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BEST2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54831 bestrophin 2 chr19 + 12858406 - 12863906 12863406 Transcription Factor Binding Sites   Download all TFBS in the BEST2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 12860600 12860612 5.0E-06 GTAAACAAACACG 13 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 12859547 12859555 8.0E-06 GTTAATCCC 9 Foxa2_MA0047.2 JASPAR - 12860595 12860606 3.0E-06 TGTTTACACATG 12 GCM2_GCM_DBD_monomeric_10_1 SELEX + 12860908 12860917 9.0E-06 GATGCGGGTG 10 FOXA1_MA0148.1 JASPAR - 12860596 12860606 4.0E-06 TGTTTACACAT 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 12860597 12860608 1.0E-06 TGTGTAAACAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 12860599 12860611 0.0E+00 TGTAAACAAACAC 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 12860597 12860607 5.0E-06 TGTGTAAACAA 11 EBF1_MA0154.1 JASPAR - 12860553 12860562 5.0E-06 ACCCCAGGGA 10 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 12860802 12860815 1.0E-05 AACAAACATTTCTT 14 SRF_MA0083.1 JASPAR - 12861084 12861095 2.0E-06 GCCCATAAATGG 12 ZNF238_C2H2_full_monomeric_13_1 SELEX - 12861174 12861186 9.0E-06 CTGGCAGATGTTC 13 PITX1_homeodomain_full_monomeric_8_1 SELEX - 12859547 12859554 1.0E-05 TTAATCCC 8 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 12860795 12860803 3.0E-06 AAACCGCAA 9 Ar_MA0007.1 JASPAR + 12861188 12861209 6.0E-06 CTGGGAACACGGCGTCCCAGCC 22 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 12860600 12860610 0.0E+00 GTAAACAAACA 11 FOXI1_MA0042.1 JASPAR - 12860602 12860613 2.0E-06 TCGTGTTTGTTT 12 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 12861190 12861206 5.0E-06 GGGAACACGGCGTCCCA 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 12861190 12861206 5.0E-06 TGGGACGCCGTGTTCCC 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 12860600 12860610 0.0E+00 GTAAACAAACA 11 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 12860495 12860509 3.0E-06 CACACACCCTGGCAC 15 Foxd3_MA0041.1 JASPAR + 12860809 12860820 4.0E-06 GTTTGTTATTTT 12 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 12859547 12859554 1.0E-05 TTAATCCC 8 POU6F2_POU_full_monomeric_10_1 SELEX + 12861153 12861162 9.0E-06 CCTAATTACT 10 TEAD1_TEA_full_dimeric_17_1 SELEX - 12860803 12860819 9.0E-06 AAATAACAAACATTTCT 17 IRF3_IRF_full_trimeric_21_1 SELEX + 12860786 12860806 3.0E-06 CCAGACAGGAAACCGCAAGAA 21 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 12860900 12860911 7.0E-06 CATCCCCACACA 12 EMX2_homeodomain_DBD_monomeric_10_1 SELEX - 12861153 12861162 9.0E-06 AGTAATTAGG 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 12860598 12860610 0.0E+00 GTGTAAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 12860600 12860612 8.0E-06 GTAAACAAACACG 13 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 12861190 12861206 4.0E-06 GGGAACACGGCGTCCCA 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 12861190 12861206 5.0E-06 TGGGACGCCGTGTTCCC 17 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 12860597 12860607 5.0E-06 TGTGTAAACAA 11 AR_nuclearreceptor_full_dimeric_17_1 SELEX + 12861190 12861206 3.0E-06 GGGAACACGGCGTCCCA 17 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 12861190 12861206 4.0E-06 TGGGACGCCGTGTTCCC 17 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 12860600 12860613 7.0E-06 GTAAACAAACACGA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 12860808 12860821 3.0E-06 AAAAATAACAAACA 14 V_E2F1_Q3_01_M00938 TRANSFAC - 12860621 12860636 5.0E-06 TTGGCGCGGAGCCGGC 16 V_MAFK_03_M02776 TRANSFAC - 12860834 12860848 6.0E-06 TTGATATGCTTACTA 15 V_FOXA2_04_M02749 TRANSFAC + 12860595 12860611 0.0E+00 CATGTGTAAACAAACAC 17 V_OBOX1_01_M01450 TRANSFAC + 12859542 12859558 8.0E-06 GACTGGGGATTAACAGT 17 V_MYB_03_M02883 TRANSFAC + 12860631 12860646 9.0E-06 CGCCAAACTGCCAGGA 16 V_FOXD3_01_M00130 TRANSFAC + 12860805 12860816 9.0E-06 AAATGTTTGTTA 12 V_FOXD3_01_M00130 TRANSFAC + 12860809 12860820 5.0E-06 GTTTGTTATTTT 12 V_MAFB_05_M02775 TRANSFAC - 12860831 12860847 6.0E-06 TGATATGCTTACTAATT 17 V_FOXO4_02_M00476 TRANSFAC - 12860597 12860610 7.0E-06 TGTTTGTTTACACA 14 V_GATA3_03_M00351 TRANSFAC - 12868343 12868352 0.0E+00 AAAGATCTTA 10 V_FOXO3A_Q1_M01137 TRANSFAC + 12860599 12860610 2.0E-06 TGTAAACAAACA 12 V_HNF3_Q6_01_M01012 TRANSFAC - 12860594 12860611 5.0E-06 GTGTTTGTTTACACATGC 18 V_FOXJ1_03_M02750 TRANSFAC + 12860597 12860612 1.0E-06 TGTGTAAACAAACACG 16 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 12859376 12859387 5.0E-06 GCATTTTCCCAC 12 V_HFH4_01_M00742 TRANSFAC + 12860805 12860817 3.0E-06 AAATGTTTGTTAT 13 V_AIRE_02_M01000 TRANSFAC + 12861856 12861880 4.0E-06 GCTGGTTGTGTGGGTGTCTTTGTTA 25 V_TCFAP2E_04_M02926 TRANSFAC + 12860458 12860471 2.0E-06 GTCTCAAAAAAAAA 14 V_ELF4_04_M02850 TRANSFAC + 12860459 12860475 0.0E+00 TCTCAAAAAAAAAGTGT 17 V_FOXA2_02_M02853 TRANSFAC - 12860807 12860821 0.0E+00 AAAAATAACAAACAT 15 V_FREAC3_01_M00291 TRANSFAC + 12860595 12860610 0.0E+00 CATGTGTAAACAAACA 16 V_ZFP105_03_M02827 TRANSFAC + 12860460 12860474 4.0E-06 CTCAAAAAAAAAGTG 15 V_ZFP105_03_M02827 TRANSFAC - 12860808 12860822 4.0E-06 GAAAAATAACAAACA 15 V_HNF3G_Q4_M02015 TRANSFAC - 12860603 12860610 7.0E-06 TGTTTGTT 8 V_HNF3G_Q4_M02015 TRANSFAC + 12860808 12860815 7.0E-06 TGTTTGTT 8 V_IRF5_04_M02873 TRANSFAC + 12860993 12861007 6.0E-06 CTGATCGAGAACTGA 15 V_XFD3_01_M00269 TRANSFAC + 12860597 12860610 0.0E+00 TGTGTAAACAAACA 14 V_OLF1_01_M00261 TRANSFAC + 12860547 12860568 7.0E-06 TCCAACTCCCTGGGGTGTGCAC 22 V_ARID3A_02_M02839 TRANSFAC + 12860838 12860852 1.0E-06 AAGCATATCAAATAG 15 V_FOXK1_04_M02856 TRANSFAC - 12860809 12860823 7.0E-06 CGAAAAATAACAAAC 15 V_HNF3A_01_M01261 TRANSFAC + 12860598 12860607 5.0E-06 GTGTAAACAA 10 V_HNF3_Q6_M00791 TRANSFAC - 12860806 12860818 9.0E-06 AATAACAAACATT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 12860600 12860610 9.0E-06 TGTTTGTTTAC 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 12860808 12860818 4.0E-06 TGTTTGTTATT 11 V_OBOX2_01_M01364 TRANSFAC + 12859542 12859558 8.0E-06 GACTGGGGATTAACAGT 17 V_PITX3_01_M01343 TRANSFAC + 12859544 12859559 4.0E-06 CTGGGGATTAACAGTC 16 V_RREB1_01_M00257 TRANSFAC - 12861857 12861870 7.0E-06 ACCCACACAACCAG 14 V_XFD2_01_M00268 TRANSFAC + 12860597 12860610 3.0E-06 TGTGTAAACAAACA 14 V_EBF1_01_M02267 TRANSFAC - 12860553 12860562 5.0E-06 ACCCCAGGGA 10 V_E2F_Q4_02_M00939 TRANSFAC - 12860629 12860637 6.0E-06 TTTGGCGCG 9 V_FREAC2_01_M00290 TRANSFAC + 12860595 12860610 2.0E-06 CATGTGTAAACAAACA 16 V_E2F_03_M00516 TRANSFAC - 12860626 12860637 8.0E-06 TTTGGCGCGGAG 12 V_OBOX2_02_M03064 TRANSFAC + 12859542 12859558 8.0E-06 GACTGGGGATTAACAGT 17 V_FAC1_01_M00456 TRANSFAC - 12860808 12860821 3.0E-06 AAAAATAACAAACA 14 V_E2F_Q6_01_M00920 TRANSFAC + 12860627 12860638 3.0E-06 TCCGCGCCAAAC 12 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 12861172 12861187 8.0E-06 ACTGGCAGATGTTCAC 16 V_FOXL1_04_M02753 TRANSFAC + 12860595 12860611 1.0E-06 CATGTGTAAACAAACAC 17 V_MYOGNF1_01_M00056 TRANSFAC - 12860635 12860663 5.0E-06 CACAGCTGGGATTTGGATCCTGGCAGTTT 29 V_PITX1_01_M01484 TRANSFAC + 12859542 12859558 7.0E-06 GACTGGGGATTAACAGT 17 V_SMAD3_03_M02794 TRANSFAC + 12860781 12860797 4.0E-06 CAGCACCAGACAGGAAA 17 V_DOBOX5_01_M01463 TRANSFAC + 12859543 12859559 4.0E-06 ACTGGGGATTAACAGTC 17 V_FOXO3_01_M00477 TRANSFAC - 12860597 12860610 1.0E-06 TGTTTGTTTACACA 14 V_OTX2_01_M01387 TRANSFAC + 12859543 12859559 5.0E-06 ACTGGGGATTAACAGTC 17 V_FOXA2_03_M02260 TRANSFAC - 12860595 12860606 3.0E-06 TGTTTACACATG 12 V_E47_01_M00002 TRANSFAC + 12860568 12860582 8.0E-06 CAAGCAGGTGTGGGC 15 V_E2F_Q3_01_M00918 TRANSFAC - 12860629 12860637 6.0E-06 TTTGGCGCG 9 V_E2F_Q4_01_M00919 TRANSFAC + 12860628 12860638 8.0E-06 CCGCGCCAAAC 11 V_HSF_Q6_M00641 TRANSFAC - 12860794 12860806 9.0E-06 TTCTTGCGGTTTC 13 V_IRC900814_03_M02766 TRANSFAC - 12860813 12860828 5.0E-06 GACAACGAAAAATAAC 16 V_HB9_01_M01349 TRANSFAC - 12861149 12861164 2.0E-06 GGAGTAATTAGGAACC 16 V_SRF_06_M02916 TRANSFAC + 12860459 12860475 2.0E-06 TCTCAAAAAAAAAGTGT 17 V_HFH3_01_M00289 TRANSFAC - 12860601 12860613 0.0E+00 TCGTGTTTGTTTA 13 V_HOXA7_03_M01394 TRANSFAC - 12861149 12861164 6.0E-06 GGAGTAATTAGGAACC 16 V_FREAC4_01_M00292 TRANSFAC + 12860595 12860610 1.0E-06 CATGTGTAAACAAACA 16 V_FOXO4_01_M00472 TRANSFAC + 12860600 12860610 5.0E-06 GTAAACAAACA 11 V_OG2_02_M01441 TRANSFAC - 12861149 12861165 9.0E-06 CGGAGTAATTAGGAACC 17 V_OBOX3_02_M03065 TRANSFAC + 12859542 12859558 6.0E-06 GACTGGGGATTAACAGT 17 V_OTX1_01_M01366 TRANSFAC + 12859543 12859559 7.0E-06 ACTGGGGATTAACAGTC 17 V_AR_01_M00481 TRANSFAC - 12861191 12861205 8.0E-06 GGGACGCCGTGTTCC 15 V_OBOX3_01_M01466 TRANSFAC + 12859542 12859558 6.0E-06 GACTGGGGATTAACAGT 17 V_FOXK1_03_M02752 TRANSFAC + 12860595 12860611 1.0E-06 CATGTGTAAACAAACAC 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.