC - 46721713 46721721 1.0E-05 TTATTTATT 9 V_GATA5_03_M02756 TRANSFAC + 46718978 46718994 9.0E-06 AGGGCAGATAAGGAGAG 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 46722059 46722072 7.0E-06 GGTGGGGATGGGGA 14 V_SP1_Q4_01_M00932 TRANSFAC - 46720375 46720387 3.0E-06 AGTGGGAGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 46722259 46722271 1.0E-06 AGTGGGCGGGGCT 13 V_AR_01_M00481 TRANSFAC + 46722353 46722367 1.0E-05 GGAACAATTAGTTCC 15 V_FOXK1_03_M02752 TRANSFAC + 46721709 46721725 8.0E-06 AAAAAATAAATAAGTTG 17 V_GBX1_01_M01371 TRANSFAC - 46722352 46722368 7.0E-06 CGGAACTAATTGTTCCA 17 V_SPI1_02_M02043 TRANSFAC - 46722361 46722370 1.0E-05 AGCGGAACTA 10 V_NKX21_01_M01312 TRANSFAC + 46719068 46719083 7.0E-06 GAGGCCACTTGACAAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.