Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

THSD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55901 thrombospondin, type I, domain containing 1 chr13 - 52980129 - 52985629 52980629 Transcription Factor Binding Sites   Download all TFBS in the THSD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXO4_forkhead_DBD_dimeric_14_1 SELEX + 52980689 52980702 8.0E-06 GTAAACTTGCTTTC 14 FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 52980689 52980702 5.0E-06 GAAAGCAAGTTTAC 14 PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 52985068 52985076 5.0E-06 CTTAATCCC 9 GCM2_GCM_DBD_monomeric_10_1 SELEX - 52980535 52980544 9.0E-06 GATGCGGGTG 10 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 52985116 52985133 1.0E-05 GAAATATTATAGTGATTA 18 SOX2_HMG_full_dimeric_17_1 SELEX + 52978811 52978827 1.0E-05 AGACAATTACAATGCTT 17 ESR2_MA0258.1 JASPAR + 52978831 52978848 1.0E-05 TTAAGTCACTGAGACCTG 18 SOX8_HMG_full_dimeric_15_1 SELEX + 52978812 52978826 5.0E-06 GACAATTACAATGCT 15 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 52985101 52985112 6.0E-06 ATAACTATTATA 12 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 52978803 52978811 7.0E-06 AGCACTTAA 9 PITX1_homeodomain_full_monomeric_8_1 SELEX + 52985069 52985076 1.0E-05 TTAATCCC 8 ESR1_MA0112.2 JASPAR - 52978833 52978852 5.0E-06 TTACCAGGTCTCAGTGACTT 20 SOX15_HMG_full_dimeric_15_1 SELEX + 52978812 52978826 8.0E-06 GACAATTACAATGCT 15 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 52985069 52985076 1.0E-05 TTAATCCC 8 GSC_homeodomain_full_monomeric_10_1 SELEX + 52985068 52985077 4.0E-06 CTTAATCCCT 10 GSC2_homeodomain_DBD_monomeric_10_1 SELEX + 52985068 52985077 7.0E-06 CTTAATCCCT 10 NR3C1_MA0113.1 JASPAR - 52978553 52978570 4.0E-06 AAGTACAGTATTTCCTTT 18 FOXO3_forkhead_full_dimeric_14_1 SELEX + 52980689 52980702 6.0E-06 GTAAACTTGCTTTC 14 IRF3_IRF_full_trimeric_21_1 SELEX + 52978572 52978592 7.0E-06 CTGAAAGGGAAACAGAGATTT 21 Sox3_HMG_DBD_dimeric_17_1 SELEX + 52978811 52978827 6.0E-06 AGACAATTACAATGCTT 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 52978811 52978827 9.0E-06 AAGCATTGTAATTGTCT 17 ELF5_MA0136.1 JASPAR - 52978554 52978562 2.0E-06 TATTTCCTT 9 V_MEQ_01_M02049 TRANSFAC + 52980529 52980537 7.0E-06 AACACACAC 9 V_E2A_Q6_01_M02088 TRANSFAC + 52980437 52980449 8.0E-06 CGCCAGCTGCTGG 13 V_IPF1_02_M01234 TRANSFAC - 52978519 52978528 6.0E-06 AGCTAATAAG 10 V_OBOX5_05_M03066 TRANSFAC - 52985064 52985080 8.0E-06 AGGAGGGATTAAGAAAT 17 V_OBOX1_01_M01450 TRANSFAC - 52985065 52985081 5.0E-06 AAGGAGGGATTAAGAAA 17 V_ESR1_01_M02261 TRANSFAC - 52978833 52978852 5.0E-06 TTACCAGGTCTCAGTGACTT 20 V_IRF_Q6_01_M00972 TRANSFAC + 52978574 52978584 1.0E-05 GAAAGGGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 52978572 52978587 5.0E-06 CTGAAAGGGAAACAGA 16 V_IRF3_05_M02767 TRANSFAC + 52978499 52978512 5.0E-06 TGGAAGGGAAACTG 14 V_HOXD13_01_M01404 TRANSFAC + 52979051 52979066 8.0E-06 AGACTTATAAAACAGA 16 V_SOX21_03_M02803 TRANSFAC + 52985101 52985116 8.0E-06 TATAATAGTTATTGTG 16 V_SOX21_03_M02803 TRANSFAC - 52985117 52985132 1.0E-05 AATCACTATAATATTT 16 V_NR3C1_01_M02219 TRANSFAC - 52978553 52978570 4.0E-06 AAGTACAGTATTTCCTTT 18 V_HBP1_Q2_M01661 TRANSFAC - 52978474 52978482 8.0E-06 TTCAATCAG 9 V_CEBPB_01_M00109 TRANSFAC - 52985062 52985075 1.0E-06 GGATTAAGAAATCT 14 V_CEBPB_01_M00109 TRANSFAC + 52985109 52985122 0.0E+00 TTATTGTGAAATAT 14 V_PAX5_02_M00144 TRANSFAC + 52978581 52978608 2.0E-06 AAACAGAGATTTGAAGTGTAACTATGCA 28 V_SOX7_03_M02807 TRANSFAC - 52985102 52985123 4.0E-06 AATATTTCACAATAACTATTAT 22 V_CRX_Q4_M00623 TRANSFAC + 52985066 52985078 8.0E-06 TTCTTAATCCCTC 13 V_OBOX5_02_M01480 TRANSFAC - 52985064 52985080 8.0E-06 AGGAGGGATTAAGAAAT 17 V_CEBPE_Q6_M01868 TRANSFAC - 52985111 52985124 6.0E-06 TAATATTTCACAAT 14 V_CART1_01_M00416 TRANSFAC - 52985119 52985136 6.0E-06 ACTTAATCACTATAATAT 18 V_GFI1_01_M00250 TRANSFAC - 52978576 52978599 1.0E-06 ACACTTCAAATCTCTGTTTCCCTT 24 V_GFI1_01_M00250 TRANSFAC + 52985045 52985068 7.0E-06 ACACTGCAAATCTGGGTAGATTTC 24 V_SOX1_04_M02906 TRANSFAC + 52985100 52985114 0.0E+00 ATATAATAGTTATTG 15 V_DOBOX4_01_M01359 TRANSFAC + 52984999 52985015 4.0E-06 TAAAAAGATACACTTTT 17 V_IRX4_01_M01410 TRANSFAC + 52984989 52985005 7.0E-06 TGCATACAAGTAAAAAG 17 V_IRF3_Q3_M01279 TRANSFAC - 52978501 52978513 9.0E-06 CCAGTTTCCCTTC 13 V_IRF3_Q3_M01279 TRANSFAC - 52978575 52978587 1.0E-06 TCTGTTTCCCTTT 13 V_IRF_Q6_M00772 TRANSFAC - 52978574 52978588 4.0E-06 CTCTGTTTCCCTTTC 15 V_OBOX2_01_M01364 TRANSFAC - 52985065 52985081 3.0E-06 AAGGAGGGATTAAGAAA 17 V_ISRE_01_M00258 TRANSFAC - 52978498 52978512 2.0E-06 CAGTTTCCCTTCCAT 15 V_ELF5_01_M01197 TRANSFAC - 52978566 52978576 6.0E-06 TTCAGGAAGTA 11 V_ZBRK1_01_M01105 TRANSFAC + 52978578 52978592 3.0E-06 GGGAAACAGAGATTT 15 V_ERALPHA_01_M01801 TRANSFAC + 52978833 52978847 2.0E-06 AAGTCACTGAGACCT 15 V_ERALPHA_01_M01801 TRANSFAC - 52978833 52978847 3.0E-06 AGGTCTCAGTGACTT 15 V_TCF7_03_M02817 TRANSFAC + 52978545 52978561 7.0E-06 TGCTGAACAAAGGAAAT 17 V_SOX11_03_M02795 TRANSFAC + 52978545 52978561 1.0E-06 TGCTGAACAAAGGAAAT 17 V_BLIMP1_Q6_M01066 TRANSFAC + 52978498 52978513 1.0E-06 ATGGAAGGGAAACTGG 16 V_IRX3_02_M01485 TRANSFAC + 52984989 52985005 7.0E-06 TGCATACAAGTAAAAAG 17 V_OBOX2_02_M03064 TRANSFAC - 52985065 52985081 3.0E-06 AAGGAGGGATTAAGAAA 17 V_AP1FJ_Q2_M00172 TRANSFAC - 52978830 52978840 4.0E-06 AGTGACTTAAA 11 V_EBNA1_01_M01745 TRANSFAC - 52980405 52980420 2.0E-06 GAAAGGATGCGCTGCC 16 V_PITX1_01_M01484 TRANSFAC - 52985065 52985081 2.0E-06 AAGGAGGGATTAAGAAA 17 V_DOBOX5_01_M01463 TRANSFAC - 52985064 52985080 1.0E-06 AGGAGGGATTAAGAAAT 17 V_VDR_Q6_M00961 TRANSFAC - 52977522 52977533 1.0E-06 CTGTGTGAACCA 12 V_OTX2_01_M01387 TRANSFAC - 52985064 52985080 3.0E-06 AGGAGGGATTAAGAAAT 17 V_FOX_Q2_M00809 TRANSFAC - 52985095 52985107 7.0E-06 TATTATATGCTTT 13 V_PBX1_02_M00124 TRANSFAC + 52979075 52979089 5.0E-06 CTTGTCAATCATAAT 15 V_CEBPB_Q6_M01896 TRANSFAC + 52985112 52985121 4.0E-06 TTGTGAAATA 10 V_OCT1_07_M00248 TRANSFAC - 52978815 52978826 8.0E-06 AGCATTGTAATT 12 V_SOX4_01_M01308 TRANSFAC + 52978550 52978557 1.0E-05 AACAAAGG 8 V_PITX2_01_M01447 TRANSFAC - 52985064 52985080 1.0E-06 AGGAGGGATTAAGAAAT 17 V_ELF5_04_M02241 TRANSFAC - 52978554 52978562 2.0E-06 TATTTCCTT 9 V_CEBP_Q2_01_M00912 TRANSFAC - 52985109 52985120 3.0E-06 ATTTCACAATAA 12 V_OBOX5_01_M01381 TRANSFAC - 52985064 52985080 3.0E-06 AGGAGGGATTAAGAAAT 17 V_OBOX3_02_M03065 TRANSFAC - 52985065 52985081 2.0E-06 AAGGAGGGATTAAGAAA 17 V_CDPCR3_01_M00105 TRANSFAC - 52977485 52977499 2.0E-06 CAGCAACAAGTATTG 15 V_DEC_Q1_M00997 TRANSFAC - 52978783 52978795 2.0E-06 GCCCAAGTGATGT 13 V_OTX1_01_M01366 TRANSFAC - 52985064 52985080 1.0E-06 AGGAGGGATTAAGAAAT 17 V_CEBPG_Q6_01_M01869 TRANSFAC - 52985063 52985074 5.0E-06 GATTAAGAAATC 12 V_OBOX6_06_M03067 TRANSFAC + 52985064 52985080 3.0E-06 ATTTCTTAATCCCTCCT 17 V_OBOX3_01_M01466 TRANSFAC - 52985065 52985081 2.0E-06 AAGGAGGGATTAAGAAA 17 V_SMAD1_01_M01590 TRANSFAC + 52978547 52978558 5.0E-06 CTGAACAAAGGA 12 V_SOX9_Q4_M01284 TRANSFAC + 52978549 52978559 1.0E-06 GAACAAAGGAA 11 V_ESR2_01_M02377 TRANSFAC + 52978831 52978848 1.0E-05 TTAAGTCACTGAGACCTG 18 V_SPI1_02_M02043 TRANSFAC + 52978553 52978562 8.0E-06 AAAGGAAATA 10 V_CEBPA_Q6_M01866 TRANSFAC + 52985109 52985121 9.0E-06 TTATTGTGAAATA 13 V_NANOG_02_M01247 TRANSFAC + 52978543 52978562 2.0E-06 GCTGCTGAACAAAGGAAATA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.