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BRAF Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 673 v-raf murine sarcoma viral oncogene homolog B1 chr7 - 140624064 - 140629564 140624564 Transcription Factor Binding Sites   Download all TFBS in the BRAF promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 140624172 140624184 4.0E-06 GTAAACACACACA 13 Foxa2_MA0047.2 JASPAR - 140624298 140624309 3.0E-06 TGTTTATTTTGG 12 IRF7_IRF_DBD_dimeric_14_1 SELEX + 140623842 140623855 1.0E-05 AGAAAAGTGAAAAA 14 FOXA1_MA0148.1 JASPAR - 140624299 140624309 5.0E-06 TGTTTATTTTG 11 FOXF2_MA0030.1 JASPAR - 140624176 140624189 6.0E-06 CCTACGTAAACACA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 140624176 140624187 9.0E-06 TACGTAAACACA 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 140624934 140624949 8.0E-06 CGTTTCCATGGCTCCG 16 TBP_MA0108.2 JASPAR + 140623358 140623372 5.0E-06 CTATAAAAATGGGTA 15 NFKB1_MA0105.1 JASPAR - 140624153 140624163 3.0E-06 GGGGGTTTCCC 11 XBP1_bZIP_DBD_dimeric_12_1 SELEX - 140624821 140624832 6.0E-06 GGTGACGTCACG 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 140624821 140624832 8.0E-06 CGTGACGTCACC 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 140624839 140624850 4.0E-06 GATTACGTCACG 12 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 140623602 140623617 4.0E-06 AAAATGCTCTTAAGTG 16 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 140624152 140624164 8.0E-06 AGGGAAACCCCCC 13 JDP2_bZIP_full_dimeric_12_1 SELEX + 140624821 140624832 5.0E-06 CGTGACGTCACC 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 140624821 140624832 7.0E-06 GGTGACGTCACG 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 140624839 140624850 3.0E-06 GATTACGTCACG 12 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX + 140628578 140628587 3.0E-06 CGGACACAAG 10 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 140628445 140628456 2.0E-06 CGCCCTAAGGCA 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 140623602 140623617 3.0E-06 AAAATGCTCTTAAGTG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 140624934 140624949 6.0E-06 CGGAGCCATGGAAACG 16 NKX3-1_homeodomain_full_monomeric_9_1 SELEX - 140623611 140623619 5.0E-06 CCCACTTAA 9 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 140624299 140624309 7.0E-06 CAAAATAAACA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 140623357 140623366 9.0E-06 CCTATAAAAA 10 RELA_MA0107.1 JASPAR - 140624154 140624163 9.0E-06 GGGGGTTTCC 10 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 140624820 140624833 6.0E-06 TCGTGACGTCACCC 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 140624820 140624833 6.0E-06 GGGTGACGTCACGA 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 140624838 140624851 9.0E-06 GCGTGACGTAATCT 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 140624838 140624851 7.0E-06 AGATTACGTCACGC 14 HIC2_C2H2_DBD_monomeric_9_1 SELEX + 140624224 140624232 1.0E-05 ATGCCCACC 9 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX - 140625108 140625121 2.0E-06 TGATGACACAGAGA 14 FOXI1_MA0042.1 JASPAR - 140624301 140624312 1.0E-06 TGGTGTTTATTT 12 znf143_MA0088.1 JASPAR - 140628632 140628651 4.0E-06 GACTCTCCAGCATCCATTAA 20 CREB3_bZIP_full_dimeric_14_1 SELEX + 140624820 140624833 1.0E-06 TCGTGACGTCACCC 14 CREB3_bZIP_full_dimeric_14_1 SELEX - 140624820 140624833 3.0E-06 GGGTGACGTCACGA 14 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 140624837 140624850 8.0E-06 TGCGTGACGTAATC 14 CTCF_C2H2_full_monomeric_17_1 SELEX + 140624084 140624100 4.0E-06 TTCGCCCCCTATTGATA 17 SOX15_HMG_full_dimeric_15_1 SELEX - 140623537 140623551 7.0E-06 CTCCCTAACATTGTT 15 YY2_C2H2_full_monomeric_11_1 SELEX + 140624496 140624506 4.0E-06 GCCGCCATCTT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 140624299 140624309 3.0E-06 CAAAATAAACA 11 MZF1_5-13_MA0057.1 JASPAR + 140624547 140624556 4.0E-06 GGAGGGGGAA 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 140623357 140623366 4.0E-06 CCTATAAAAA 10 PAX9_PAX_DBD_monomeric_17_1 SELEX - 140624047 140624063 7.0E-06 GGTCACGATTGGCTGAA 17 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 140628445 140628456 2.0E-06 CGCCCTAAGGCA 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 140623357 140623366 3.0E-06 CCTATAAAAA 10 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 140628445 140628456 2.0E-06 CGCCCTAAGGCA 12 Sox1_HMG_DBD_dimeric_15_1 SELEX - 140623537 140623551 8.0E-06 CTCCCTAACATTGTT 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 140624172 140624184 3.0E-06 GTAAACACACACA 13 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 140628445 140628456 2.0E-06 CGCCCTAAGGCA 12 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 140623357 140623366 4.0E-06 CCTATAAAAA 10 Zfx_MA0146.1 JASPAR - 140624397 140624410 6.0E-06 GGCGCCGCGGCCTC 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 140625170 140625183 7.0E-06 CTAAATATATTTCC 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 140623527 140623540 4.0E-06 AACAACAGACAACA 14 V_HOXA9_01_M01351 TRANSFAC - 140628626 140628642 0.0E+00 GCATCCATTAAAATAGA 17 V_MEQ_01_M02049 TRANSFAC - 140624173 140624181 7.0E-06 AACACACAC 9 V_NFKB_C_M00208 TRANSFAC - 140628643 140628654 2.0E-06 TGGGACTCTCCA 12 V_ER_Q6_02_M00959 TRANSFAC - 140624055 140624065 5.0E-06 AAGGTCACGAT 11 V_TGIF_01_M00418 TRANSFAC - 140623463 140623473 2.0E-06 AGCTGTCAAGA 11 V_MEIS1_02_M01419 TRANSFAC - 140623462 140623477 5.0E-06 CAGAAGCTGTCAAGAT 16 V_TBX15_01_M01263 TRANSFAC + 140623515 140623533 9.0E-06 ATTTGTGAAGATAACAACA 19 V_ATF_01_M00017 TRANSFAC + 140624820 140624833 8.0E-06 TCGTGACGTCACCC 14 V_NRSF_Q4_M01028 TRANSFAC + 140624233 140624251 3.0E-06 TCCCAGCCCGCGGAGCTGG 19 V_ZEC_01_M01081 TRANSFAC - 140623977 140623989 2.0E-06 ATAGGTTAGTTGC 13 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 140624302 140624313 4.0E-06 AATAAACACCAG 12 V_MAFB_05_M02775 TRANSFAC - 140625110 140625126 3.0E-06 TATTTTGATGACACAGA 17 V_CREB_Q4_M00178 TRANSFAC - 140624821 140624832 5.0E-06 GGTGACGTCACG 12 V_CREB_Q4_M00178 TRANSFAC + 140624839 140624850 0.0E+00 CGTGACGTAATC 12 V_RELBP52_01_M01239 TRANSFAC - 140623828 140623837 8.0E-06 GGGGATTTCT 10 V_RELBP52_01_M01239 TRANSFAC - 140624154 140624163 3.0E-06 GGGGGTTTCC 10 V_MAFB_03_M02879 TRANSFAC + 140623594 140623608 4.0E-06 GAAGTGCAAAAATGC 15 V_EGR_Q6_M00807 TRANSFAC - 140624011 140624021 3.0E-06 GTGGGGGCGGC 11 V_ISL2_01_M01328 TRANSFAC - 140628629 140628644 5.0E-06 CAGCATCCATTAAAAT 16 V_IRF_Q6_01_M00972 TRANSFAC + 140623844 140623854 0.0E+00 AAAAGTGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 140623842 140623857 4.0E-06 AGAAAAGTGAAAAAGG 16 V_NFAT3_Q3_M01734 TRANSFAC - 140623653 140623662 1.0E-05 TCATTTTCCA 10 V_FOXO3A_Q1_M01137 TRANSFAC + 140623483 140623494 5.0E-06 AGAAAACAAGTA 12 V_SOX11_04_M02899 TRANSFAC - 140623795 140623808 5.0E-06 CAAATTATTTTGAT 14 V_ATF3_Q6_01_M01863 TRANSFAC - 140624839 140624849 8.0E-06 ATTACGTCACG 11 V_GABPA_04_M02858 TRANSFAC + 140623912 140623927 4.0E-06 CCATCATCCCCACGAC 16 V_FOXJ1_03_M02750 TRANSFAC - 140624172 140624187 9.0E-06 TACGTAAACACACACA 16 V_STAT6_01_M00494 TRANSFAC + 140625088 140625095 7.0E-06 TATTTCCA 8 V_STAT6_01_M00494 TRANSFAC - 140625169 140625176 7.0E-06 TATTTCCA 8 V_CREB_01_M00039 TRANSFAC + 140624841 140624848 1.0E-05 TGACGTAA 8 V_JUNDM2_03_M02772 TRANSFAC - 140624819 140624834 8.0E-06 GGGGTGACGTCACGAC 16 V_AIRE_02_M01000 TRANSFAC - 140623345 140623369 2.0E-06 CCATTTTTATAGGTCTGATTGATTT 25 V_PU1_Q4_M01172 TRANSFAC - 140623892 140623910 7.0E-06 GCTCATCATTTCCTCTCTC 19 V_HOXD13_01_M01404 TRANSFAC + 140623354 140623369 4.0E-06 AGACCTATAAAAATGG 16 V_ATF4_Q2_M00514 TRANSFAC + 140624839 140624850 6.0E-06 CGTGACGTAATC 12 V_NFY_Q6_01_M00775 TRANSFAC + 140624046 140624058 9.0E-06 CTTCAGCCAATCG 13 V_NFAT2_01_M01748 TRANSFAC + 140625168 140625176 6.0E-06 ATGGAAATA 9 V_LDSPOLYA_B_M00317 TRANSFAC + 140625207 140625222 3.0E-06 CGCGTGTTTTCTTTTC 16 V_HBP1_Q2_M01661 TRANSFAC - 140625220 140625228 3.0E-06 TTCAATGAA 9 V_TCFAP2C_04_M02925 TRANSFAC + 140628444 140628457 3.0E-06 TCGCCCTAAGGCAT 14 V_STAT4_Q4_M01666 TRANSFAC + 140625005 140625018 7.0E-06 TTACTAGAAGAGCA 14 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 140624052 140624066 5.0E-06 GAAGGTCACGATTGG 15 V_TGIF2_01_M01407 TRANSFAC - 140623462 140623477 4.0E-06 CAGAAGCTGTCAAGAT 16 V_ELF4_04_M02850 TRANSFAC + 140624295 140624311 3.0E-06 TTTCCAAAATAAACACC 17 V_ELF4_04_M02850 TRANSFAC - 140625171 140625187 4.0E-06 GTTCCTAAATATATTTC 17 V_ZNF219_01_M01122 TRANSFAC + 140624013 140624024 8.0E-06 CGCCCCCACCCC 12 V_MEIS2_01_M01488 TRANSFAC - 140623462 140623477 5.0E-06 CAGAAGCTGTCAAGAT 16 V_FREAC3_01_M00291 TRANSFAC - 140624174 140624189 2.0E-06 CCTACGTAAACACACA 16 V_TGIF_02_M01346 TRANSFAC + 140623461 140623477 2.0E-06 AATCTTGACAGCTTCTG 17 V_GCM1_04_M02862 TRANSFAC - 140624084 140624100 8.0E-06 TATCAATAGGGGGCGAA 17 V_HOXB13_01_M01467 TRANSFAC + 140623354 140623369 2.0E-06 AGACCTATAAAAATGG 16 V_GFI1_01_M00250 TRANSFAC + 140623786 140623809 2.0E-06 AAAGACTAAATCAAAATAATTTGC 24 V_GATA3_05_M02859 TRANSFAC - 140623450 140623471 9.0E-06 CTGTCAAGATTCCATCAGGTTT 22 V_NFAT_Q6_M00302 TRANSFAC + 140623650 140623661 8.0E-06 AACTGGAAAATG 12 V_TATA_01_M00252 TRANSFAC + 140623358 140623372 5.0E-06 CTATAAAAATGGGTA 15 V_NKX61_01_M00424 TRANSFAC + 140628629 140628641 5.0E-06 ATTTTAATGGATG 13 V_SP4_03_M02810 TRANSFAC - 140624760 140624776 1.0E-06 GTCTCCGCCCCCTTCCC 17 V_KROX_Q6_M00982 TRANSFAC + 140624011 140624024 0.0E+00 GCCGCCCCCACCCC 14 V_KROX_Q6_M00982 TRANSFAC - 140624760 140624773 8.0E-06 TCCGCCCCCTTCCC 14 V_HOXB9_01_M01426 TRANSFAC - 140628627 140628642 3.0E-06 GCATCCATTAAAATAG 16 V_FOXK1_04_M02856 TRANSFAC + 140623522 140623536 8.0E-06 AAGATAACAACAGAC 15 V_IRF3_Q3_M01279 TRANSFAC - 140623845 140623857 3.0E-06 CCTTTTTCACTTT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 140624299 140624309 2.0E-06 TGTTTATTTTG 11 V_IRF_Q6_M00772 TRANSFAC - 140623844 140623858 2.0E-06 CCCTTTTTCACTTTT 15 V_SOX18_03_M02801 TRANSFAC - 140623531 140623546 1.0E-05 TAACATTGTTGTCTGT 16 V_SZF11_01_M01109 TRANSFAC + 140623583 140623597 1.0E-06 CCAGGGTAAGAGAAG 15 V_TATA_C_M00216 TRANSFAC + 140623357 140623366 2.0E-06 CCTATAAAAA 10 V_YY1_Q6_02_M01035 TRANSFAC + 140624496 140624506 7.0E-06 GCCGCCATCTT 11 V_CREBATF_Q6_M00981 TRANSFAC + 140624840 140624848 3.0E-06 GTGACGTAA 9 V_OCT1_04_M00138 TRANSFAC + 140625160 140625182 7.0E-06 AGAATTTGATGGAAATATATTTA 23 V_REX1_03_M01744 TRANSFAC - 140624495 140624506 1.0E-06 AAGATGGCGGCG 12 V_HBP1_03_M02762 TRANSFAC - 140625216 140625231 9.0E-06 TTCTTCAATGAAAAGA 16 V_SP1SP3_Q4_M01219 TRANSFAC - 140624762 140624772 4.0E-06 CCGCCCCCTTC 11 V_WHN_B_M00332 TRANSFAC + 140624727 140624737 9.0E-06 AAGGACGCTAG 11 V_ATF3_Q6_M00513 TRANSFAC + 140624820 140624833 3.0E-06 TCGTGACGTCACCC 14 V_STAF_02_M00264 TRANSFAC - 140628630 140628650 2.0E-06 ACTCTCCAGCATCCATTAAAA 21 V_CREB_Q2_01_M00916 TRANSFAC - 140624819 140624832 6.0E-06 GGTGACGTCACGAC 14 V_TBP_06_M02814 TRANSFAC - 140625169 140625184 7.0E-06 CCTAAATATATTTCCA 16 V_TGIF1_01_M03111 TRANSFAC + 140623461 140623477 2.0E-06 AATCTTGACAGCTTCTG 17 V_ISGF4G_04_M02875 TRANSFAC + 140628478 140628491 1.0E-05 GGAAAACAAATCTA 14 V_FOXO1_Q5_M01216 TRANSFAC + 140628479 140628487 5.0E-06 GAAAACAAA 9 V_IRF7_01_M00453 TRANSFAC + 140623841 140623858 3.0E-06 TAGAAAAGTGAAAAAGGG 18 V_TFIII_Q6_M00706 TRANSFAC + 140625053 140625061 6.0E-06 AGAGGGAGG 9 V_FREAC2_01_M00290 TRANSFAC - 140624174 140624189 4.0E-06 CCTACGTAAACACACA 16 V_CREM_Q6_M01820 TRANSFAC + 140624823 140624833 1.0E-06 TGACGTCACCC 11 V_VJUN_01_M00036 TRANSFAC - 140624819 140624834 3.0E-06 GGGGTGACGTCACGAC 16 V_GATA1_05_M00346 TRANSFAC + 140623521 140623530 6.0E-06 GAAGATAACA 10 V_GABPBETA_Q3_M01876 TRANSFAC + 140623895 140623905 8.0E-06 AGAGGAAATGA 11 V_CREBP1_Q2_M00179 TRANSFAC + 140624821 140624832 3.0E-06 CGTGACGTCACC 12 V_CREBP1_Q2_M00179 TRANSFAC - 140624821 140624832 4.0E-06 GGTGACGTCACG 12 V_MRG2_01_M01395 TRANSFAC - 140623462 140623477 7.0E-06 CAGAAGCTGTCAAGAT 16 V_FOXL1_02_M02857 TRANSFAC + 140623793 140623808 3.0E-06 AAATCAAAATAATTTG 16 V_FOXL1_02_M02857 TRANSFAC + 140625116 140625131 1.0E-05 TCATCAAAATAAGAAC 16 V_ATF1_03_M02738 TRANSFAC - 140624819 140624834 7.0E-06 GGGGTGACGTCACGAC 16 V_ATF2_Q5_M01862 TRANSFAC + 140624838 140624849 4.0E-06 GCGTGACGTAAT 12 V_TCFAP2B_03_M02820 TRANSFAC + 140628444 140628457 0.0E+00 TCGCCCTAAGGCAT 14 V_TCFAP2B_03_M02820 TRANSFAC - 140628444 140628457 4.0E-06 ATGCCTTAGGGCGA 14 V_CREB_Q2_M00177 TRANSFAC - 140624821 140624832 8.0E-06 GGTGACGTCACG 12 V_CREB_Q2_M00177 TRANSFAC + 140624839 140624850 1.0E-06 CGTGACGTAATC 12 V_FPM315_01_M01587 TRANSFAC + 140624624 140624635 9.0E-06 CGGGGAGGAGCG 12 V_FOXO3_01_M00477 TRANSFAC + 140624174 140624187 3.0E-06 TGTGTGTTTACGTA 14 V_FOXA2_03_M02260 TRANSFAC - 140624298 140624309 3.0E-06 TGTTTATTTTGG 12 V_FOX_Q2_M00809 TRANSFAC - 140624300 140624312 7.0E-06 TGGTGTTTATTTT 13 V_ETS1_B_M00339 TRANSFAC + 140623895 140623909 7.0E-06 AGAGGAAATGATGAG 15 V_BBX_03_M02739 TRANSFAC + 140625217 140625231 1.0E-06 CTTTTCATTGAAGAA 15 V_BBX_03_M02739 TRANSFAC - 140625217 140625231 2.0E-06 TTCTTCAATGAAAAG 15 V_IRF1_Q6_01_M01881 TRANSFAC - 140623843 140623856 1.0E-06 CTTTTTCACTTTTC 14 V_HFH3_01_M00289 TRANSFAC - 140624300 140624312 1.0E-06 TGGTGTTTATTTT 13 V_FOXJ2_01_M00422 TRANSFAC + 140624297 140624314 4.0E-06 TCCAAAATAAACACCAGC 18 V_DR3_Q4_M00966 TRANSFAC - 140623842 140623862 4.0E-06 GCTGCCCTTTTTCACTTTTCT 21 V_IRF1_01_M00062 TRANSFAC + 140623843 140623855 1.0E-06 GAAAAGTGAAAAA 13 V_CREB_02_M00113 TRANSFAC - 140624823 140624834 3.0E-06 GGGGTGACGTCA 12 V_PAX4_02_M00377 TRANSFAC + 140623799 140623809 9.0E-06 AAATAATTTGC 11 V_PIT1_Q6_M00802 TRANSFAC - 140625216 140625233 8.0E-06 AATTCTTCAATGAAAAGA 18 V_SRY_05_M02917 TRANSFAC + 140623387 140623403 7.0E-06 TGAATGCACAATGGACG 17 V_FREAC4_01_M00292 TRANSFAC + 140624298 140624313 3.0E-06 CCAAAATAAACACCAG 16 V_AP2ALPHA_02_M01045 TRANSFAC + 140624706 140624720 8.0E-06 CGAGCCTGAGGGGAT 15 V_AP2ALPHA_02_M01045 TRANSFAC - 140628444 140628458 9.0E-06 AATGCCTTAGGGCGA 15 V_UF1H3BETA_Q6_M01068 TRANSFAC + 140624547 140624560 6.0E-06 GGAGGGGGAAGGGA 14 V_CMAF_01_M01070 TRANSFAC - 140625108 140625126 2.0E-06 TATTTTGATGACACAGAGA 19 V_HOXD10_01_M01375 TRANSFAC - 140628625 140628641 1.0E-06 CATCCATTAAAATAGAA 17 V_ATF_B_M00338 TRANSFAC + 140624822 140624833 6.0E-06 GTGACGTCACCC 12 V_RNF96_01_M01199 TRANSFAC + 140624685 140624694 7.0E-06 GCCCGCGGCC 10 V_AP2_Q3_M00800 TRANSFAC + 140624646 140624661 6.0E-06 CGCCGCGGGCGGAGGG 16 V_NANOG_02_M01247 TRANSFAC - 140628617 140628636 9.0E-06 ATTAAAATAGAATGCAAGAT 20

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