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SCN2A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6326 sodium channel, voltage-gated, type II, alpha subunit chr2 + 166090911 - 166096411 166095911 Transcription Factor Binding Sites   Download all TFBS in the SCN2A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 166095849 166095867 1.0E-06 TGACCAGGAGATGGAGCTG 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 166095885 166095897 3.0E-06 ATAAATAAATAAA 13 E2F4_E2F_DBD_dimeric_12_2 SELEX - 166095040 166095051 2.0E-06 TTTGGGGCCAAA 12 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 166095025 166095042 2.0E-06 GAAATTAAAGATCGATTT 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 166095026 166095042 1.0E-06 AAATTAAAGATCGATTT 17 POU3F3_POU_DBD_monomeric_12_1 SELEX - 166095886 166095897 1.0E-06 ATAAATAAATAA 12 POU3F3_POU_DBD_monomeric_12_1 SELEX - 166095890 166095901 6.0E-06 AAAAATAAATAA 12 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 166095886 166095899 1.0E-05 AAATAAATAAATAA 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 166095895 166095908 7.0E-06 AAATTAGAAAAATA 14 FOXF2_MA0030.1 JASPAR - 166095889 166095902 8.0E-06 GAAAAATAAATAAA 14 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 166095885 166095897 4.0E-06 ATAAATAAATAAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 166095885 166095896 0.0E+00 TAAATAAATAAA 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 166095889 166095900 0.0E+00 AAAATAAATAAA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 166095886 166095898 3.0E-06 AATAAATAAATAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 166095886 166095898 0.0E+00 AATAAATAAATAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 166095890 166095902 2.0E-06 GAAAAATAAATAA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX - 166095886 166095896 7.0E-06 TAAATAAATAA 11 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 166095886 166095896 1.0E-06 TAAATAAATAA 11 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 166095890 166095900 3.0E-06 AAAATAAATAA 11 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 166095795 166095806 4.0E-06 TATGTGCTGACT 12 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX + 166095062 166095071 9.0E-06 GTTGTAAAAA 10 Barhl1_homeodomain_DBD_monomeric_10_1 SELEX - 166095783 166095792 7.0E-06 ATTAAATGAT 10 POU3F3_POU_DBD_monomeric_13_1 SELEX + 166095896 166095908 9.0E-06 ATTTTTCTAATTT 13 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 166095887 166095897 0.0E+00 ATAAATAAATA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 166095891 166095901 2.0E-06 AAAAATAAATA 11 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 166095884 166095898 5.0E-06 AATAAATAAATAAAG 15 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 166095885 166095898 1.0E-05 AATAAATAAATAAA 14 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 166095889 166095902 6.0E-06 GAAAAATAAATAAA 14 FOXI1_MA0042.1 JASPAR + 166095888 166095899 2.0E-06 ATTTATTTATTT 12 BARHL2_homeodomain_full_monomeric_10_1 SELEX - 166095783 166095792 5.0E-06 ATTAAATGAT 10 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 166095885 166095897 5.0E-06 ATAAATAAATAAA 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 166095887 166095897 0.0E+00 ATAAATAAATA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 166095891 166095901 1.0E-06 AAAAATAAATA 11 NRL_bZIP_DBD_monomeric_11_1 SELEX + 166095795 166095805 4.0E-06 TATGTGCTGAC 11 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 166095025 166095042 4.0E-06 GAAATTAAAGATCGATTT 18 POU1F1_POU_DBD_monomeric_17_1 SELEX - 166095884 166095900 7.0E-06 AAAATAAATAAATAAAG 17 Foxd3_MA0041.1 JASPAR + 166095884 166095895 8.0E-06 CTTTATTTATTT 12 Foxd3_MA0041.1 JASPAR + 166095888 166095899 1.0E-06 ATTTATTTATTT 12 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 166095792 166095800 9.0E-06 CACATAAAA 9 POU3F1_POU_DBD_monomeric_12_2 SELEX - 166095886 166095897 1.0E-06 ATAAATAAATAA 12 POU3F1_POU_DBD_monomeric_12_2 SELEX - 166095890 166095901 8.0E-06 AAAAATAAATAA 12 REST_MA0138.2 JASPAR + 166094994 166095014 0.0E+00 CTCAGCACCATGGACAGCGTT 21 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 166095884 166095898 7.0E-06 AATAAATAAATAAAG 15 POU3F3_POU_DBD_dimeric_12_1 SELEX - 166095886 166095897 4.0E-06 ATAAATAAATAA 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 166095025 166095042 3.0E-06 GAAATTAAAGATCGATTT 18 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 166095883 166095895 2.0E-06 AAATAAATAAAGG 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 166095887 166095899 0.0E+00 AAATAAATAAATA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 166095891 166095903 1.0E-06 AGAAAAATAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 166095885 166095897 7.0E-06 ATAAATAAATAAA 13 E2F2_E2F_DBD_dimeric_18_1 SELEX + 166095037 166095054 7.0E-06 CGATTTGGCCCCAAATTA 18 E2F2_E2F_DBD_dimeric_18_1 SELEX - 166095037 166095054 5.0E-06 TAATTTGGGGCCAAATCG 18 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 166095886 166095896 3.0E-06 TAAATAAATAA 11 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 166095890 166095900 7.0E-06 AAAATAAATAA 11 E2F3_E2F_DBD_dimeric_18_3 SELEX + 166095037 166095054 2.0E-06 CGATTTGGCCCCAAATTA 18 E2F3_E2F_DBD_dimeric_18_3 SELEX - 166095037 166095054 2.0E-06 TAATTTGGGGCCAAATCG 18 POU4F1_POU_DBD_monomeric_14_1 SELEX - 166095884 166095897 2.0E-06 ATAAATAAATAAAG 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 166095885 166095898 3.0E-06 AATAAATAAATAAA 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 166095889 166095902 1.0E-06 GAAAAATAAATAAA 14 IRF2_MA0051.1 JASPAR - 166095833 166095850 8.0E-06 CAAAAGTGGAACCATCTT 18 V_HOXA9_01_M01351 TRANSFAC - 166095787 166095803 1.0E-06 CAGCACATAAAATTAAA 17 V_FOXP1_01_M00987 TRANSFAC + 166095886 166095905 5.0E-06 TTATTTATTTATTTTTCTAA 20 V_FOXP1_01_M00987 TRANSFAC + 166095890 166095909 1.0E-06 TTATTTATTTTTCTAATTTA 20 V_FOXP1_01_M00987 TRANSFAC + 166095894 166095913 5.0E-06 TTATTTTTCTAATTTAGCAT 20 V_HNF3B_01_M00131 TRANSFAC + 166095886 166095900 0.0E+00 TTATTTATTTATTTT 15 V_TGIF_01_M00418 TRANSFAC + 166095863 166095873 6.0E-06 AGCTGTCATGT 11 V_MEIS1_02_M01419 TRANSFAC + 166095859 166095874 6.0E-06 ATGGAGCTGTCATGTA 16 V_DBX1_01_M01483 TRANSFAC - 166095883 166095899 1.0E-06 AAATAAATAAATAAAGG 17 V_FREAC7_01_M00293 TRANSFAC - 166095883 166095898 1.0E-06 AATAAATAAATAAAGG 16 V_FREAC7_01_M00293 TRANSFAC - 166095887 166095902 1.0E-06 GAAAAATAAATAAATA 16 V_APOLYA_B_M00310 TRANSFAC + 166095028 166095042 4.0E-06 ATTAAAGATCGATTT 15 V_XFD1_01_M00267 TRANSFAC - 166095883 166095896 1.0E-06 TAAATAAATAAAGG 14 V_MAFK_03_M02776 TRANSFAC + 166095793 166095807 5.0E-06 TTTATGTGCTGACTG 15 V_FOXA2_04_M02749 TRANSFAC - 166095882 166095898 0.0E+00 AATAAATAAATAAAGGC 17 V_FOXA2_04_M02749 TRANSFAC - 166095886 166095902 1.0E-06 GAAAAATAAATAAATAA 17 V_NRSF_Q4_M01028 TRANSFAC - 166094995 166095013 0.0E+00 ACGCTGTCCATGGTGCTGA 19 V_HMGIY_Q3_M01010 TRANSFAC - 166095021 166095035 8.0E-06 TCTTTAATTTCCTAT 15 V_HMGIY_Q3_M01010 TRANSFAC + 166095785 166095799 8.0E-06 CATTTAATTTTATGT 15 V_HMGIY_Q3_M01010 TRANSFAC + 166095891 166095905 3.0E-06 TATTTATTTTTCTAA 15 V_EVI1_04_M00081 TRANSFAC - 166095887 166095901 3.0E-06 AAAAATAAATAAATA 15 V_EVI1_04_M00081 TRANSFAC - 166095894 166095908 9.0E-06 AAATTAGAAAAATAA 15 V_FOXD3_01_M00130 TRANSFAC + 166095884 166095895 5.0E-06 CTTTATTTATTT 12 V_FOXD3_01_M00130 TRANSFAC + 166095888 166095899 1.0E-06 ATTTATTTATTT 12 V_BCL6_01_M01183 TRANSFAC + 166095884 166095899 6.0E-06 CTTTATTTATTTATTT 16 V_BCL6_01_M01183 TRANSFAC + 166095885 166095900 8.0E-06 TTTATTTATTTATTTT 16 V_BCL6_01_M01183 TRANSFAC + 166095886 166095901 1.0E-06 TTATTTATTTATTTTT 16 V_MAFB_05_M02775 TRANSFAC + 166095794 166095810 9.0E-06 TTATGTGCTGACTGCTA 17 V_SATB1_Q3_M01723 TRANSFAC + 166095025 166095040 4.0E-06 GAAATTAAAGATCGAT 16 V_AR_Q6_01_M01996 TRANSFAC - 166095954 166095968 6.0E-06 TAGCTTTCTGTTCTG 15 V_MAFB_03_M02879 TRANSFAC + 166095060 166095074 6.0E-06 GTGTTGTAAAAAAGT 15 V_FOXO3A_Q1_M01137 TRANSFAC - 166095887 166095898 1.0E-06 AATAAATAAATA 12 V_HNF3_Q6_01_M01012 TRANSFAC + 166095882 166095899 0.0E+00 GCCTTTATTTATTTATTT 18 V_HNF3_Q6_01_M01012 TRANSFAC + 166095886 166095903 0.0E+00 TTATTTATTTATTTTTCT 18 V_HNF3_Q6_01_M01012 TRANSFAC + 166095890 166095907 5.0E-06 TTATTTATTTTTCTAATT 18 V_FOXJ1_03_M02750 TRANSFAC - 166095885 166095900 1.0E-06 AAAATAAATAAATAAA 16 V_HFH4_01_M00742 TRANSFAC + 166095884 166095896 2.0E-06 CTTTATTTATTTA 13 V_HFH4_01_M00742 TRANSFAC + 166095888 166095900 3.0E-06 ATTTATTTATTTT 13 V_PRX2_Q2_M02115 TRANSFAC - 166095788 166095796 5.0E-06 TAAAATTAA 9 V_LHX3A_01_M00510 TRANSFAC + 166095786 166095795 7.0E-06 ATTTAATTTT 10 V_TCFAP2E_04_M02926 TRANSFAC + 166095074 166095087 6.0E-06 TGGGAGAAAAAAAA 14 V_CDX_Q5_M00991 TRANSFAC - 166095885 166095902 0.0E+00 GAAAAATAAATAAATAAA 18 V_NKX62_Q2_M00489 TRANSFAC - 166095889 166095900 7.0E-06 AAAATAAATAAA 12 V_PAX_Q6_M00808 TRANSFAC + 166094963 166094973 7.0E-06 CTAGAACTCAC 11 V_ELF4_04_M02850 TRANSFAC - 166095890 166095906 3.0E-06 ATTAGAAAAATAAATAA 17 V_SOX13_03_M02797 TRANSFAC - 166095891 166095906 2.0E-06 ATTAGAAAAATAAATA 16 V_MEIS2_01_M01488 TRANSFAC + 166095859 166095874 7.0E-06 ATGGAGCTGTCATGTA 16 V_POU3F2_01_M00463 TRANSFAC + 166095880 166095893 3.0E-06 CTGCCTTTATTTAT 14 V_ZFP105_03_M02827 TRANSFAC - 166095884 166095898 6.0E-06 AATAAATAAATAAAG 15 V_ZFP105_03_M02827 TRANSFAC - 166095887 166095901 6.0E-06 AAAAATAAATAAATA 15 V_NKX61_01_M00424 TRANSFAC + 166095785 166095797 2.0E-06 CATTTAATTTTAT 13 V_IRF2_01_M00063 TRANSFAC - 166095838 166095850 6.0E-06 CAAAAGTGGAACC 13 V_AMEF2_Q6_M00403 TRANSFAC + 166094978 166094995 4.0E-06 AGTTCTAAAATTGGTTCT 18 V_AP1_Q6_01_M00925 TRANSFAC + 166096929 166096937 7.0E-06 ATGACTCAG 9 V_HNF3_Q6_M00791 TRANSFAC - 166095885 166095897 0.0E+00 ATAAATAAATAAA 13 V_HNF3_Q6_M00791 TRANSFAC - 166095889 166095901 0.0E+00 AAAAATAAATAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 166095887 166095897 2.0E-06 TATTTATTTAT 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 166095891 166095901 1.0E-06 TATTTATTTTT 11 V_IRF_Q6_M00772 TRANSFAC - 166095955 166095969 6.0E-06 TTAGCTTTCTGTTCT 15 V_BCL6_Q3_M01171 TRANSFAC - 166094961 166094970 8.0E-06 AGTTCTAGGT 10 V_REST_01_M01256 TRANSFAC - 166094997 166095018 0.0E+00 CAGTAACGCTGTCCATGGTGCT 22 V_OCT1_04_M00138 TRANSFAC - 166095889 166095911 1.0E-05 GCTAAATTAGAAAAATAAATAAA 23 V_PIT1_01_M01465 TRANSFAC - 166095883 166095899 8.0E-06 AAATAAATAAATAAAGG 17 V_SOX12_04_M02900 TRANSFAC + 166095810 166095825 9.0E-06 ACATAGCCAAAGGAAC 16 V_SOX12_04_M02900 TRANSFAC - 166095892 166095907 9.0E-06 AATTAGAAAAATAAAT 16 V_SPIB_01_M01204 TRANSFAC - 166095834 166095850 8.0E-06 CAAAAGTGGAACCATCT 17 V_AP1_C_M00199 TRANSFAC + 166096929 166096937 6.0E-06 ATGACTCAG 9 V_XFD2_01_M00268 TRANSFAC - 166095883 166095896 2.0E-06 TAAATAAATAAAGG 14 V_XFD2_01_M00268 TRANSFAC - 166095887 166095900 1.0E-06 AAAATAAATAAATA 14 V_HB24_01_M01399 TRANSFAC - 166095885 166095899 7.0E-06 AAATAAATAAATAAA 15 V_TBP_06_M02814 TRANSFAC + 166095883 166095898 1.0E-06 CCTTTATTTATTTATT 16 V_TBP_06_M02814 TRANSFAC + 166095885 166095900 4.0E-06 TTTATTTATTTATTTT 16 V_TBP_06_M02814 TRANSFAC + 166095887 166095902 7.0E-06 TATTTATTTATTTTTC 16 V_TBP_06_M02814 TRANSFAC - 166095887 166095902 2.0E-06 GAAAAATAAATAAATA 16 V_TBP_06_M02814 TRANSFAC + 166095889 166095904 7.0E-06 TTTATTTATTTTTCTA 16 V_CTCF_02_M01259 TRANSFAC + 166095846 166095865 1.0E-06 TTTTGACCAGGAGATGGAGC 20 V_LHX3b_01_M01971 TRANSFAC + 166095786 166095795 5.0E-06 ATTTAATTTT 10 V_CTCF_01_M01200 TRANSFAC + 166095848 166095867 1.0E-06 TTGACCAGGAGATGGAGCTG 20 V_MAF_Q6_01_M00983 TRANSFAC - 166096929 166096939 1.0E-06 TCCTGAGTCAT 11 V_IRF7_01_M00453 TRANSFAC + 166095022 166095039 5.0E-06 TAGGAAATTAAAGATCGA 18 V_GR_Q6_02_M01836 TRANSFAC - 166095953 166095965 3.0E-06 CTTTCTGTTCTGA 13 V_ELF1_Q6_M00746 TRANSFAC + 166095018 166095029 8.0E-06 GCAATAGGAAAT 12 V_HFH8_01_M00294 TRANSFAC + 166095884 166095896 1.0E-06 CTTTATTTATTTA 13 V_HFH8_01_M00294 TRANSFAC + 166095888 166095900 6.0E-06 ATTTATTTATTTT 13 V_AP1_Q4_01_M00926 TRANSFAC - 166096929 166096936 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC - 166095885 166095898 7.0E-06 AATAAATAAATAAA 14 V_MTF1_06_M02882 TRANSFAC - 166095895 166095908 0.0E+00 AAATTAGAAAAATA 14 V_CEBPA_01_M00116 TRANSFAC - 166095895 166095908 8.0E-06 AAATTAGAAAAATA 14 V_FOXL1_04_M02753 TRANSFAC - 166095882 166095898 0.0E+00 AATAAATAAATAAAGGC 17 V_FOXL1_04_M02753 TRANSFAC - 166095886 166095902 0.0E+00 GAAAAATAAATAAATAA 17 V_TCF7_04_M02921 TRANSFAC - 166095896 166095910 8.0E-06 CTAAATTAGAAAAAT 15 V_FRA1_Q5_M01267 TRANSFAC - 166096929 166096936 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC - 166096928 166096940 0.0E+00 CTCCTGAGTCATT 13 V_NRSF_01_M00256 TRANSFAC + 166094994 166095014 0.0E+00 CTCAGCACCATGGACAGCGTT 21 V_ZBTB12_03_M02824 TRANSFAC - 166094958 166094974 5.0E-06 GGTGAGTTCTAGGTCTT 17 V_FOX_Q2_M00809 TRANSFAC + 166095884 166095896 0.0E+00 CTTTATTTATTTA 13 V_REST_02_M02256 TRANSFAC + 166094994 166095014 0.0E+00 CTCAGCACCATGGACAGCGTT 21 V_PLZF_02_M01075 TRANSFAC + 166095018 166095046 2.0E-06 GCAATAGGAAATTAAAGATCGATTTGGCC 29 V_BBX_03_M02739 TRANSFAC + 166095780 166095794 6.0E-06 TACATCATTTAATTT 15 V_BBX_03_M02739 TRANSFAC - 166095780 166095794 1.0E-06 AAATTAAATGATGTA 15 V_OCT1_07_M00248 TRANSFAC - 166095050 166095061 7.0E-06 ACCATTTTAATT 12 V_SOX8_03_M02808 TRANSFAC + 166095890 166095906 8.0E-06 TTATTTATTTTTCTAAT 17 V_SRF_06_M02916 TRANSFAC - 166095890 166095906 1.0E-06 ATTAGAAAAATAAATAA 17 V_HFH3_01_M00289 TRANSFAC + 166095884 166095896 6.0E-06 CTTTATTTATTTA 13 V_HFH3_01_M00289 TRANSFAC + 166095888 166095900 1.0E-06 ATTTATTTATTTT 13 V_FOXJ2_01_M00422 TRANSFAC - 166095882 166095899 1.0E-06 AAATAAATAAATAAAGGC 18 V_FOXJ2_01_M00422 TRANSFAC - 166095886 166095903 0.0E+00 AGAAAAATAAATAAATAA 18 V_HOXD8_01_M01432 TRANSFAC - 166095880 166095896 5.0E-06 TAAATAAATAAAGGCAG 17 V_HNF3B_Q6_M02014 TRANSFAC + 166095886 166095894 1.0E-05 TTATTTATT 9 V_HNF3B_Q6_M02014 TRANSFAC + 166095890 166095898 1.0E-05 TTATTTATT 9 V_IRF1_01_M00062 TRANSFAC - 166095838 166095850 8.0E-06 CAAAAGTGGAACC 13 V_CMAF_01_M01070 TRANSFAC + 166095794 166095812 5.0E-06 TTATGTGCTGACTGCTACA 19 V_HOXD10_01_M01375 TRANSFAC - 166095787 166095803 6.0E-06 CAGCACATAAAATTAAA 17 V_TCF3_05_M02920 TRANSFAC + 166095074 166095088 7.0E-06 TGGGAGAAAAAAAAT 15 V_TCF3_05_M02920 TRANSFAC + 166095075 166095089 8.0E-06 GGGAGAAAAAAAATG 15 V_ARID5A_04_M02840 TRANSFAC + 166095015 166095031 6.0E-06 ACTGCAATAGGAAATTA 17 V_FOXK1_03_M02752 TRANSFAC - 166095882 166095898 3.0E-06 AATAAATAAATAAAGGC 17 V_FOXK1_03_M02752 TRANSFAC - 166095886 166095902 2.0E-06 GAAAAATAAATAAATAA 17 V_PAX4_04_M00380 TRANSFAC + 166095068 166095097 5.0E-06 AAAAAGTGGGAGAAAAAAAATGCCTATCCT 30 V_PAX4_04_M00380 TRANSFAC - 166095864 166095893 1.0E-06 ATAAATAAAGGCAGCATCTTACATGACAGC 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.