Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

UTP3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57050 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) chr4 + 71549195 - 71554695 71554195 Transcription Factor Binding Sites   Download all TFBS in the UTP3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 71550462 71550479 7.0E-06 AGTGTAATTATTAATAGC 18 CTCF_MA0139.1 JASPAR - 71553947 71553965 0.0E+00 TGGCCAATAGAGGGCGCTG 19 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 71554126 71554136 1.0E-05 GTTAAAGGGCA 11 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 71550462 71550473 3.0E-06 GCTATTAATAAT 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 71550462 71550473 4.0E-06 ATTATTAATAGC 12 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 71553733 71553743 6.0E-06 TGCCTGAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 71553733 71553743 0.0E+00 AGCCTCAGGCA 11 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 71550462 71550473 4.0E-06 GCTATTAATAAT 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 71550462 71550473 7.0E-06 ATTATTAATAGC 12 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 71553733 71553743 8.0E-06 TGCCTGAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 71553733 71553743 0.0E+00 AGCCTCAGGCA 11 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX - 71557596 71557604 5.0E-06 GCCACTTAA 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 71550464 71550477 4.0E-06 TATTAATAATTACA 14 Pax4_MA0068.1 JASPAR - 71550445 71550474 9.0E-06 AATTATTAATAGCACCTCCTTTCACTCTCA 30 OTX2_homeodomain_DBD_dimeric_15_1 SELEX - 71554028 71554042 5.0E-06 GCTAATGCGCTTACT 15 MEF2B_MADS_full_dimeric_12_1 SELEX + 71550462 71550473 3.0E-06 GCTATTAATAAT 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 71550462 71550473 5.0E-06 ATTATTAATAGC 12 REL_MA0101.1 JASPAR - 71554240 71554249 6.0E-06 TGGAATTTCC 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 71550464 71550477 5.0E-06 TATTAATAATTACA 14 NKX3-1_homeodomain_full_monomeric_9_1 SELEX - 71557596 71557604 8.0E-06 GCCACTTAA 9 MEF2A_MA0052.1 JASPAR + 71550463 71550472 7.0E-06 CTATTAATAA 10 MEF2A_MA0052.1 JASPAR - 71550463 71550472 5.0E-06 TTATTAATAG 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 71553824 71553837 5.0E-06 GAAAAGAGAAAACA 14 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 71550464 71550478 2.0E-06 TATTAATAATTACAC 15 RELA_MA0107.1 JASPAR - 71554240 71554249 3.0E-06 TGGAATTTCC 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 71553243 71553252 9.0E-06 AAAAATTAGC 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 71550464 71550477 6.0E-06 TATTAATAATTACA 14 Otx1_homeodomain_DBD_dimeric_15_1 SELEX - 71554028 71554042 4.0E-06 GCTAATGCGCTTACT 15 CTCF_C2H2_full_monomeric_17_1 SELEX + 71553948 71553964 0.0E+00 AGCGCCCTCTATTGGCC 17 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 71550465 71550477 4.0E-06 TGTAATTATTAAT 13 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 71550445 71550459 4.0E-06 TGAGAGTGAAAGGAG 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 71550464 71550477 1.0E-06 TATTAATAATTACA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 71550464 71550477 4.0E-06 TGTAATTATTAATA 14 Nkx3-2_MA0122.1 JASPAR + 71557596 71557604 8.0E-06 TTAAGTGGC 9 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 71553733 71553743 4.0E-06 TGCCTGAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 71553733 71553743 0.0E+00 AGCCTCAGGCA 11 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 71553821 71553836 8.0E-06 GCAGAAAAGAGAAAAC 16 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX + 71554369 71554377 1.0E-05 CGCTGTAAA 9 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 71550464 71550478 3.0E-06 TATTAATAATTACAC 15 ELF5_MA0136.1 JASPAR + 71554067 71554075 9.0E-06 AACTTCCTT 9 ELF5_MA0136.1 JASPAR - 71554144 71554152 9.0E-06 AACTTCCTT 9 TBX1_TBX_DBD_dimeric_20_1 SELEX + 71550446 71550465 5.0E-06 GAGAGTGAAAGGAGGTGCTA 20 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 71553733 71553743 6.0E-06 TGCCTGAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 71553733 71553743 1.0E-06 AGCCTCAGGCA 11 HNF1A_MA0046.1 JASPAR + 71550464 71550477 2.0E-06 TATTAATAATTACA 14 V_NFKAPPAB65_01_M00052 TRANSFAC - 71554240 71554249 1.0E-06 TGGAATTTCC 10 V_ATF5_01_M01295 TRANSFAC - 71554231 71554241 4.0E-06 CCTCTTCCTTC 11 V_RHOX11_01_M01347 TRANSFAC + 71554365 71554381 4.0E-06 GAGTCGCTGTAAAACCT 17 V_DLX3_01_M01400 TRANSFAC + 71550464 71550480 5.0E-06 TATTAATAATTACACTG 17 V_HMGIY_Q3_M01010 TRANSFAC - 71554237 71554251 3.0E-06 ACTGGAATTTCCTCT 15 V_GATA3_03_M00351 TRANSFAC + 71554096 71554105 3.0E-06 AAAGATTTTA 10 V_IK_Q5_M01169 TRANSFAC - 71553335 71553344 3.0E-06 TTTGGGAGGC 10 V_MEF2_02_M00231 TRANSFAC + 71550456 71550477 5.0E-06 GGAGGTGCTATTAATAATTACA 22 V_MEF2_02_M00231 TRANSFAC - 71550458 71550479 4.0E-06 AGTGTAATTATTAATAGCACCT 22 V_IRF_Q6_01_M00972 TRANSFAC + 71553825 71553835 3.0E-06 AAAAGAGAAAA 11 V_ZFP740_03_M02834 TRANSFAC - 71553762 71553777 4.0E-06 CCCCCACCCCCAATAC 16 V_IRF2_Q6_M01882 TRANSFAC + 71553823 71553838 2.0E-06 AGAAAAGAGAAAACAA 16 V_NFAT3_Q3_M01734 TRANSFAC - 71553845 71553854 1.0E-05 TAGTTTTCCT 10 V_HOXA4_01_M01370 TRANSFAC + 71550464 71550480 9.0E-06 TATTAATAATTACACTG 17 V_NKX61_03_M01489 TRANSFAC + 71550464 71550480 1.0E-06 TATTAATAATTACACTG 17 V_HOXC6_01_M01406 TRANSFAC - 71550464 71550480 5.0E-06 CAGTGTAATTATTAATA 17 V_AFP1_Q6_M00616 TRANSFAC - 71550460 71550470 2.0E-06 ATTAATAGCAC 11 V_LYF1_01_M00141 TRANSFAC - 71553336 71553344 9.0E-06 TTTGGGAGG 9 V_LDSPOLYA_B_M00317 TRANSFAC + 71552369 71552384 5.0E-06 TGAGTGTCTTCTTTTC 16 V_NKX62_Q2_M00489 TRANSFAC + 71550466 71550477 8.0E-06 TTAATAATTACA 12 V_RHOX11_02_M01384 TRANSFAC + 71554365 71554381 2.0E-06 GAGTCGCTGTAAAACCT 17 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 71553302 71553316 1.0E-06 TGAGGTCAGGAGTGC 15 V_NFY_C_M00209 TRANSFAC - 71554249 71554262 6.0E-06 CCTGATCGGCTACT 14 V_RPC155_01_M01798 TRANSFAC - 71553296 71553311 2.0E-06 TCAGGAGTGCAAAACC 16 V_TST1_01_M00133 TRANSFAC + 71554482 71554496 6.0E-06 GATGATTTAGGATTG 15 V_ZNF219_01_M01122 TRANSFAC - 71553768 71553779 8.0E-06 CACCCCCACCCC 12 V_DBX2_01_M01360 TRANSFAC + 71550461 71550476 1.0E-05 TGCTATTAATAATTAC 16 V_POLY_C_M00212 TRANSFAC - 71554091 71554108 1.0E-06 AATTAAAATCTTTCCGTG 18 V_CREL_01_M00053 TRANSFAC - 71554240 71554249 6.0E-06 TGGAATTTCC 10 V_RSRFC4_Q2_M00407 TRANSFAC - 71550459 71550475 1.0E-06 TAATTATTAATAGCACC 17 V_RSRFC4_Q2_M00407 TRANSFAC + 71550460 71550476 3.0E-06 GTGCTATTAATAATTAC 17 V_HOXB6_01_M01460 TRANSFAC + 71550464 71550479 1.0E-06 TATTAATAATTACACT 16 V_IRF_Q6_M00772 TRANSFAC - 71553825 71553839 3.0E-06 CTTGTTTTCTCTTTT 15 V_STAT5A_02_M00460 TRANSFAC + 71553748 71553771 7.0E-06 TACCCAGAAATATGGTATTGGGGG 24 V_LXR_DR4_Q3_M00766 TRANSFAC + 71553309 71553324 6.0E-06 TGACCTCAAGTGATCC 16 V_HNF1_Q6_01_M01011 TRANSFAC + 71550461 71550481 8.0E-06 TGCTATTAATAATTACACTGG 21 V_TTF1_Q6_M00794 TRANSFAC + 71553311 71553322 7.0E-06 ACCTCAAGTGAT 12 V_MEF2_03_M00232 TRANSFAC + 71550456 71550477 2.0E-06 GGAGGTGCTATTAATAATTACA 22 V_MEF2_03_M00232 TRANSFAC - 71550458 71550479 3.0E-06 AGTGTAATTATTAATAGCACCT 22 V_ELF5_01_M01197 TRANSFAC - 71554067 71554077 0.0E+00 ATAAGGAAGTT 11 V_ELF5_01_M01197 TRANSFAC + 71554142 71554152 1.0E-06 AAAAGGAAGTT 11 V_ELF5_01_M01197 TRANSFAC + 71554236 71554246 1.0E-05 AAGAGGAAATT 11 V_YY1_Q6_02_M01035 TRANSFAC - 71554474 71554484 3.0E-06 ATCTCCATTTT 11 V_SOX12_04_M02900 TRANSFAC - 71553246 71553261 5.0E-06 ACAAATACAAAAAATT 16 V_NCX_02_M01420 TRANSFAC - 71550460 71550476 8.0E-06 GTAATTATTAATAGCAC 17 V_HB24_01_M01399 TRANSFAC + 71550463 71550477 6.0E-06 CTATTAATAATTACA 15 V_SP1_01_M00008 TRANSFAC - 71553233 71553242 1.0E-05 GGGGCGTGGT 10 V_CTCF_02_M01259 TRANSFAC - 71553949 71553968 1.0E-06 CGATGGCCAATAGAGGGCGC 20 V_CTCF_01_M01200 TRANSFAC - 71553947 71553966 0.0E+00 ATGGCCAATAGAGGGCGCTG 20 V_NKX63_01_M01470 TRANSFAC + 71550464 71550480 2.0E-06 TATTAATAATTACACTG 17 V_BLIMP1_Q6_M01066 TRANSFAC + 71550444 71550459 3.0E-06 ATGAGAGTGAAAGGAG 16 V_CETS1P54_03_M01078 TRANSFAC + 71554140 71554155 9.0E-06 TGAAAAGGAAGTTGGT 16 V_ELF1_Q6_M00746 TRANSFAC + 71554234 71554245 0.0E+00 GGAAGAGGAAAT 12 V_HOXA7_02_M01336 TRANSFAC - 71550464 71550480 6.0E-06 CAGTGTAATTATTAATA 17 V_TAL1_01_M01591 TRANSFAC - 71554138 71554150 2.0E-06 CTTCCTTTTCACT 13 V_HOXB8_01_M01451 TRANSFAC + 71550458 71550473 2.0E-06 AGGTGCTATTAATAAT 16 V_HOXB8_01_M01451 TRANSFAC - 71550465 71550480 2.0E-06 CAGTGTAATTATTAAT 16 V_HNF1_01_M00132 TRANSFAC + 71550464 71550478 2.0E-06 TATTAATAATTACAC 15 V_LUN1_01_M00480 TRANSFAC - 71553338 71553354 8.0E-06 TCCTAAGCACTTTGGGA 17 V_NKX61_02_M01469 TRANSFAC + 71550464 71550479 2.0E-06 TATTAATAATTACACT 16 V_RHOX11_05_M03099 TRANSFAC + 71554365 71554381 2.0E-06 GAGTCGCTGTAAAACCT 17 V_RSRFC4_01_M00026 TRANSFAC + 71550460 71550475 1.0E-06 GTGCTATTAATAATTA 16 V_RSRFC4_01_M00026 TRANSFAC - 71550460 71550475 2.0E-06 TAATTATTAATAGCAC 16 V_T3RBETA_Q6_01_M02119 TRANSFAC - 71553308 71553324 2.0E-06 GGATCACTTGAGGTCAG 17 V_ZFP281_01_M01597 TRANSFAC + 71553766 71553776 1.0E-06 TGGGGGTGGGG 11 V_IRF1_Q6_01_M01881 TRANSFAC - 71553824 71553837 2.0E-06 TGTTTTCTCTTTTC 14 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 71553304 71553318 1.0E-06 CTTGAGGTCAGGAGT 15 V_FOXJ2_01_M00422 TRANSFAC - 71553250 71553267 8.0E-06 TCTACTACAAATACAAAA 18 V_SATB1_01_M01232 TRANSFAC + 71550464 71550475 2.0E-06 TATTAATAATTA 12 V_HOXD8_01_M01432 TRANSFAC - 71550460 71550476 1.0E-06 GTAATTATTAATAGCAC 17 V_PAX4_02_M00377 TRANSFAC - 71553243 71553253 2.0E-06 AAAAAATTAGC 11 V_HOXD3_01_M01338 TRANSFAC + 71550464 71550479 5.0E-06 TATTAATAATTACACT 16 V_ARP1_01_M00155 TRANSFAC + 71553301 71553316 3.0E-06 TGCACTCCTGACCTCA 16 V_MEF2A_05_M01301 TRANSFAC + 71550461 71550472 5.0E-06 TGCTATTAATAA 12 V_GATA5_03_M02756 TRANSFAC + 71553810 71553826 5.0E-06 CAGCCTGATAAGCAGAA 17 V_ELF5_04_M02241 TRANSFAC + 71554067 71554075 9.0E-06 AACTTCCTT 9 V_ELF5_04_M02241 TRANSFAC - 71554144 71554152 9.0E-06 AACTTCCTT 9 V_BRN3C_01_M01408 TRANSFAC + 71550461 71550476 4.0E-06 TGCTATTAATAATTAC 16 V_AP2ALPHA_03_M01047 TRANSFAC + 71553731 71553745 3.0E-06 GCTGCCTGAGGCTGT 15 V_AP2ALPHA_03_M01047 TRANSFAC - 71553731 71553745 3.0E-06 ACAGCCTCAGGCAGC 15 V_HNF1A_01_M02162 TRANSFAC + 71550464 71550477 2.0E-06 TATTAATAATTACA 14 V_SOX5_04_M02910 TRANSFAC - 71550435 71550449 3.0E-06 TCTCATGATTAAGAT 15 V_RHOX11_06_M03100 TRANSFAC + 71554365 71554381 4.0E-06 GAGTCGCTGTAAAACCT 17 V_PAX4_04_M00380 TRANSFAC + 71550419 71550448 8.0E-06 AAAAAAAAAAATTATCATCTTAATCATGAG 30 V_PAX4_04_M00380 TRANSFAC + 71550422 71550451 6.0E-06 AAAAAAAATTATCATCTTAATCATGAGAGT 30 V_T3RALPHA_Q6_M01724 TRANSFAC - 71553308 71553318 1.0E-06 CTTGAGGTCAG 11 V_ER_Q6_M00191 TRANSFAC - 71553614 71553632 5.0E-06 ACAGGGCTCGGTGACCCGC 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.