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PRPF39 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55015 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) chr14 + 45548301 - 45553801 45553301 Transcription Factor Binding Sites   Download all TFBS in the PRPF39 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NF-kappaB_MA0061.1 JASPAR - 45553130 45553139 6.0E-06 GGGACTTCCC 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 45553208 45553218 1.0E-05 GCCCCGCCCCC 11 ZNF435_C2H2_full_dimeric_18_1 SELEX - 45554493 45554510 9.0E-06 CTCTTTAACAGAACTCCT 18 EWSR1-FLI1_MA0149.1 JASPAR + 45553144 45553161 4.0E-06 GAGGGAAAGGCAGGTAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 45553603 45553620 5.0E-06 GGGAAGGAGAAAGGAATG 18 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 45553277 45553294 4.0E-06 GAGGCGAAAAAGTCACGT 18 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 45553619 45553631 5.0E-06 ACCCAACAGGTGG 13 Pax4_MA0068.1 JASPAR - 45553626 45553655 1.0E-06 GAAAAAAATACCTTGCACCGCTCCACCCAA 30 E2F7_E2F_DBD_dimeric_14_1 SELEX + 45553026 45553039 5.0E-06 ATTTGCCCCCAAAA 14 Foxq1_MA0040.1 JASPAR - 45554254 45554264 5.0E-06 CAAAGTTTATT 11 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 45553280 45553293 8.0E-06 AGGCGAAAAAGTCA 14 SP1_MA0079.2 JASPAR - 45553208 45553217 7.0E-06 CCCCGCCCCC 10 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 45550409 45550420 8.0E-06 GTGGACACAAAG 12 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 45554446 45554459 1.0E-06 GTGGAAAGTTCCAA 14 SOX7_HMG_full_dimeric_17_1 SELEX + 45553002 45553018 9.0E-06 GAACAATTGTAGGGAAA 17 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 45554527 45554541 1.0E-05 TACTTCAAAGTTCAC 15 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 45553617 45553631 6.0E-06 ACCCAACAGGTGGGA 15 PRDM4_C2H2_full_monomeric_13_1 SELEX - 45553465 45553477 2.0E-06 TTTCAAGGAGCCC 13 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 45554235 45554247 6.0E-06 CTGATTTAATCTG 13 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 45552836 45552851 4.0E-06 AAAGAAAAAAGTATTT 16 NRF1_NRF_full_dimeric_12_1 SELEX - 45553305 45553316 2.0E-06 TGCGCATGCGTC 12 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 45553425 45553442 2.0E-06 ATGCCACTTGATGCCATG 18 E2F3_E2F_DBD_dimeric_18_3 SELEX + 45553024 45553041 6.0E-06 AGATTTGCCCCCAAAAAT 18 E2F3_E2F_DBD_dimeric_18_3 SELEX - 45553024 45553041 9.0E-06 ATTTTTGGGGGCAAATCT 18 Zfx_MA0146.1 JASPAR + 45553540 45553553 9.0E-06 CTGGCCGCGGCCTC 14 V_HOXA9_01_M01351 TRANSFAC - 45554411 45554427 5.0E-06 GAGGTTATAAATCTAGA 17 V_CEBPG_Q6_M00622 TRANSFAC - 45554247 45554259 9.0E-06 TTTATTTCTGAAC 13 V_NFKB_C_M00208 TRANSFAC - 45553129 45553140 1.0E-06 AGGGACTTCCCA 12 V_NFKB_Q6_01_M00774 TRANSFAC + 45553125 45553140 4.0E-06 CCTTTGGGAAGTCCCT 16 V_OBOX5_05_M03066 TRANSFAC - 45554235 45554251 8.0E-06 TGAACAGATTAAATCAG 17 V_SOX14_05_M02902 TRANSFAC - 45550405 45550419 8.0E-06 TGGACACAAAGGTTC 15 V_HMGIY_Q3_M01010 TRANSFAC + 45553642 45553656 6.0E-06 AAGGTATTTTTTTCT 15 V_STAT_Q6_M00777 TRANSFAC + 45553648 45553660 2.0E-06 TTTTTTTCTTAGA 13 V_EBOX_Q6_01_M01034 TRANSFAC + 45553275 45553284 4.0E-06 CCACGTGACT 10 V_SP1_Q6_01_M00931 TRANSFAC + 45553190 45553199 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 45553195 45553204 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 45553209 45553218 4.0E-06 GGGGCGGGGC 10 V_ISL2_01_M01328 TRANSFAC - 45554332 45554347 2.0E-06 CTAAAACACTTAAGTT 16 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 45554527 45554539 0.0E+00 GTGAACTTTGAAG 13 V_P50P50_Q3_M01223 TRANSFAC - 45553129 45553141 1.0E-05 TAGGGACTTCCCA 13 V_SP1_03_M02281 TRANSFAC - 45553208 45553217 7.0E-06 CCCCGCCCCC 10 V_NKX24_01_M01350 TRANSFAC - 45554331 45554346 1.0E-06 TAAAACACTTAAGTTT 16 V_AP4_Q6_02_M01860 TRANSFAC - 45554262 45554274 7.0E-06 CCAGCTGTAGCAA 13 V_ZFP281_05_M02935 TRANSFAC - 45553734 45553750 9.0E-06 GAATTACCCCCAAATAT 17 V_TCFAP2E_04_M02926 TRANSFAC - 45553646 45553659 8.0E-06 CTAAGAAAAAAATA 14 V_HELIOSA_01_M01003 TRANSFAC + 45553009 45553019 9.0E-06 TGTAGGGAAAA 11 V_HELIOSA_01_M01003 TRANSFAC + 45554472 45554482 5.0E-06 AGTAGGGATAA 11 V_HMGA2_01_M01300 TRANSFAC + 45553735 45553749 1.0E-05 TATTTGGGGGTAATT 15 V_ELF4_04_M02850 TRANSFAC - 45552838 45552854 2.0E-06 GTTAAAGAAAAAAGTAT 17 V_ELF4_04_M02850 TRANSFAC - 45553645 45553661 4.0E-06 GTCTAAGAAAAAAATAC 17 V_ELF4_04_M02850 TRANSFAC + 45554247 45554263 2.0E-06 GTTCAGAAATAAACTTT 17 V_GC_01_M00255 TRANSFAC + 45553207 45553220 3.0E-06 CGGGGGCGGGGCTG 14 V_OBOX5_02_M01480 TRANSFAC - 45554235 45554251 8.0E-06 TGAACAGATTAAATCAG 17 V_GATA3_05_M02859 TRANSFAC + 45554230 45554251 6.0E-06 AGCAACTGATTTAATCTGTTCA 22 V_HNF1_Q6_M00790 TRANSFAC + 45552976 45552993 1.0E-05 AGGTAAATGTTTTAGTGT 18 V_NKX31_02_M02782 TRANSFAC - 45554331 45554347 2.0E-06 CTAAAACACTTAAGTTT 17 V_NKX26_01_M01322 TRANSFAC - 45554331 45554346 1.0E-06 TAAAACACTTAAGTTT 16 V_KROX_Q6_M00982 TRANSFAC - 45553203 45553216 2.0E-06 CCCGCCCCCGCAGC 14 V_NFKB_Q6_M00194 TRANSFAC - 45553128 45553141 9.0E-06 TAGGGACTTCCCAA 14 V_SP1_Q6_M00196 TRANSFAC + 45553193 45553205 5.0E-06 GCGGGGCGGGGCT 13 V_SP1_Q6_M00196 TRANSFAC + 45553207 45553219 2.0E-06 CGGGGGCGGGGCT 13 V_RXRA_04_M02895 TRANSFAC - 45554252 45554267 3.0E-06 TAGCAAAGTTTATTTC 16 V_EGR1_Q6_M01873 TRANSFAC + 45553206 45553215 4.0E-06 GCGGGGGCGG 10 V_CDX2_Q5_M00729 TRANSFAC + 45554412 45554425 4.0E-06 CTAGATTTATAACC 14 V_NKX22_02_M01372 TRANSFAC - 45554330 45554346 7.0E-06 TAAAACACTTAAGTTTC 17 V_ZBTB7B_03_M02826 TRANSFAC + 45553027 45553041 2.0E-06 TTTGCCCCCAAAAAT 15 V_ZBTB7B_03_M02826 TRANSFAC - 45553734 45553748 7.0E-06 ATTACCCCCAAATAT 15 V_NKX25_Q5_M01043 TRANSFAC - 45553432 45553441 3.0E-06 TGCCACTTGA 10 V_NKX25_Q5_M01043 TRANSFAC + 45553668 45553677 7.0E-06 TTTCACTTGA 10 V_SOX18_03_M02801 TRANSFAC - 45552997 45553012 2.0E-06 TACAATTGTTCAAGCT 16 V_CDX1_01_M01373 TRANSFAC - 45554413 45554428 2.0E-06 TGAGGTTATAAATCTA 16 V_PAX6_Q2_M00979 TRANSFAC + 45553769 45553782 7.0E-06 CGGAGCTGGAACAC 14 V_PNR_01_M01650 TRANSFAC - 45554528 45554541 7.0E-06 TACTTCAAAGTTCA 14 V_HFH1_01_M00129 TRANSFAC - 45554253 45554264 2.0E-06 CAAAGTTTATTT 12 V_NKX3A_01_M00451 TRANSFAC - 45552836 45552847 5.0E-06 AAAAAAGTATTT 12 V_POU6F1_01_M00465 TRANSFAC - 45554255 45554265 5.0E-06 GCAAAGTTTAT 11 V_NR1B1_Q6_M02110 TRANSFAC - 45554526 45554535 9.0E-06 AAAGTTCACA 10 V_NKX32_02_M01482 TRANSFAC - 45554331 45554347 4.0E-06 CTAAAACACTTAAGTTT 17 V_TFIII_Q6_M00706 TRANSFAC - 45553550 45553558 6.0E-06 AGAGGGAGG 9 V_TFIII_Q6_M00706 TRANSFAC - 45554405 45554413 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC - 45553189 45553199 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 45553194 45553204 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 45553208 45553218 1.0E-06 GCCCCGCCCCC 11 V_OTX2_Q3_M01719 TRANSFAC - 45554238 45554250 3.0E-06 GAACAGATTAAAT 13 V_USF_Q6_01_M00796 TRANSFAC + 45553273 45553284 5.0E-06 ACCCACGTGACT 12 V_FXR_IR1_Q6_M00767 TRANSFAC + 45554414 45554426 2.0E-06 AGATTTATAACCT 13 V_MTF1_06_M02882 TRANSFAC - 45553648 45553661 7.0E-06 GTCTAAGAAAAAAA 14 V_NKX25_03_M01414 TRANSFAC - 45554331 45554346 3.0E-06 TAAAACACTTAAGTTT 16 V_FAC1_01_M00456 TRANSFAC - 45555004 45555017 3.0E-06 GAGCAAAACAAGTA 14 V_BARHL1_01_M01332 TRANSFAC - 45552831 45552846 6.0E-06 AAAAAGTATTTAGTGA 16 V_GATA3_02_M00350 TRANSFAC + 45553836 45553845 1.0E-05 GAAGATAATA 10 V_ZFP206_01_M01742 TRANSFAC - 45553306 45553316 2.0E-06 TGCGCATGCGT 11 V_NKX22_01_M00485 TRANSFAC + 45554335 45554344 2.0E-06 TTAAGTGTTT 10 V_FPM315_01_M01587 TRANSFAC - 45554401 45554412 0.0E+00 GAGGGAGGAGGA 12 V_NRF1_Q6_M00652 TRANSFAC + 45553307 45553316 2.0E-06 CGCATGCGCA 10 V_PLZF_02_M01075 TRANSFAC + 45554429 45554457 9.0E-06 TTCTAGAGTTGCAAAAGTTGGAACTTTCC 29 V_EGR1_06_M02744 TRANSFAC - 45553203 45553216 4.0E-06 CCCGCCCCCGCAGC 14 V_RARA_03_M02787 TRANSFAC - 45554524 45554539 6.0E-06 CTTCAAAGTTCACAAT 16 V_NFKAPPAB_01_M00054 TRANSFAC - 45553130 45553139 7.0E-06 GGGACTTCCC 10 V_SRF_06_M02916 TRANSFAC - 45552838 45552854 0.0E+00 GTTAAAGAAAAAAGTAT 17 V_SRF_06_M02916 TRANSFAC - 45552839 45552855 2.0E-06 TGTTAAAGAAAAAAGTA 17 V_SRF_06_M02916 TRANSFAC - 45553643 45553659 3.0E-06 CTAAGAAAAAAATACCT 17 V_SRF_06_M02916 TRANSFAC - 45553645 45553661 3.0E-06 GTCTAAGAAAAAAATAC 17 V_SRF_06_M02916 TRANSFAC - 45553646 45553662 8.0E-06 GGTCTAAGAAAAAAATA 17 V_SRF_06_M02916 TRANSFAC + 45554247 45554263 4.0E-06 GTTCAGAAATAAACTTT 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 45553144 45553161 4.0E-06 GAGGGAAAGGCAGGTAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 45553603 45553620 5.0E-06 GGGAAGGAGAAAGGAATG 18 V_SP1_Q2_01_M00933 TRANSFAC - 45553208 45553217 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 45553205 45553218 5.0E-06 TGCGGGGGCGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 45553211 45553224 4.0E-06 GGCGGGGCTGGGGC 14 V_HMEF2_Q6_M00406 TRANSFAC - 45553740 45553755 3.0E-06 CTTTAGAATTACCCCC 16 V_RXRLXRB_01_M01198 TRANSFAC - 45554528 45554540 4.0E-06 ACTTCAAAGTTCA 13 V_SP1_Q4_01_M00932 TRANSFAC + 45553193 45553205 9.0E-06 GCGGGGCGGGGCT 13 V_SP1_Q4_01_M00932 TRANSFAC + 45553207 45553219 2.0E-06 CGGGGGCGGGGCT 13 V_OBOX5_01_M01381 TRANSFAC - 45554235 45554251 9.0E-06 TGAACAGATTAAATCAG 17 V_OBOX6_06_M03067 TRANSFAC + 45554235 45554251 9.0E-06 CTGATTTAATCTGTTCA 17 V_SMAD1_01_M01590 TRANSFAC - 45553606 45553617 7.0E-06 AAGGAGAAAGGA 12 V_CEBPA_Q6_M01866 TRANSFAC - 45554435 45554447 9.0E-06 AACTTTTGCAACT 13 V_NKX21_01_M01312 TRANSFAC - 45554331 45554346 2.0E-06 TAAAACACTTAAGTTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.