Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TCTN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79600 tectonic family member 1 chr12 + 111046831 - 111052411 111051911 Transcription Factor Binding Sites   Download all TFBS in the TCTN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 111047144 111047154 8.0E-06 GGTGACTCATG 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 111047144 111047154 6.0E-06 CATGAGTCACC 11 LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 111053613 111053625 5.0E-06 CTCAAATTGATTA 13 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 111053347 111053364 6.0E-06 GTGATTATATCTCACTTA 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 111053348 111053364 2.0E-06 TGATTATATCTCACTTA 17 EVX1_homeodomain_DBD_monomeric_10_1 SELEX + 111053026 111053035 7.0E-06 AGTAATTACC 10 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 111052931 111052942 0.0E+00 ACTAAAAATAGA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 111051675 111051687 7.0E-06 TCTGCATTTTTTA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX + 111051677 111051687 9.0E-06 TGCATTTTTTA 11 SRY_HMG_DBD_dimeric_16_1 SELEX + 111051670 111051685 7.0E-06 GAAAATCTGCATTTTT 16 SOX8_HMG_full_dimeric_17_1 SELEX - 111048721 111048737 1.0E-06 CATAAATGTTTGTGATT 17 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 111052931 111052942 0.0E+00 ACTAAAAATAGA 12 KLF13_C2H2_full_monomeric_18_1 SELEX + 111051726 111051743 6.0E-06 TTTACACGCCCCTCGTTT 18 PAX1_PAX_DBD_monomeric_17_1 SELEX + 111053086 111053102 8.0E-06 TGACATGGATGACTTCA 17 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 111048724 111048737 4.0E-06 CACAAACATTTATG 14 MEF2B_MADS_full_dimeric_12_1 SELEX + 111052931 111052942 0.0E+00 ACTAAAAATAGA 12 RFX2_RFX_DBD_dimeric_15_1 SELEX + 111051933 111051947 6.0E-06 GGTTGCCGGGCAACG 15 RFX2_RFX_DBD_dimeric_15_1 SELEX - 111051933 111051947 5.0E-06 CGTTGCCCGGCAACC 15 POU3F3_POU_DBD_monomeric_13_1 SELEX - 111051672 111051684 7.0E-06 AAAATGCAGATTT 13 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 111047190 111047206 9.0E-06 TGGATCACTAGAGGTCA 17 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX + 111053026 111053035 6.0E-06 AGTAATTACC 10 PAX3_PAX_DBD_dimeric_10_1 SELEX + 111053616 111053625 2.0E-06 AAATTGATTA 10 PAX3_PAX_DBD_dimeric_10_1 SELEX - 111053616 111053625 3.0E-06 TAATCAATTT 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 111053142 111053155 6.0E-06 AAGGCATATTCACA 14 NFIX_NFI_full_monomeric_9_2 SELEX + 111048684 111048692 8.0E-06 AATGCCAAT 9 RFX3_RFX_DBD_dimeric_15_1 SELEX + 111051933 111051947 6.0E-06 GGTTGCCGGGCAACG 15 RFX3_RFX_DBD_dimeric_15_1 SELEX - 111051933 111051947 5.0E-06 CGTTGCCCGGCAACC 15 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 111047190 111047206 1.0E-05 TGGATCACTAGAGGTCA 17 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 111051903 111051918 7.0E-06 TTCCCGTGATGCCCCG 16 RFX4_RFX_DBD_dimeric_15_1 SELEX + 111051933 111051947 0.0E+00 GGTTGCCGGGCAACG 15 RFX4_RFX_DBD_dimeric_15_1 SELEX - 111051933 111051947 0.0E+00 CGTTGCCCGGCAACC 15 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 111053347 111053364 9.0E-06 GTGATTATATCTCACTTA 18 PAX9_PAX_DBD_monomeric_17_1 SELEX + 111053086 111053102 9.0E-06 TGACATGGATGACTTCA 17 Hltf_MA0109.1 JASPAR + 111048727 111048736 1.0E-05 AAACATTTAT 10 JDP2_bZIP_full_dimeric_9_1 SELEX - 111047145 111047153 1.0E-05 ATGAGTCAC 9 MEOX1_homeodomain_full_monomeric_10_1 SELEX + 111053026 111053035 4.0E-06 AGTAATTACC 10 FOXC1_MA0032.1 JASPAR + 111053638 111053645 7.0E-06 AGTAAGTA 8 FOXO3_forkhead_full_dimeric_14_1 SELEX - 111047227 111047240 7.0E-06 TTCACCATGTTGAC 14 RUNX1_MA0002.2 JASPAR - 111051711 111051721 2.0E-06 GGCTGTGGTTT 11 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 111047200 111047214 3.0E-06 GAGGTCAGGAGTTTA 15 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 111053347 111053364 9.0E-06 GTGATTATATCTCACTTA 18 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 111047200 111047215 7.0E-06 GAGGTCAGGAGTTTAG 16 PAX7_PAX_full_dimeric_10_1 SELEX + 111053616 111053625 2.0E-06 AAATTGATTA 10 PAX7_PAX_full_dimeric_10_1 SELEX - 111053616 111053625 2.0E-06 TAATCAATTT 10 V_RUSH1A_02_M01107 TRANSFAC + 111048727 111048736 1.0E-05 AAACATTTAT 10 V_MTF1_01_M01242 TRANSFAC + 111053129 111053148 6.0E-06 GAGTGCAAAACTTTGTGAAT 20 V_FOXP1_01_M00987 TRANSFAC - 111048713 111048732 2.0E-06 ATGTTTGTGATTTCAAATAT 20 V_AML_Q6_M00769 TRANSFAC - 111051709 111051723 2.0E-06 CCGGCTGTGGTTTCC 15 V_POU3F3_01_M03090 TRANSFAC + 111051671 111051687 2.0E-06 AAAATCTGCATTTTTTA 17 V_HSF1_Q6_M01023 TRANSFAC + 111051870 111051886 8.0E-06 TCTCCGGCAGCTTCTCG 17 V_HSF1_Q6_M01023 TRANSFAC + 111051880 111051896 3.0E-06 CTTCTCGCGGCTTCGCA 17 V_BACH2_01_M00490 TRANSFAC - 111047144 111047154 2.0E-06 CATGAGTCACC 11 V_MAFK_03_M02776 TRANSFAC - 111051672 111051686 1.0E-06 AAAAAATGCAGATTT 15 V_NRSF_Q4_M01028 TRANSFAC + 111052009 111052027 6.0E-06 CCGCTCCTGGTGGTGCTCC 19 V_DLX3_01_M01400 TRANSFAC + 111053022 111053038 6.0E-06 TTGCAGTAATTACCACT 17 V_HMGIY_Q3_M01010 TRANSFAC - 111053072 111053086 4.0E-06 AATTTTTTTTTTTGA 15 V_HMGIY_Q3_M01010 TRANSFAC - 111053077 111053091 0.0E+00 ATGTCAATTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 111052930 111052944 9.0E-06 TACTAAAAATAGAAA 15 V_FOXD3_01_M00130 TRANSFAC - 111053075 111053086 9.0E-06 AATTTTTTTTTT 12 V_MEF2_02_M00231 TRANSFAC + 111052925 111052946 0.0E+00 GTCTCTACTAAAAATAGAAAAA 22 V_OCTAMER_01_M01324 TRANSFAC + 111051671 111051687 2.0E-06 AAAATCTGCATTTTTTA 17 V_AP2_Q6_01_M00915 TRANSFAC + 111052178 111052190 2.0E-06 CCGGCCCCAGGCC 13 V_HOXA2_01_M01402 TRANSFAC - 111053022 111053037 6.0E-06 GTGGTAATTACTGCAA 16 V_HOXA2_01_M01402 TRANSFAC + 111053024 111053039 6.0E-06 GCAGTAATTACCACTG 16 V_TR4_Q2_M01725 TRANSFAC - 111047198 111047208 5.0E-06 CCTGACCTCTA 11 V_PITX2_Q6_M02114 TRANSFAC + 111047157 111047166 1.0E-06 TGTAATCCCA 10 V_VAX2_01_M01327 TRANSFAC + 111053022 111053037 3.0E-06 TTGCAGTAATTACCAC 16 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 111051797 111051812 2.0E-06 CGGCGCCTGGGTGAGG 16 V_EVX1_01_M01475 TRANSFAC - 111053022 111053038 4.0E-06 AGTGGTAATTACTGCAA 17 V_TCFAP2E_04_M02926 TRANSFAC + 111053069 111053082 2.0E-06 GTCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 111053071 111053084 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 111053073 111053086 8.0E-06 CAAAAAAAAAAATT 14 V_DLX5_01_M01388 TRANSFAC - 111053022 111053037 8.0E-06 GTGGTAATTACTGCAA 16 V_DLX5_01_M01388 TRANSFAC + 111053024 111053039 6.0E-06 GCAGTAATTACCACTG 16 V_MEF2A_Q6_M02024 TRANSFAC - 111052931 111052940 4.0E-06 TATTTTTAGT 10 V_RPC155_01_M01798 TRANSFAC + 111052884 111052899 6.0E-06 GTAGGAGTTCAAGATC 16 V_HNF6_Q6_M00639 TRANSFAC - 111053616 111053627 9.0E-06 CTTAATCAATTT 12 V_PITX1_Q6_M01826 TRANSFAC + 111048687 111048697 5.0E-06 GCCAATAATCC 11 V_ELF4_04_M02850 TRANSFAC + 111053069 111053085 1.0E-06 GTCTCAAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 111053070 111053086 0.0E+00 TCTCAAAAAAAAAAATT 17 V_ELF4_04_M02850 TRANSFAC + 111053071 111053087 8.0E-06 CTCAAAAAAAAAAATTG 17 V_ELF4_04_M02850 TRANSFAC + 111053072 111053088 4.0E-06 TCAAAAAAAAAAATTGA 17 V_TAL1_Q6_M00993 TRANSFAC - 111048704 111048713 3.0E-06 TCCATCTGTT 10 V_BACH1_01_M00495 TRANSFAC - 111047142 111047156 4.0E-06 GGCATGAGTCACCAT 15 V_HOXA6_01_M01392 TRANSFAC - 111053022 111053037 8.0E-06 GTGGTAATTACTGCAA 16 V_HOXA6_01_M01392 TRANSFAC + 111053024 111053039 2.0E-06 GCAGTAATTACCACTG 16 V_POU3F2_01_M00463 TRANSFAC + 111051676 111051689 8.0E-06 CTGCATTTTTTAAG 14 V_OCT1_02_M00136 TRANSFAC - 111053140 111053154 4.0E-06 AGGCATATTCACAAA 15 V_ZFP105_03_M02827 TRANSFAC + 111053071 111053085 2.0E-06 CTCAAAAAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC + 111053072 111053086 9.0E-06 TCAAAAAAAAAAATT 15 V_ZFP105_03_M02827 TRANSFAC + 111053073 111053087 2.0E-06 CAAAAAAAAAAATTG 15 V_ZFP105_03_M02827 TRANSFAC + 111053074 111053088 4.0E-06 AAAAAAAAAAATTGA 15 V_RUNX1_01_M02257 TRANSFAC - 111051711 111051721 2.0E-06 GGCTGTGGTTT 11 V_STAF_01_M00262 TRANSFAC + 111051901 111051922 2.0E-06 CCTTCCCGTGATGCCCCGCGCC 22 V_NKX31_02_M02782 TRANSFAC - 111053185 111053201 3.0E-06 ATGAACCACTTTAAGAA 17 V_HOXA3_02_M01337 TRANSFAC + 111053022 111053035 2.0E-06 TTGCAGTAATTACC 14 V_SP4_03_M02810 TRANSFAC + 111051830 111051846 7.0E-06 GGATCCGCCCCCTGCCT 17 V_RSRFC4_Q2_M00407 TRANSFAC + 111052929 111052945 0.0E+00 CTACTAAAAATAGAAAA 17 V_PXRRXR_02_M01153 TRANSFAC + 111053167 111053174 1.0E-05 AGAGTTCA 8 V_HOXA1_01_M01487 TRANSFAC + 111053022 111053037 7.0E-06 TTGCAGTAATTACCAC 16 V_HOXA1_01_M01487 TRANSFAC - 111053024 111053039 3.0E-06 CAGTGGTAATTACTGC 16 V_HOXB6_01_M01460 TRANSFAC + 111053022 111053037 7.0E-06 TTGCAGTAATTACCAC 16 V_HOXB6_01_M01460 TRANSFAC - 111053024 111053039 4.0E-06 CAGTGGTAATTACTGC 16 V_LXR_DR4_Q3_M00766 TRANSFAC - 111047191 111047206 6.0E-06 TGACCTCTAGTGATCC 16 V_NKX25_Q5_M01043 TRANSFAC - 111051331 111051340 6.0E-06 TCCCACTTCA 10 V_MEF2_03_M00232 TRANSFAC + 111047246 111047267 6.0E-06 GTCTGTACTAAAAATACAAAAA 22 V_MEF2_03_M00232 TRANSFAC + 111052925 111052946 0.0E+00 GTCTCTACTAAAAATAGAAAAA 22 V_JUNDM2_04_M02876 TRANSFAC - 111047142 111047157 3.0E-06 AGGCATGAGTCACCAT 16 V_YY1_Q6_02_M01035 TRANSFAC - 111052909 111052919 1.0E-06 TTCGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC - 111051667 111051689 1.0E-05 CTTAAAAAATGCAGATTTTCTGT 23 V_OCT1_04_M00138 TRANSFAC - 111053140 111053162 1.0E-05 TCAGGAAAAGGCATATTCACAAA 23 V_SP1SP3_Q4_M01219 TRANSFAC + 111051834 111051844 8.0E-06 CCGCCCCCTGC 11 V_MEF2_04_M00233 TRANSFAC + 111047246 111047267 1.0E-06 GTCTGTACTAAAAATACAAAAA 22 V_MEF2_04_M00233 TRANSFAC + 111052925 111052946 0.0E+00 GTCTCTACTAAAAATAGAAAAA 22 V_MUSCLE_INI_B_M00321 TRANSFAC + 111051791 111051811 6.0E-06 TCGCTGCCTCACCCAGGCGCC 21 V_NCX_02_M01420 TRANSFAC - 111053213 111053229 3.0E-06 GAAAATTTTAAAAACTT 17 V_STAF_02_M00264 TRANSFAC + 111051901 111051921 4.0E-06 CCTTCCCGTGATGCCCCGCGC 21 V_AP1_01_M00517 TRANSFAC - 111047143 111047155 3.0E-06 GCATGAGTCACCA 13 V_FOXM1_01_M00630 TRANSFAC + 111053124 111053132 4.0E-06 AGATTGAGT 9 V_NKX32_02_M01482 TRANSFAC - 111053185 111053201 4.0E-06 ATGAACCACTTTAAGAA 17 V_GCNF_01_M00526 TRANSFAC + 111052885 111052902 3.0E-06 TAGGAGTTCAAGATCAGT 18 V_HOXB7_01_M01396 TRANSFAC - 111053022 111053037 0.0E+00 GTGGTAATTACTGCAA 16 V_YY1_03_M02044 TRANSFAC - 111052908 111052919 1.0E-06 TTCGCCATTTTG 12 V_ZBTB3_03_M02825 TRANSFAC + 111053030 111053046 5.0E-06 ATTACCACTGCACTCCA 17 V_OCT1_Q6_M00195 TRANSFAC + 111048681 111048695 1.0E-05 GTGAATGCCAATAAT 15 V_HDX_01_M01333 TRANSFAC + 111048714 111048730 2.0E-06 TATTTGAAATCACAAAC 17 V_IPF1_01_M01233 TRANSFAC + 111053025 111053034 8.0E-06 CAGTAATTAC 10 V_PITX2_Q2_M00482 TRANSFAC + 111047157 111047167 1.0E-06 TGTAATCCCAG 11 V_RSRFC4_01_M00026 TRANSFAC - 111052929 111052944 0.0E+00 TTTCTATTTTTAGTAG 16 V_BBX_03_M02739 TRANSFAC - 111053096 111053110 6.0E-06 TCATTCAGTGAAGTC 15 V_HSF_Q6_M00641 TRANSFAC + 111051881 111051893 1.0E-06 TTCTCGCGGCTTC 13 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 111047197 111047211 7.0E-06 CTAGAGGTCAGGAGT 15 V_HB9_01_M01349 TRANSFAC - 111053022 111053037 2.0E-06 GTGGTAATTACTGCAA 16 V_SRF_06_M02916 TRANSFAC + 111053069 111053085 2.0E-06 GTCTCAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 111053070 111053086 0.0E+00 TCTCAAAAAAAAAAATT 17 V_SRF_06_M02916 TRANSFAC + 111053071 111053087 0.0E+00 CTCAAAAAAAAAAATTG 17 V_SRF_06_M02916 TRANSFAC + 111053072 111053088 4.0E-06 TCAAAAAAAAAAATTGA 17 V_NFE2_Q6_M02104 TRANSFAC - 111047139 111047154 2.0E-06 CATGAGTCACCATACC 16 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 111051711 111051718 1.0E-05 TGTGGTTT 8 V_EFC_Q6_M00626 TRANSFAC - 111051934 111051947 8.0E-06 CGTTGCCCGGCAAC 14 V_HOXB3_01_M01330 TRANSFAC - 111053022 111053038 6.0E-06 AGTGGTAATTACTGCAA 17 V_MOX1_01_M01443 TRANSFAC + 111053024 111053039 4.0E-06 GCAGTAATTACCACTG 16 V_HOXA7_03_M01394 TRANSFAC - 111053022 111053037 1.0E-06 GTGGTAATTACTGCAA 16 V_HOXD3_01_M01338 TRANSFAC + 111053022 111053037 6.0E-06 TTGCAGTAATTACCAC 16 V_HOXD3_01_M01338 TRANSFAC - 111053024 111053039 5.0E-06 CAGTGGTAATTACTGC 16 V_SOX5_07_M02909 TRANSFAC + 111053078 111053094 4.0E-06 AAAAAAATTGACATGGA 17 V_DLX1_01_M01439 TRANSFAC + 111053022 111053035 1.0E-06 TTGCAGTAATTACC 14 V_TCF3_05_M02920 TRANSFAC + 111053070 111053084 4.0E-06 TCTCAAAAAAAAAAA 15 V_IPF1_03_M01235 TRANSFAC + 111053025 111053034 7.0E-06 CAGTAATTAC 10 V_MIF1_01_M00279 TRANSFAC - 111051931 111051948 7.0E-06 GCGTTGCCCGGCAACCGC 18 V_PAX6_01_M00097 TRANSFAC + 111053083 111053103 6.0E-06 AATTGACATGGATGACTTCAC 21 V_HOX13_02_M01452 TRANSFAC + 111053024 111053039 4.0E-06 GCAGTAATTACCACTG 16 V_HOXC8_01_M01321 TRANSFAC + 111053022 111053037 6.0E-06 TTGCAGTAATTACCAC 16 V_HOXC8_01_M01321 TRANSFAC - 111053024 111053039 4.0E-06 CAGTGGTAATTACTGC 16 V_IPF1_06_M01438 TRANSFAC - 111053022 111053037 7.0E-06 GTGGTAATTACTGCAA 16 V_IPF1_06_M01438 TRANSFAC + 111053024 111053039 7.0E-06 GCAGTAATTACCACTG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.