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RAVER2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55225 ribonucleoprotein, PTB-binding 2 chr1 + 65205777 - 65211277 65210777 Transcription Factor Binding Sites   Download all TFBS in the RAVER2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 65212220 65212233 7.0E-06 TTATAAAATAATGA 14 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 65210287 65210298 4.0E-06 GGTCTTCCCACA 12 EWSR1-FLI1_MA0149.1 JASPAR - 65210255 65210272 6.0E-06 GGAGGGGTGGCAGGAGGG 18 BARX1_homeodomain_DBD_monomeric_8_1 SELEX + 65209772 65209779 5.0E-06 ACAATTAA 8 Tp73_p53l_DBD_dimeric_18_1 SELEX - 65212057 65212074 4.0E-06 AACATGTGTGAACATCCA 18 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 65211778 65211793 1.0E-05 TAATCTGGATTAAATA 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 65211778 65211793 9.0E-06 TAATCTGGATTAAATA 16 YY2_C2H2_full_monomeric_11_1 SELEX - 65210853 65210863 4.0E-06 GCCGCCATCTT 11 Foxd3_MA0041.1 JASPAR + 65209833 65209844 6.0E-06 GATTGTTTGATC 12 MYBL1_MYB_DBD_dimeric_12_1 SELEX - 65211787 65211798 6.0E-06 ACAGTTAATCTG 12 PITX1_homeodomain_full_monomeric_9_1 SELEX + 65211780 65211788 5.0E-06 TTTAATCCA 9 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 65212219 65212228 1.0E-05 CTTATAAAAT 10 SPDEF_ETS_full_monomeric_11_1 SELEX + 65212154 65212164 4.0E-06 AACCGGATGCA 11 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 65212220 65212233 9.0E-06 TTATAAAATAATGA 14 NFIA_NFI_full_monomeric_10_1 SELEX + 65210185 65210194 5.0E-06 TTTGCCAAAT 10 V_AP2ALPHA_Q6_M01857 TRANSFAC + 65210313 65210323 9.0E-06 AGCCCCCGGGC 11 V_HNF3B_01_M00131 TRANSFAC + 65209831 65209845 7.0E-06 TGGATTGTTTGATCT 15 V_CEBP_Q3_M00770 TRANSFAC - 65210185 65210196 1.0E-06 ATATTTGGCAAA 12 V_FOXD3_01_M00130 TRANSFAC + 65209833 65209844 4.0E-06 GATTGTTTGATC 12 V_TBR2_01_M01774 TRANSFAC - 65212063 65212071 8.0E-06 ATGTGTGAA 9 V_HOXD13_01_M01404 TRANSFAC + 65212216 65212231 2.0E-06 TGACTTATAAAATAAT 16 V_SOX21_03_M02803 TRANSFAC - 65212220 65212235 8.0E-06 TCTCATTATTTTATAA 16 V_CEBPB_01_M00109 TRANSFAC - 65210183 65210196 9.0E-06 ATATTTGGCAAAGT 14 V_SOX13_03_M02797 TRANSFAC - 65207016 65207031 1.0E-05 TGAAGTACAATTATCA 16 V_PR_01_M00954 TRANSFAC + 65211719 65211745 4.0E-06 CAGTACTGGAGGGTTTGTTCTCAGTGA 27 V_HOXB13_01_M01467 TRANSFAC + 65212216 65212231 6.0E-06 TGACTTATAAAATAAT 16 V_SPDEF_03_M02811 TRANSFAC - 65212150 65212165 8.0E-06 ATGCATCCGGTTACAG 16 V_AMEF2_Q6_M00403 TRANSFAC + 65211754 65211771 5.0E-06 AGGTTTAAAGATAGCTAC 18 V_NKX25_02_M00241 TRANSFAC - 65209773 65209780 7.0E-06 CTTAATTG 8 V_SOX18_03_M02801 TRANSFAC - 65212220 65212235 6.0E-06 TCTCATTATTTTATAA 16 V_YY1_Q6_02_M01035 TRANSFAC - 65210853 65210863 7.0E-06 GCCGCCATCTT 11 V_PAX6_Q2_M00979 TRANSFAC + 65212118 65212131 8.0E-06 CTGTCCTGGTAGTT 14 V_REX1_03_M01744 TRANSFAC + 65210853 65210864 1.0E-06 AAGATGGCGGCG 12 V_GR_01_M00955 TRANSFAC + 65211719 65211745 9.0E-06 CAGTACTGGAGGGTTTGTTCTCAGTGA 27 V_TCF1_07_M02919 TRANSFAC - 65211780 65211793 1.0E-06 TAATCTGGATTAAA 14 V_HBP1_04_M02866 TRANSFAC + 65210163 65210179 0.0E+00 AAATCTCATTGTAAACT 17 V_TBP_01_M00471 TRANSFAC - 65212089 65212096 8.0E-06 TATAAATT 8 V_PDEF_01_M02040 TRANSFAC + 65212155 65212164 7.0E-06 ACCGGATGCA 10 V_FPM315_01_M01587 TRANSFAC - 65210710 65210721 4.0E-06 GTGGGAGGAGGG 12 V_PBX1_03_M01017 TRANSFAC - 65209834 65209845 7.0E-06 AGATCAAACAAT 12 V_MEF3_B_M00319 TRANSFAC + 65210651 65210663 2.0E-06 GCCTCAGGTTTCC 13 V_EWSR1FLI1_01_M02252 TRANSFAC - 65210255 65210272 6.0E-06 GGAGGGGTGGCAGGAGGG 18 V_SOX18_04_M02905 TRANSFAC + 65212083 65212098 2.0E-06 AACCTGAATTTATATA 16 V_UF1H3BETA_Q6_M01068 TRANSFAC + 65210912 65210925 4.0E-06 GGCGGGGCTGGGGC 14 V_MAFK_04_M02880 TRANSFAC + 65212163 65212177 4.0E-06 CATGAAATTGCAAGA 15 V_OBOX5_01_M01381 TRANSFAC - 65211776 65211792 5.0E-06 AATCTGGATTAAATACA 17 V_RNF96_01_M01199 TRANSFAC + 65210307 65210316 7.0E-06 GCCCGCAGCC 10 V_BRCA_01_M01082 TRANSFAC - 65210210 65210217 1.0E-05 TTCTGTTG 8 V_OBOX6_06_M03067 TRANSFAC + 65211776 65211792 5.0E-06 TGTATTTAATCCAGATT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.