Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

COX16 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51241 COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) chr14 - 70825948 - 70831448 70826448 Transcription Factor Binding Sites   Download all TFBS in the COX16 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX4_HMG_DBD_dimeric_16_1 SELEX + 70825953 70825968 1.0E-05 TAACAATGACCGCGTT 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 70825489 70825506 1.0E-06 GTAATCAAAAAGCAAATA 18 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 70825924 70825938 7.0E-06 CAGTTAAGTAAATTG 15 SOX8_HMG_full_dimeric_15_1 SELEX + 70825954 70825968 4.0E-06 AACAATGACCGCGTT 15 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 70826515 70826526 3.0E-06 AAAACGCTGACG 12 ZNF232_C2H2_full_monomeric_19_1 SELEX - 70826142 70826160 5.0E-06 CTGTAAAATGTGAAGTTAA 19 NFATC1_NFAT_full_dimeric_15_1 SELEX + 70825966 70825980 6.0E-06 GTTCGACGATGGGAA 15 SOX7_HMG_full_dimeric_17_1 SELEX + 70825953 70825969 8.0E-06 TAACAATGACCGCGTTC 17 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 70825489 70825506 2.0E-06 GTAATCAAAAAGCAAATA 18 VENTX_homeodomain_DBD_dimeric_21_1 SELEX + 70825487 70825507 1.0E-06 CCGTAATCAAAAAGCAAATAA 21 VENTX_homeodomain_DBD_dimeric_21_1 SELEX - 70826567 70826587 7.0E-06 TGGTGATCGTAAACCGATTCA 21 TEAD1_TEA_full_dimeric_17_1 SELEX + 70826150 70826166 6.0E-06 ACATTTTACAGATTCCC 17 NR3C1_MA0113.1 JASPAR + 70826384 70826401 7.0E-06 AAGACGAGTACGTCCTTA 18 MAFK_bZIP_full_monomeric_12_1 SELEX - 70826516 70826527 3.0E-06 AAAAACGCTGAC 12 TP53_MA0106.1 JASPAR + 70824179 70824198 4.0E-06 GAAAGCATGCCCAAAAAAGC 20 ETV6_ETS_full_dimeric_15_1 SELEX - 70826405 70826419 4.0E-06 AAGGAAAAGGAAGTG 15 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 70825489 70825506 1.0E-06 GTAATCAAAAAGCAAATA 18 SOX9_HMG_full_dimeric_17_1 SELEX + 70825953 70825969 2.0E-06 TAACAATGACCGCGTTC 17 Zfx_MA0146.1 JASPAR - 70826756 70826769 3.0E-06 CCGGCCTCGGCCTC 14 V_FOXP1_01_M00987 TRANSFAC - 70822356 70822375 1.0E-06 CTATTTAAGTCTTCTAGTTT 20 V_FREAC7_01_M00293 TRANSFAC + 70825600 70825615 7.0E-06 ACCATATAAACACGGA 16 V_MEQCJUN_02_M02048 TRANSFAC - 70822340 70822350 4.0E-06 GATGTCGTCAT 11 V_EBF_Q6_M00977 TRANSFAC - 70825568 70825578 8.0E-06 TTCCCTAAGGA 11 V_FLI1_Q6_M01208 TRANSFAC - 70826403 70826413 9.0E-06 AAGGAAGTGAG 11 V_FOXA2_04_M02749 TRANSFAC + 70825495 70825511 1.0E-05 AAAAAGCAAATAAGAGT 17 V_IK_Q5_M01169 TRANSFAC + 70826751 70826760 3.0E-06 TTTGGGAGGC 10 V_HNF3_Q6_01_M01012 TRANSFAC - 70825494 70825511 5.0E-06 ACTCTTATTTGCTTTTTG 18 V_PITX2_Q6_M02114 TRANSFAC + 70826737 70826746 1.0E-06 TGTAATCCCA 10 V_PU1_Q4_M01172 TRANSFAC + 70826399 70826417 3.0E-06 TTAACTCACTTCCTTTTCC 19 V_LYF1_01_M00141 TRANSFAC + 70826751 70826759 9.0E-06 TTTGGGAGG 9 V_NR3C1_01_M02219 TRANSFAC + 70826384 70826401 7.0E-06 AAGACGAGTACGTCCTTA 18 V_CDX_Q5_M00991 TRANSFAC + 70824144 70824161 7.0E-06 TATACATGGAGCTGTAAA 18 V_MECP2_01_M01298 TRANSFAC - 70826698 70826712 8.0E-06 CCGGCCTCAAAATAC 15 V_HELIOSA_02_M01004 TRANSFAC + 70826686 70826696 6.0E-06 CTAAGGAAAAA 11 V_GFI1_01_M00250 TRANSFAC + 70826351 70826374 5.0E-06 GACTCCCAAATCTCAGCAGCTCAC 24 V_GATA3_05_M02859 TRANSFAC - 70826669 70826690 0.0E+00 CTTAGCTGATTTTATCGAGTGG 22 V_HIC1_06_M02867 TRANSFAC + 70824059 70824074 2.0E-06 GTATATGCCCAAGAAA 16 V_IRX4_01_M01410 TRANSFAC + 70822324 70822340 5.0E-06 TGCCTACAAGTTAAACA 17 V_PXRRXR_02_M01153 TRANSFAC - 70826308 70826315 1.0E-05 AGAGTTCA 8 V_HNF3_Q6_M00791 TRANSFAC + 70825496 70825508 7.0E-06 AAAAGCAAATAAG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 70825496 70825506 1.0E-06 TATTTGCTTTT 11 V_NKX22_02_M01372 TRANSFAC + 70826665 70826681 7.0E-06 ATAGCCACTCGATAAAA 17 V_MEF2_03_M00232 TRANSFAC + 70824148 70824169 9.0E-06 CATGGAGCTGTAAATTGCATGG 22 V_ELF5_01_M01197 TRANSFAC - 70826405 70826415 6.0E-06 AAAAGGAAGTG 11 V_IK2_01_M00087 TRANSFAC + 70826549 70826560 8.0E-06 AATTGGGATTTA 12 V_SPIB_01_M01204 TRANSFAC - 70826402 70826418 7.0E-06 AGGAAAAGGAAGTGAGT 17 V_NKX3A_01_M00451 TRANSFAC + 70826692 70826703 5.0E-06 AAAAAAGTATTT 12 V_SRF_Q5_02_M01007 TRANSFAC - 70824139 70824157 2.0E-06 CAGCTCCATGTATAGCCTT 19 V_PAX3_01_M00360 TRANSFAC - 70822334 70822346 9.0E-06 TCGTCATGTTTAA 13 V_KAISO_01_M01119 TRANSFAC + 70822348 70822357 2.0E-06 ATCCTGCTAA 10 V_HFH8_01_M00294 TRANSFAC - 70825602 70825614 1.0E-06 CCGTGTTTATATG 13 V_VJUN_01_M00036 TRANSFAC - 70822337 70822352 9.0E-06 AGGATGTCGTCATGTT 16 V_HAND1E47_01_M00222 TRANSFAC + 70825507 70825522 4.0E-06 AGAGTCATCTGGATTT 16 V_MYOGNF1_01_M00056 TRANSFAC - 70824175 70824203 5.0E-06 TGCATGCTTTTTTGGGCATGCTTTCAACA 29 V_ZBTB12_04_M02928 TRANSFAC + 70826639 70826653 2.0E-06 TCTGCTTAGAACACT 15 V_P53_05_M01655 TRANSFAC - 70824181 70824200 2.0E-06 ATGCTTTTTTGGGCATGCTT 20 V_PITX2_Q2_M00482 TRANSFAC + 70826737 70826747 1.0E-06 TGTAATCCCAG 11 V_TITF1_Q3_M00432 TRANSFAC + 70822456 70822465 2.0E-06 ACTCAAGTTT 10 V_SOX14_04_M02901 TRANSFAC - 70826159 70826175 8.0E-06 GACCTGGGAGGGAATCT 17 V_HFH3_01_M00289 TRANSFAC - 70825497 70825509 7.0E-06 TCTTATTTGCTTT 13 V_HNF3B_Q6_M02014 TRANSFAC - 70825499 70825507 1.0E-05 TTATTTGCT 9 V_GFI1_Q6_01_M02010 TRANSFAC - 70826357 70826366 7.0E-06 CTGAGATTTG 10 V_ATATA_B_M00311 TRANSFAC - 70822366 70822375 2.0E-06 CTATTTAAGT 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.