Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HSPA13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6782 heat shock protein 70kDa family, member 13 chr21 - 15755009 - 15760509 15755509 Transcription Factor Binding Sites   Download all TFBS in the HSPA13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints LBX2_homeodomain_DBD_dimeric_13_1 SELEX - 15755898 15755910 0.0E+00 CTGGACCTGATTA 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 15756232 15756244 1.0E-06 AAAAACAAAAACA 13 IRF7_IRF_DBD_dimeric_14_1 SELEX - 15755926 15755939 7.0E-06 ATTAAAACGAAAGA 14 IRF7_IRF_DBD_dimeric_14_1 SELEX + 15756242 15756255 1.0E-06 ACAAAAACGAAATT 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 15755936 15755952 5.0E-06 CGCTTTAAAAGGAATTA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 15756232 15756248 8.0E-06 AAAAACAAAAACAAAAA 17 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 15755758 15755769 7.0E-06 TGTTTTCCCTCA 12 ISL2_homeodomain_DBD_monomeric_8_1 SELEX + 15756416 15756423 1.0E-05 GCACTTAA 8 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 15756245 15756256 5.0E-06 AAAACGAAATTA 12 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX - 15756292 15756300 5.0E-06 GCCACTTAA 9 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 15756415 15756423 7.0E-06 AGCACTTAA 9 Pax4_MA0068.1 JASPAR - 15755854 15755883 0.0E+00 GAAAGAAATAACTAACGGTTCTCACCCTCC 30 Pax4_MA0068.1 JASPAR + 15756251 15756280 1.0E-05 AAATTAAAAAGAAAACCCTTAGCTCTCTCT 30 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 15756293 15756308 1.0E-05 TAAGTGGCCAAAATTG 16 Tcfcp2l1_MA0145.1 JASPAR + 15755316 15755329 1.0E-06 CCAGCTAGATCCAG 14 NKX3-1_homeodomain_full_monomeric_9_1 SELEX - 15756292 15756300 8.0E-06 GCCACTTAA 9 SP1_MA0079.2 JASPAR + 15755245 15755254 7.0E-06 CCCCGCCCCC 10 znf143_MA0088.1 JASPAR - 15755795 15755814 0.0E+00 CGCTTCCCAGAATGCAAAGC 20 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 15755796 15755811 0.0E+00 TTCCCAGAATGCAAAG 16 IRF9_IRF_full_trimeric_15_1 SELEX + 15756241 15756255 5.0E-06 AACAAAAACGAAATT 15 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 15754923 15754933 9.0E-06 TCCAAGGTGAT 11 Nkx3-2_MA0122.1 JASPAR + 15756292 15756300 8.0E-06 TTAAGTGGC 9 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 15755891 15755909 6.0E-06 TGGACCTGATTAGGGGCAC 19 IRF3_IRF_full_trimeric_21_1 SELEX + 15756236 15756256 2.0E-06 ACAAAAACAAAAACGAAATTA 21 IRF3_IRF_full_trimeric_21_1 SELEX + 15756242 15756262 5.0E-06 ACAAAAACGAAATTAAAAAGA 21 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 15756230 15756242 9.0E-06 TTAAAAACAAAAA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 15756236 15756248 3.0E-06 ACAAAAACAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 15756232 15756244 0.0E+00 AAAAACAAAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 15756238 15756250 2.0E-06 AAAAACAAAAACG 13 RREB1_MA0073.1 JASPAR - 15754939 15754958 7.0E-06 CCCACACACACACCCACCCC 20 RREB1_MA0073.1 JASPAR - 15754941 15754960 1.0E-06 CACCCACACACACACCCACC 20 RREB1_MA0073.1 JASPAR - 15754945 15754964 0.0E+00 CCCCCACCCACACACACACC 20 IRF2_MA0051.1 JASPAR + 15756243 15756260 3.0E-06 CAAAAACGAAATTAAAAA 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 15756232 15756245 5.0E-06 AAAAACAAAAACAA 14 V_FOXP1_01_M00987 TRANSFAC - 15756226 15756245 5.0E-06 TTGTTTTTGTTTTTAATGGC 20 V_FOXP1_01_M00987 TRANSFAC - 15756230 15756249 6.0E-06 GTTTTTGTTTTTGTTTTTAA 20 V_FOXP1_01_M00987 TRANSFAC - 15756232 15756251 0.0E+00 TCGTTTTTGTTTTTGTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 15756238 15756257 0.0E+00 TTAATTTCGTTTTTGTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 15756244 15756263 0.0E+00 TTCTTTTTAATTTCGTTTTT 20 V_KLF15_Q2_M01714 TRANSFAC - 15755487 15755500 7.0E-06 GAGTGGGGGCGGTG 14 V_AP1_Q2_M00173 TRANSFAC - 15755282 15755292 7.0E-06 GGTGACTTAGA 11 V_TCF3_01_M01594 TRANSFAC - 15756230 15756242 5.0E-06 TTTTTGTTTTTAA 13 V_TCF3_01_M01594 TRANSFAC - 15756236 15756248 8.0E-06 TTTTTGTTTTTGT 13 V_BACH2_01_M00490 TRANSFAC + 15755332 15755342 9.0E-06 GGTGAGTCAAC 11 V_NKX29_01_M01352 TRANSFAC - 15756749 15756765 1.0E-06 AACTAAGTGCTTGAATT 17 V_BCL6_01_M01183 TRANSFAC - 15756233 15756248 5.0E-06 TTTTTGTTTTTGTTTT 16 V_BCL6_01_M01183 TRANSFAC - 15756245 15756260 8.0E-06 TTTTTAATTTCGTTTT 16 V_FOXO4_02_M00476 TRANSFAC - 15756235 15756248 5.0E-06 TTTTTGTTTTTGTT 14 V_SP1_Q6_01_M00931 TRANSFAC - 15755783 15755792 4.0E-06 GGGGCGGGGC 10 V_DR4_Q2_M00965 TRANSFAC + 15756101 15756117 5.0E-06 GAAACTCCAGTGACCCT 17 V_IRF_Q6_01_M00972 TRANSFAC - 15755825 15755835 3.0E-06 GAAAGAGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 15756242 15756257 1.0E-06 ACAAAAACGAAATTAA 16 V_GCNF_Q3_M02009 TRANSFAC - 15756305 15756314 3.0E-06 TAAGGTCAAT 10 V_AP4_Q6_M00176 TRANSFAC + 15755184 15755193 2.0E-06 CACAGCTGGT 10 V_FOXO3A_Q1_M01137 TRANSFAC + 15756231 15756242 1.0E-06 TAAAAACAAAAA 12 V_IRF3_05_M02767 TRANSFAC + 15756243 15756256 5.0E-06 CAAAAACGAAATTA 14 V_MYB_05_M02779 TRANSFAC + 15755859 15755875 4.0E-06 GTGAGAACCGTTAGTTA 17 V_FOXJ1_03_M02750 TRANSFAC + 15756229 15756244 9.0E-06 ATTAAAAACAAAAACA 16 V_SP1_03_M02281 TRANSFAC + 15755245 15755254 7.0E-06 CCCCGCCCCC 10 V_NKX24_01_M01350 TRANSFAC - 15756288 15756303 8.0E-06 TTGGCCACTTAAGACT 16 V_SP1_02_M01303 TRANSFAC - 15755243 15755253 8.0E-06 GGGGCGGGGAC 11 V_NFAT2_01_M01748 TRANSFAC + 15754989 15754997 3.0E-06 ATGGAAAAA 9 V_HELIOSA_01_M01003 TRANSFAC + 15756134 15756144 2.0E-06 TTTTGGGATAA 11 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 15756104 15756118 9.0E-06 GAGGGTCACTGGAGT 15 V_ELF4_04_M02850 TRANSFAC + 15756229 15756245 4.0E-06 ATTAAAAACAAAAACAA 17 V_COMP1_01_M00057 TRANSFAC - 15755187 15755210 4.0E-06 AGGTAGGATAGACGGCGACCAGCT 24 V_GC_01_M00255 TRANSFAC - 15755038 15755051 9.0E-06 AGGGGGAGGAGCTA 14 V_SOX7_03_M02807 TRANSFAC + 15756228 15756249 6.0E-06 CATTAAAAACAAAAACAAAAAC 22 V_FOXA2_02_M02853 TRANSFAC - 15755866 15755880 3.0E-06 AGAAATAACTAACGG 15 V_FOXA2_02_M02853 TRANSFAC - 15756440 15756454 4.0E-06 AAAAATGACAAAACC 15 V_POU3F2_01_M00463 TRANSFAC - 15756141 15756154 2.0E-06 TTGAATTCATTTAT 14 V_PR_Q2_M00960 TRANSFAC - 15755922 15755931 3.0E-06 GAAAGAACAC 10 V_RFXDC2_04_M02894 TRANSFAC - 15755274 15755290 0.0E+00 TGACTTAGAGACGGTTT 17 V_ZFP105_03_M02827 TRANSFAC + 15756228 15756242 3.0E-06 CATTAAAAACAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 15756231 15756245 1.0E-06 TAAAAACAAAAACAA 15 V_ZFP105_03_M02827 TRANSFAC + 15756234 15756248 3.0E-06 AAACAAAAACAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 15756249 15756263 8.0E-06 CGAAATTAAAAAGAA 15 V_STAF_01_M00262 TRANSFAC - 15755792 15755813 0.0E+00 GCTTCCCAGAATGCAAAGCGCG 22 V_NKX31_02_M02782 TRANSFAC - 15756288 15756304 1.0E-06 TTTGGCCACTTAAGACT 17 V_NKX26_01_M01322 TRANSFAC - 15756288 15756303 1.0E-06 TTGGCCACTTAAGACT 16 V_SPDEF_03_M02811 TRANSFAC - 15755025 15755040 0.0E+00 CTACATCCGGATCTGT 16 V_KROX_Q6_M00982 TRANSFAC + 15755246 15755259 1.0E-05 CCCGCCCCCATCCA 14 V_CEBPD_Q6_M00621 TRANSFAC + 15754917 15754928 4.0E-06 CATTTCATCACC 12 V_PXRRXR_02_M01153 TRANSFAC + 15756461 15756468 1.0E-05 AGAGTTCA 8 V_SP1_Q6_M00196 TRANSFAC - 15755782 15755794 5.0E-06 GCGGGGCGGGGCT 13 V_MYBL1_03_M02780 TRANSFAC + 15755859 15755875 2.0E-06 GTGAGAACCGTTAGTTA 17 V_HNF3_Q6_M00791 TRANSFAC + 15756232 15756244 9.0E-06 AAAAACAAAAACA 13 V_IRF_Q6_M00772 TRANSFAC - 15756244 15756258 7.0E-06 TTTAATTTCGTTTTT 15 V_NKX22_02_M01372 TRANSFAC - 15756287 15756303 2.0E-06 TTGGCCACTTAAGACTT 17 V_NKX52_01_M01315 TRANSFAC + 15756412 15756428 5.0E-06 GGTAGCACTTAATGACT 17 V_CMYB_01_M00004 TRANSFAC - 15755661 15755678 7.0E-06 CCTGCCGGCCGTTGCGTG 18 V_YY1_Q6_02_M01035 TRANSFAC + 15756335 15756345 9.0E-06 ACAGCCATTTT 11 V_REX1_03_M01744 TRANSFAC - 15756334 15756345 2.0E-06 AAAATGGCTGTC 12 V_GR_01_M00955 TRANSFAC + 15755908 15755934 8.0E-06 CAGGATTCGAGTTTGTGTTCTTTCGTT 27 V_AP4_Q5_M00175 TRANSFAC + 15755184 15755193 6.0E-06 CACAGCTGGT 10 V_HMX1_02_M01481 TRANSFAC + 15756412 15756428 5.0E-06 GGTAGCACTTAATGACT 17 V_RREB1_01_M00257 TRANSFAC - 15754946 15754959 6.0E-06 ACCCACACACACAC 14 V_RREB1_01_M00257 TRANSFAC - 15754950 15754963 8.0E-06 CCCCACCCACACAC 14 V_ISGF3G_03_M02771 TRANSFAC + 15756243 15756257 1.0E-06 CAAAAACGAAATTAA 15 V_STAF_02_M00264 TRANSFAC - 15755793 15755813 0.0E+00 GCTTCCCAGAATGCAAAGCGC 21 V_STAT3_03_M01595 TRANSFAC + 15755801 15755816 9.0E-06 CATTCTGGGAAGCGGA 16 V_SOX11_03_M02795 TRANSFAC - 15756124 15756140 9.0E-06 CCCAAAACAAAGGCAGA 17 V_SOX11_03_M02795 TRANSFAC + 15756230 15756246 1.0E-06 TTAAAAACAAAAACAAA 17 V_SOX11_03_M02795 TRANSFAC + 15756236 15756252 3.0E-06 ACAAAAACAAAAACGAA 17 V_NKX23_01_M01457 TRANSFAC + 15756750 15756765 3.0E-06 ATTCAAGCACTTAGTT 16 V_FOXO1_Q5_M01216 TRANSFAC - 15756130 15756138 8.0E-06 CAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC + 15756238 15756246 1.0E-06 AAAAACAAA 9 V_NKX32_02_M01482 TRANSFAC - 15756288 15756304 7.0E-06 TTTGGCCACTTAAGACT 17 V_IRF7_01_M00453 TRANSFAC + 15756241 15756258 4.0E-06 AACAAAAACGAAATTAAA 18 V_ZFP691_04_M02937 TRANSFAC + 15756420 15756436 4.0E-06 TTAATGACTCCTCTGAG 17 V_SP4_Q5_M01273 TRANSFAC + 15755244 15755254 9.0E-06 TCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 15755783 15755793 2.0E-06 GCCCCGCCCCG 11 V_OTX2_Q3_M01719 TRANSFAC - 15755933 15755945 7.0E-06 AAAGGAATTAAAA 13 V_IRX3_02_M01485 TRANSFAC - 15756770 15756786 7.0E-06 CCATTACAAGTAATACT 17 V_MTF1_06_M02882 TRANSFAC + 15756251 15756264 3.0E-06 AAATTAAAAAGAAA 14 V_NKX25_03_M01414 TRANSFAC - 15756288 15756303 3.0E-06 TTGGCCACTTAAGACT 16 V_FAC1_01_M00456 TRANSFAC + 15756229 15756242 8.0E-06 ATTAAAAACAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 15756235 15756248 0.0E+00 AACAAAAACAAAAA 14 V_AP1FJ_Q2_M00172 TRANSFAC - 15755282 15755292 3.0E-06 GGTGACTTAGA 11 V_FOXL1_02_M02857 TRANSFAC + 15756234 15756249 2.0E-06 AAACAAAAACAAAAAC 16 V_FOXL1_04_M02753 TRANSFAC + 15756233 15756249 6.0E-06 AAAACAAAAACAAAAAC 17 V_FOXJ3_06_M02855 TRANSFAC - 15756127 15756143 2.0E-06 TATCCCAAAACAAAGGC 17 V_NKX3A_02_M01383 TRANSFAC - 15756749 15756765 2.0E-06 AACTAAGTGCTTGAATT 17 V_FPM315_01_M01587 TRANSFAC + 15755693 15755704 4.0E-06 GGGGGAGGAGCG 12 V_FOXO3_01_M00477 TRANSFAC - 15756229 15756242 5.0E-06 TTTTTGTTTTTAAT 14 V_FOXO3_01_M00477 TRANSFAC - 15756235 15756248 4.0E-06 TTTTTGTTTTTGTT 14 V_ZFP281_01_M01597 TRANSFAC - 15755245 15755255 6.0E-06 TGGGGGCGGGG 11 V_SRF_06_M02916 TRANSFAC + 15756228 15756244 5.0E-06 CATTAAAAACAAAAACA 17 V_SRF_06_M02916 TRANSFAC + 15756229 15756245 1.0E-06 ATTAAAAACAAAAACAA 17 V_SRF_06_M02916 TRANSFAC + 15756230 15756246 2.0E-06 TTAAAAACAAAAACAAA 17 V_SRF_06_M02916 TRANSFAC + 15756236 15756252 6.0E-06 ACAAAAACAAAAACGAA 17 V_SRF_06_M02916 TRANSFAC + 15756253 15756269 5.0E-06 ATTAAAAAGAAAACCCT 17 V_SRF_06_M02916 TRANSFAC + 15756254 15756270 9.0E-06 TTAAAAAGAAAACCCTT 17 V_VDR_Q3_M00444 TRANSFAC - 15755288 15755302 3.0E-06 GAGTCAGAAAGGTGA 15 V_SOX18_04_M02905 TRANSFAC - 15756142 15756157 5.0E-06 TGCTTGAATTCATTTA 16 V_SOX4_01_M01308 TRANSFAC - 15756128 15756135 1.0E-05 AACAAAGG 8 V_SOX1_03_M02802 TRANSFAC - 15756140 15756155 9.0E-06 CTTGAATTCATTTATC 16 V_FOXO1_01_M00473 TRANSFAC + 15756237 15756246 4.0E-06 CAAAAACAAA 10 V_SOX2_Q6_M01272 TRANSFAC + 15756124 15756139 2.0E-06 TCTGCCTTTGTTTTGG 16 V_SOX2_Q6_M01272 TRANSFAC - 15756231 15756246 2.0E-06 TTTGTTTTTGTTTTTA 16 V_SOX2_Q6_M01272 TRANSFAC - 15756237 15756252 4.0E-06 TTCGTTTTTGTTTTTG 16 V_PPARG_02_M00515 TRANSFAC - 15756294 15756316 7.0E-06 CATAAGGTCAATTTTGGCCACTT 23 V_DR3_Q4_M00966 TRANSFAC + 15755286 15755306 1.0E-06 AGTCACCTTTCTGACTCCCCT 21 V_IRF1_01_M00062 TRANSFAC + 15756237 15756249 5.0E-06 CAAAAACAAAAAC 13 V_SOX12_03_M02796 TRANSFAC - 15756229 15756242 2.0E-06 TTTTTGTTTTTAAT 14 V_SP1_Q2_01_M00933 TRANSFAC + 15755245 15755254 4.0E-06 CCCCGCCCCC 10 V_HMX3_02_M01413 TRANSFAC + 15756412 15756428 5.0E-06 GGTAGCACTTAATGACT 17 V_SP1_Q4_01_M00932 TRANSFAC - 15755782 15755794 9.0E-06 GCGGGGCGGGGCT 13 V_IRXB3_01_M01377 TRANSFAC - 15756770 15756786 7.0E-06 CCATTACAAGTAATACT 17 V_TCF3_05_M02920 TRANSFAC + 15756246 15756260 7.0E-06 AAACGAAATTAAAAA 15 V_STAT1_05_M01260 TRANSFAC + 15755800 15755821 7.0E-06 GCATTCTGGGAAGCGGAGTTCC 22 V_FOXK1_03_M02752 TRANSFAC + 15756233 15756249 4.0E-06 AAAACAAAAACAAAAAC 17 V_PAX4_04_M00380 TRANSFAC + 15756240 15756269 7.0E-06 AAACAAAAACGAAATTAAAAAGAAAACCCT 30 V_SMAD1_01_M01590 TRANSFAC - 15755823 15755834 8.0E-06 AAAGAGAAAGGC 12 V_SMAD1_01_M01590 TRANSFAC - 15756127 15756138 1.0E-06 CAAAACAAAGGC 12 V_SMAD1_01_M01590 TRANSFAC + 15756232 15756243 2.0E-06 AAAAACAAAAAC 12 V_SMAD1_01_M01590 TRANSFAC + 15756238 15756249 2.0E-06 AAAAACAAAAAC 12 V_SOX9_Q4_M01284 TRANSFAC - 15756126 15756136 1.0E-06 AAACAAAGGCA 11 V_NANOG_02_M01247 TRANSFAC - 15756123 15756142 8.0E-06 ATCCCAAAACAAAGGCAGAC 20 V_NANOG_02_M01247 TRANSFAC + 15756228 15756247 1.0E-06 CATTAAAAACAAAAACAAAA 20 V_NANOG_02_M01247 TRANSFAC + 15756234 15756253 2.0E-06 AAACAAAAACAAAAACGAAA 20 V_TCF11_01_M00285 TRANSFAC + 15756446 15756458 1.0E-06 GTCATTTTTGCTG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.