Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FANCI Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55215 Fanconi anemia, complementation group I chr15 + 89782193 - 89787693 89787193 Transcription Factor Binding Sites   Download all TFBS in the FANCI promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HSF2_HSF_DBD_trimeric_13_1 SELEX + 89790819 89790831 0.0E+00 TTCTGGAATCTTC 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 89788213 89788225 1.0E-06 ATAAACAAAACCA 13 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 89788213 89788220 5.0E-06 ATAAACAA 8 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 89790811 89790818 5.0E-06 ATAAACAA 8 FOXF2_MA0030.1 JASPAR + 89788208 89788221 1.0E-06 CAATGATAAACAAA 14 FOXF2_MA0030.1 JASPAR - 89790810 89790823 8.0E-06 CAGAAATAAACAAA 14 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 89790992 89791002 9.0E-06 AGTAAATGTCA 11 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 89788203 89788219 1.0E-06 AGATACAATGATAAACA 17 HSF1_HSF_full_trimeric_13_1 SELEX + 89787376 89787388 9.0E-06 TTCTGGTATTTTC 13 HSF1_HSF_full_trimeric_13_1 SELEX + 89790819 89790831 0.0E+00 TTCTGGAATCTTC 13 ELF4_ETS_full_monomeric_12_1 SELEX + 89787638 89787649 6.0E-06 AACCCGGAAGGG 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 89786697 89786709 9.0E-06 ATTTAACAAATAT 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 89790807 89790819 4.0E-06 AATAAACAAACTT 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 89790811 89790823 8.0E-06 CAGAAATAAACAA 13 ZNF435_C2H2_full_dimeric_18_1 SELEX - 89786689 89786706 4.0E-06 TTTGTTAAATGAACAACT 18 ZNF435_C2H2_full_dimeric_18_1 SELEX + 89787624 89787641 6.0E-06 CTTGTTAACTGAAGAACC 18 SOX7_HMG_full_dimeric_17_2 SELEX + 89790992 89791008 6.0E-06 AGTAAATGTCAGGCATG 17 Pax4_MA0068.1 JASPAR + 89786786 89786815 7.0E-06 AAACAAAAACCACAACTCCCAAAAGTCCAT 30 RUNX3_RUNX_full_monomeric_10_1 SELEX + 89786792 89786801 7.0E-06 AAACCACAAC 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 89786792 89786800 8.0E-06 AAACCACAA 9 Foxq1_MA0040.1 JASPAR + 89790809 89790819 8.0E-06 GTTTGTTTATT 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 89790812 89790822 4.0E-06 AGAAATAAACA 11 ELF3_ETS_full_monomeric_13_1 SELEX + 89787638 89787650 9.0E-06 AACCCGGAAGGGA 13 HSF4_HSF_DBD_trimeric_13_1 SELEX + 89787376 89787388 4.0E-06 TTCTGGTATTTTC 13 HSF4_HSF_DBD_trimeric_13_1 SELEX + 89790819 89790831 0.0E+00 TTCTGGAATCTTC 13 FOXI1_MA0042.1 JASPAR + 89790809 89790820 0.0E+00 GTTTGTTTATTT 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 89790808 89790818 4.0E-06 ATAAACAAACT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 89790812 89790822 8.0E-06 AGAAATAAACA 11 TBX15_TBX_DBD_dimeric_19_1 SELEX - 89786689 89786707 9.0E-06 ATTTGTTAAATGAACAACT 19 Foxd3_MA0041.1 JASPAR - 89786782 89786793 5.0E-06 TTTTGTTTGTTC 12 Foxd3_MA0041.1 JASPAR + 89790809 89790820 0.0E+00 GTTTGTTTATTT 12 ELF1_ETS_full_monomeric_12_1 SELEX + 89787638 89787649 2.0E-06 AACCCGGAAGGG 12 Tp53_p53l_DBD_dimeric_17_1 SELEX + 89791014 89791030 4.0E-06 ACATTCAAAGGACATGT 17 Tp53_p53l_DBD_dimeric_17_1 SELEX - 89791014 89791030 9.0E-06 ACATGTCCTTTGAATGT 17 ETV6_ETS_full_monomeric_10_1 SELEX + 89787169 89787178 9.0E-06 GGCGGAAGTG 10 RUNX1_MA0002.2 JASPAR - 89786792 89786802 8.0E-06 AGTTGTGGTTT 11 IRF3_IRF_full_trimeric_21_1 SELEX + 89790788 89790808 6.0E-06 CAGGGAAGGAAAACAAATCAA 21 ETV6_ETS_full_dimeric_15_1 SELEX + 89787205 89787219 7.0E-06 CGGGTAACGGAAGTG 15 Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 89788213 89788220 5.0E-06 ATAAACAA 8 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 89790811 89790818 5.0E-06 ATAAACAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 89786782 89786794 6.0E-06 GAACAAACAAAAA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 89790808 89790820 0.0E+00 AAATAAACAAACT 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 89787603 89787615 1.0E-05 GCAAATACAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 89788213 89788225 1.0E-06 ATAAACAAAACCA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 89786912 89786921 9.0E-06 AGTGCCAAGA 10 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 89786784 89786797 3.0E-06 ACAAACAAAAACCA 14 V_FOXP1_01_M00987 TRANSFAC - 89786765 89786784 0.0E+00 TTCTCTGTTTTGTTTTGTTT 20 V_FOXP1_01_M00987 TRANSFAC + 89790811 89790830 1.0E-05 TTGTTTATTTCTGGAATCTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 89786694 89786706 1.0E-06 TTCATTTAACAAA 13 V_STAT5A_Q6_M01890 TRANSFAC + 89787520 89787532 5.0E-06 TTACTTCTGAGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 89787524 89787536 0.0E+00 AAATTTCTCAGAA 13 V_FREAC7_01_M00293 TRANSFAC - 89790808 89790823 8.0E-06 CAGAAATAAACAAACT 16 V_TCF3_01_M01594 TRANSFAC - 89786766 89786778 1.0E-06 GTTTTGTTTTGTT 13 V_ATF_01_M00017 TRANSFAC + 89790838 89790851 1.0E-06 CTCTGACGTTTTTC 14 V_GATA2_02_M00348 TRANSFAC - 89790892 89790901 5.0E-06 AGAGATAAAA 10 V_FOXA2_04_M02749 TRANSFAC + 89788208 89788224 7.0E-06 CAATGATAAACAAAACC 17 V_FOXA2_04_M02749 TRANSFAC - 89790807 89790823 3.0E-06 CAGAAATAAACAAACTT 17 V_HNF1_02_M01379 TRANSFAC - 89790777 89790793 6.0E-06 TCCCTGTTAACTGAATA 17 V_SOX30_03_M02804 TRANSFAC + 89790871 89790886 4.0E-06 GAGCAACAATGGACCA 16 V_HMGIY_Q3_M01010 TRANSFAC - 89787527 89787541 8.0E-06 AAGGGAAATTTCTCA 15 V_FOXD3_01_M00130 TRANSFAC - 89786782 89786793 4.0E-06 TTTTGTTTGTTC 12 V_FOXD3_01_M00130 TRANSFAC + 89790809 89790820 0.0E+00 GTTTGTTTATTT 12 V_BCL6_01_M01183 TRANSFAC - 89786764 89786779 6.0E-06 TGTTTTGTTTTGTTTT 16 V_AML3_Q6_M01856 TRANSFAC + 89786793 89786800 1.0E-05 AACCACAA 8 V_FOXO4_02_M00476 TRANSFAC - 89788210 89788223 4.0E-06 GTTTTGTTTATCAT 14 V_FOXO4_02_M00476 TRANSFAC - 89790793 89790806 4.0E-06 GATTTGTTTTCCTT 14 V_FOXO4_02_M00476 TRANSFAC + 89790808 89790821 7.0E-06 AGTTTGTTTATTTC 14 V_SATB1_Q3_M01723 TRANSFAC - 89786807 89786822 5.0E-06 GGTCTTAATGGACTTT 16 V_OCT1_Q5_01_M00930 TRANSFAC + 89787547 89787557 7.0E-06 TGCTTTGCATT 11 V_ISL2_01_M01328 TRANSFAC + 89786806 89786821 5.0E-06 AAAAGTCCATTAAGAC 16 V_SRY_02_M00160 TRANSFAC + 89786763 89786774 8.0E-06 CAAAACAAAACA 12 V_SRY_02_M00160 TRANSFAC + 89786768 89786779 8.0E-06 CAAAACAAAACA 12 V_HNF4_Q6_M00967 TRANSFAC + 89786807 89786815 7.0E-06 AAAGTCCAT 9 V_CEBP_01_M00159 TRANSFAC - 89786696 89786708 7.0E-06 TATTTGTTAAATG 13 V_FOXO3A_Q1_M01137 TRANSFAC - 89790808 89790819 6.0E-06 AATAAACAAACT 12 V_HNF3_Q6_01_M01012 TRANSFAC - 89786767 89786784 9.0E-06 TTCTCTGTTTTGTTTTGT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 89786778 89786795 3.0E-06 GTTTTTGTTTGTTCTCTG 18 V_STAT5B_01_M00459 TRANSFAC + 89787521 89787535 8.0E-06 TACTTCTGAGAAATT 15 V_STAT5B_01_M00459 TRANSFAC - 89787521 89787535 3.0E-06 AATTTCTCAGAAGTA 15 V_FOXJ1_03_M02750 TRANSFAC + 89788210 89788225 1.0E-06 ATGATAAACAAAACCA 16 V_FOXJ1_03_M02750 TRANSFAC - 89790806 89790821 1.0E-06 GAAATAAACAAACTTG 16 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 89787530 89787541 6.0E-06 GAAATTTCCCTT 12 V_HFH4_01_M00742 TRANSFAC - 89786699 89786711 7.0E-06 GAATATTTGTTAA 13 V_HFH4_01_M00742 TRANSFAC - 89790797 89790809 8.0E-06 CTTGATTTGTTTT 13 V_OCT_C_M00210 TRANSFAC + 89787546 89787558 7.0E-06 TTGCTTTGCATTT 13 V_PU1_Q4_M01172 TRANSFAC - 89790695 89790713 7.0E-06 TTTTTCTTCTTCTTCTTAA 19 V_PU1_Q4_M01172 TRANSFAC - 89790698 89790716 1.0E-06 TCTTTTTTCTTCTTCTTCT 19 V_PU1_Q4_M01172 TRANSFAC - 89790701 89790719 7.0E-06 GATTCTTTTTTCTTCTTCT 19 V_FOXP3_01_M01599 TRANSFAC + 89788213 89788220 5.0E-06 ATAAACAA 8 V_FOXP3_01_M01599 TRANSFAC - 89790811 89790818 5.0E-06 ATAAACAA 8 V_STAT4_Q4_M01666 TRANSFAC - 89787519 89787532 8.0E-06 TTCTCAGAAGTAAG 14 V_HNF1_C_M00206 TRANSFAC + 89786689 89786705 1.0E-06 AGTTGTTCATTTAACAA 17 V_PR_01_M00954 TRANSFAC - 89786775 89786801 9.0E-06 GTTGTGGTTTTTGTTTGTTCTCTGTTT 27 V_ZFP105_03_M02827 TRANSFAC + 89786783 89786797 1.0E-06 AACAAACAAAAACCA 15 V_FOXO1_02_M00474 TRANSFAC - 89790793 89790806 7.0E-06 GATTTGTTTTCCTT 14 V_HNF3G_Q4_M02015 TRANSFAC - 89786783 89786790 7.0E-06 TGTTTGTT 8 V_RUNX1_01_M02257 TRANSFAC - 89786792 89786802 8.0E-06 AGTTGTGGTTT 11 V_NKX31_02_M02782 TRANSFAC + 89790717 89790733 1.0E-06 ATCAGCTACTTAAAGAT 17 V_NKX26_01_M01322 TRANSFAC + 89790718 89790733 8.0E-06 TCAGCTACTTAAAGAT 16 V_AML2_01_M01759 TRANSFAC + 89786793 89786800 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 89787180 89787193 9.0E-06 TCCGCCCCCGCGGC 14 V_IRF4_04_M02872 TRANSFAC + 89787682 89787696 6.0E-06 GCCATTCTCGGATCT 15 V_HOXA3_07_M02869 TRANSFAC + 89786807 89786820 3.0E-06 AAAGTCCATTAAGA 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 89786698 89786708 8.0E-06 TATTTGTTAAA 11 V_EGR1_Q6_M01873 TRANSFAC + 89787183 89787192 4.0E-06 GCGGGGGCGG 10 V_PAX2_01_M00098 TRANSFAC + 89790995 89791013 5.0E-06 AAATGTCAGGCATGATGAC 19 V_ERR1_Q3_M01841 TRANSFAC - 89791016 89791030 3.0E-06 ACATGTCCTTTGAAT 15 V_OCAB_Q6_M02113 TRANSFAC - 89787548 89787558 4.0E-06 AAATGCAAAGC 11 V_HFH1_01_M00129 TRANSFAC + 89790809 89790820 1.0E-06 GTTTGTTTATTT 12 V_STAT4_Q5_M02117 TRANSFAC + 89787524 89787533 5.0E-06 TTCTGAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC - 89787534 89787543 1.0E-05 TTAAGGGAAA 10 V_STAF_02_M00264 TRANSFAC + 89786799 89786819 5.0E-06 AACTCCCAAAAGTCCATTAAG 21 V_AP1_01_M00517 TRANSFAC - 89791007 89791019 9.0E-06 GAATGTGTCATCA 13 V_ISGF4G_04_M02875 TRANSFAC + 89786762 89786775 3.0E-06 GCAAAACAAAACAA 14 V_HNF4A_02_M02868 TRANSFAC + 89786803 89786818 2.0E-06 CCCAAAAGTCCATTAA 16 V_FOXO1_Q5_M01216 TRANSFAC + 89786763 89786771 8.0E-06 CAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC + 89786768 89786776 8.0E-06 CAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC + 89788213 89788221 2.0E-06 ATAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC + 89790796 89790804 5.0E-06 GAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC - 89790810 89790818 2.0E-06 ATAAACAAA 9 V_NKX32_02_M01482 TRANSFAC + 89790717 89790733 7.0E-06 ATCAGCTACTTAAAGAT 17 V_FREAC2_01_M00290 TRANSFAC + 89788208 89788223 0.0E+00 CAATGATAAACAAAAC 16 V_FREAC2_01_M00290 TRANSFAC - 89790808 89790823 7.0E-06 CAGAAATAAACAAACT 16 V_HFH8_01_M00294 TRANSFAC + 89790809 89790821 3.0E-06 GTTTGTTTATTTC 13 V_MTF1_06_M02882 TRANSFAC - 89787600 89787613 1.0E-05 AAATACAAAAACTA 14 V_MTF1_06_M02882 TRANSFAC + 89790702 89790715 9.0E-06 GAAGAAGAAAAAAG 14 V_FAC1_01_M00456 TRANSFAC + 89786765 89786778 9.0E-06 AAACAAAACAAAAC 14 V_OSR2_04_M02889 TRANSFAC + 89790717 89790732 1.0E-06 ATCAGCTACTTAAAGA 16 V_PDEF_01_M02040 TRANSFAC - 89787901 89787910 7.0E-06 ACCGGATGCA 10 V_FOXL1_02_M02857 TRANSFAC + 89786759 89786774 1.0E-06 AGCGCAAAACAAAACA 16 V_FOXL1_02_M02857 TRANSFAC + 89786764 89786779 0.0E+00 AAAACAAAACAAAACA 16 V_FOXL1_02_M02857 TRANSFAC + 89786769 89786784 6.0E-06 AAAACAAAACAGAGAA 16 V_OCT1_Q6_M00195 TRANSFAC - 89787546 89787560 8.0E-06 ACAAATGCAAAGCAA 15 V_FOXL1_04_M02753 TRANSFAC + 89788208 89788224 3.0E-06 CAATGATAAACAAAACC 17 V_FOXL1_04_M02753 TRANSFAC - 89790807 89790823 3.0E-06 CAGAAATAAACAAACTT 17 V_FOXJ3_06_M02855 TRANSFAC + 89786763 89786779 0.0E+00 CAAAACAAAACAAAACA 17 V_FOXJ3_06_M02855 TRANSFAC + 89786768 89786784 2.0E-06 CAAAACAAAACAGAGAA 17 V_GATA3_02_M00350 TRANSFAC - 89790892 89790901 2.0E-06 AGAGATAAAA 10 V_TCF1_06_M02815 TRANSFAC - 89790777 89790793 7.0E-06 TCCCTGTTAACTGAATA 17 V_HNF1B_01_M01425 TRANSFAC - 89787620 89787636 9.0E-06 TTCAGTTAACAAGCCGT 17 V_FOXO3_01_M00477 TRANSFAC - 89790793 89790806 1.0E-05 GATTTGTTTTCCTT 14 V_FOXO3_01_M00477 TRANSFAC + 89790808 89790821 6.0E-06 AGTTTGTTTATTTC 14 V_TCF4_Q5_M00671 TRANSFAC - 89791017 89791024 1.0E-05 CCTTTGAA 8 V_MYB_Q3_M00773 TRANSFAC + 89786683 89786693 2.0E-06 ACTGTCAGTTG 11 V_STAT1STAT1_Q3_M01212 TRANSFAC - 89787522 89787534 7.0E-06 ATTTCTCAGAAGT 13 V_FOX_Q2_M00809 TRANSFAC - 89786699 89786711 2.0E-06 GAATATTTGTTAA 13 V_BBX_03_M02739 TRANSFAC + 89786691 89786705 3.0E-06 TTGTTCATTTAACAA 15 V_BBX_03_M02739 TRANSFAC - 89786691 89786705 2.0E-06 TTGTTAAATGAACAA 15 V_OSR1_04_M02888 TRANSFAC + 89790717 89790732 1.0E-06 ATCAGCTACTTAAAGA 16 V_STAT5A_01_M00457 TRANSFAC + 89787521 89787535 2.0E-06 TACTTCTGAGAAATT 15 V_STAT5A_01_M00457 TRANSFAC - 89787521 89787535 4.0E-06 AATTTCTCAGAAGTA 15 V_GATA2_03_M00349 TRANSFAC - 89790892 89790901 3.0E-06 AGAGATAAAA 10 V_SRF_06_M02916 TRANSFAC + 89791029 89791045 3.0E-06 GTGAGAAAGAAAAATTA 17 V_HFH3_01_M00289 TRANSFAC - 89786699 89786711 9.0E-06 GAATATTTGTTAA 13 V_HFH3_01_M00289 TRANSFAC + 89790809 89790821 5.0E-06 GTTTGTTTATTTC 13 V_HSF2_02_M01244 TRANSFAC - 89787376 89787388 8.0E-06 GAAAATACCAGAA 13 V_HSF2_02_M01244 TRANSFAC - 89790819 89790831 0.0E+00 GAAGATTCCAGAA 13 V_FOXJ2_01_M00422 TRANSFAC - 89790807 89790824 3.0E-06 CCAGAAATAAACAAACTT 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 89786792 89786799 1.0E-05 TGTGGTTT 8 V_FOXO1_01_M00473 TRANSFAC + 89788212 89788221 7.0E-06 GATAAACAAA 10 V_FOXO1_01_M00473 TRANSFAC - 89790810 89790819 0.0E+00 AATAAACAAA 10 V_SOX2_Q6_M01272 TRANSFAC - 89786762 89786777 1.0E-05 TTTTGTTTTGTTTTGC 16 V_PR_02_M00957 TRANSFAC - 89786775 89786801 9.0E-06 GTTGTGGTTTTTGTTTGTTCTCTGTTT 27 V_HNF3B_Q6_M02014 TRANSFAC - 89786783 89786791 1.0E-05 TTGTTTGTT 9 V_HNF3B_Q6_M02014 TRANSFAC + 89790811 89790819 6.0E-06 TTGTTTATT 9 V_FOXO4_01_M00472 TRANSFAC + 89788213 89788223 2.0E-06 ATAAACAAAAC 11 V_FOXO4_01_M00472 TRANSFAC - 89790808 89790818 1.0E-06 ATAAACAAACT 11 V_TAACC_B_M00331 TRANSFAC + 89790912 89790934 6.0E-06 AAAACAGCAGACAAACTGCAAGA 23 V_FOXK1_03_M02752 TRANSFAC + 89788208 89788224 1.0E-06 CAATGATAAACAAAACC 17 V_FOXK1_03_M02752 TRANSFAC - 89790807 89790823 2.0E-06 CAGAAATAAACAAACTT 17 V_PAX4_04_M00380 TRANSFAC + 89786772 89786801 7.0E-06 ACAAAACAGAGAACAAACAAAAACCACAAC 30 V_PAX4_04_M00380 TRANSFAC - 89787509 89787538 5.0E-06 GGAAATTTCTCAGAAGTAAGAGCTCACCCT 30 V_SMAD1_01_M01590 TRANSFAC + 89786763 89786774 6.0E-06 CAAAACAAAACA 12 V_SMAD1_01_M01590 TRANSFAC + 89786768 89786779 6.0E-06 CAAAACAAAACA 12 V_SMAD1_01_M01590 TRANSFAC + 89790703 89790714 7.0E-06 AAGAAGAAAAAA 12 V_SOX9_Q4_M01284 TRANSFAC + 89791016 89791026 8.0E-06 ATTCAAAGGAC 11 V_ETV3_02_M02068 TRANSFAC + 89787210 89787219 9.0E-06 AACGGAAGTG 10 V_NANOG_02_M01247 TRANSFAC + 89786764 89786783 1.0E-06 AAAACAAAACAAAACAGAGA 20 V_NANOG_02_M01247 TRANSFAC + 89788209 89788228 5.0E-06 AATGATAAACAAAACCAGCT 20 V_NANOG_02_M01247 TRANSFAC + 89790699 89790718 3.0E-06 GAAGAAGAAGAAAAAAGAAT 20 V_GATA1_06_M00347 TRANSFAC - 89790892 89790901 8.0E-06 AGAGATAAAA 10 V_NKX21_01_M01312 TRANSFAC + 89790718 89790733 7.0E-06 TCAGCTACTTAAAGAT 16 V_HSF1_Q6_01_M02017 TRANSFAC - 89790818 89790831 6.0E-06 GAAGATTCCAGAAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.