Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

METTL9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51108 methyltransferase like 9 chr16 + 21605855 - 21611355 21610855 Transcription Factor Binding Sites   Download all TFBS in the METTL9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP3_C2H2_DBD_monomeric_11_1 SELEX - 21611246 21611256 3.0E-06 GCCACGCCCCC 11 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 21610506 21610521 6.0E-06 GAGGGTCGAGAGGTAA 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 21611246 21611256 1.0E-06 GCCACGCCCCC 11 POU3F3_POU_DBD_monomeric_12_1 SELEX - 21611951 21611962 3.0E-06 ATGCATAACTAA 12 YY1_C2H2_full_monomeric_11_1 SELEX + 21610663 21610673 8.0E-06 TCCGCCATTTA 11 SOX8_HMG_full_dimeric_15_1 SELEX - 21615597 21615611 8.0E-06 AGAGATTCTAGTGTT 15 EWSR1-FLI1_MA0149.1 JASPAR + 21610108 21610125 7.0E-06 GGAAACAAGGCAGCCAAG 18 ZNF232_C2H2_full_monomeric_19_1 SELEX + 21612034 21612052 4.0E-06 AGGTTAACTGTAGAATTAA 19 STAT1_MA0137.2 JASPAR - 21611905 21611919 5.0E-06 CCCTTCCTGTAAAAC 15 ISL2_homeodomain_DBD_monomeric_8_1 SELEX + 21611765 21611772 1.0E-05 GCACTTAA 8 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 21611764 21611772 7.0E-06 AGCACTTAA 9 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 21612017 21612025 5.0E-06 GCCACTTAA 9 Pax4_MA0068.1 JASPAR + 21610645 21610674 7.0E-06 AAAAAAATTAAAACCACCTCCGCCATTTAC 30 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 21611764 21611774 3.0E-06 AGCACTTAAAA 11 POU3F3_POU_DBD_monomeric_13_1 SELEX + 21611896 21611908 3.0E-06 ATTATGCAAGTTT 13 POU6F2_POU_DBD_dimeric_16_1 SELEX - 21610015 21610030 1.0E-05 TTTATTTGATCATTTA 16 NKX3-1_homeodomain_full_monomeric_9_1 SELEX + 21612017 21612025 8.0E-06 GCCACTTAA 9 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 21610647 21610656 9.0E-06 AAAAATTAAA 10 POU2F3_POU_DBD_dimeric_12_1 SELEX + 21611893 21611904 6.0E-06 AAGATTATGCAA 12 FOXI1_MA0042.1 JASPAR - 21610024 21610035 0.0E+00 GGATATTTATTT 12 SRY_MA0084.1 JASPAR + 21615409 21615417 7.0E-06 GTTAACAAT 9 SP1_C2H2_DBD_monomeric_11_1 SELEX - 21611246 21611256 5.0E-06 GCCACGCCCCC 11 YY2_C2H2_full_monomeric_11_1 SELEX + 21610663 21610673 7.0E-06 TCCGCCATTTA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 21610022 21610032 8.0E-06 TCAAATAAATA 11 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 21610507 21610522 7.0E-06 AGGGTCGAGAGGTAAC 16 POU1F1_POU_DBD_monomeric_17_1 SELEX - 21611949 21611965 1.0E-05 ACGATGCATAACTAAAA 17 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 21611764 21611773 4.0E-06 AGCACTTAAA 10 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 21612017 21612026 7.0E-06 GCCACTTAAA 10 INSM1_MA0155.1 JASPAR + 21611563 21611574 1.0E-05 TGGCTGGGGGCG 12 Stat3_MA0144.1 JASPAR + 21611908 21611917 9.0E-06 TTACAGGAAG 10 Nkx3-2_MA0122.1 JASPAR - 21612017 21612025 8.0E-06 TTAAGTGGC 9 POU3F1_POU_DBD_monomeric_12_2 SELEX - 21611951 21611962 6.0E-06 ATGCATAACTAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 21611893 21611904 8.0E-06 AAGATTATGCAA 12 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 21611764 21611774 2.0E-06 AGCACTTAAAA 11 SPDEF_ETS_full_monomeric_11_1 SELEX - 21610029 21610039 4.0E-06 ACCCGGATATT 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 21610020 21610032 7.0E-06 GATCAAATAAATA 13 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 21611764 21611774 3.0E-06 AGCACTTAAAA 11 Zfx_MA0146.1 JASPAR + 21611582 21611595 6.0E-06 GGCACCGAGGCCTG 14 V_FOXP1_01_M00987 TRANSFAC - 21610014 21610033 4.0E-06 ATATTTATTTGATCATTTAT 20 V_AP2ALPHA_Q6_M01857 TRANSFAC - 21610981 21610991 3.0E-06 CGCCTCCGGCC 11 V_MEIS1_02_M01419 TRANSFAC - 21611779 21611794 3.0E-06 GACAACCTGTCAAACC 16 V_PREP1_01_M01459 TRANSFAC - 21611779 21611794 1.0E-06 GACAACCTGTCAAACC 16 V_POU3F3_01_M03090 TRANSFAC - 21611893 21611909 3.0E-06 AAAACTTGCATAATCTT 17 V_HMGIY_Q3_M01010 TRANSFAC - 21610643 21610657 2.0E-06 TTTTAATTTTTTTGA 15 V_NKX29_01_M01352 TRANSFAC + 21611759 21611775 9.0E-06 CCCTAAGCACTTAAAAA 17 V_ETS_B_M00340 TRANSFAC - 21615347 21615360 6.0E-06 GACAGGAAACACTC 14 V_SOX5_01_M00042 TRANSFAC + 21615410 21615419 7.0E-06 TTAACAATGC 10 V_MAFB_03_M02879 TRANSFAC - 21611893 21611907 8.0E-06 AACTTGCATAATCTT 15 V_OCTAMER_01_M01324 TRANSFAC - 21611893 21611909 3.0E-06 AAAACTTGCATAATCTT 17 V_ISL2_01_M01328 TRANSFAC - 21612046 21612061 8.0E-06 ATATCTCACTTAATTC 16 V_OCT1_01_M00135 TRANSFAC + 21611893 21611911 1.0E-06 AAGATTATGCAAGTTTTAC 19 V_HNF3_Q6_01_M01012 TRANSFAC - 21610016 21610033 4.0E-06 ATATTTATTTGATCATTT 18 V_GABPA_04_M02858 TRANSFAC - 21610495 21610510 6.0E-06 CCCTCATCCCACTCCA 16 V_PITX2_Q6_M02114 TRANSFAC - 21614727 21614736 9.0E-06 TGTAATTCCA 10 V_NKX24_01_M01350 TRANSFAC + 21611761 21611776 1.0E-05 CTAAGCACTTAAAAAA 16 V_SP1_02_M01303 TRANSFAC - 21610898 21610908 5.0E-06 GGGGTGGGGAG 11 V_SP1_02_M01303 TRANSFAC + 21611241 21611251 8.0E-06 GGGGCGGGGGC 11 V_AP4_Q6_02_M01860 TRANSFAC + 21610195 21610207 1.0E-05 CCAGCTGCGGTAG 13 V_PU1_Q4_M01172 TRANSFAC + 21615539 21615557 5.0E-06 TTTCTTTGCTTCCTCATAA 19 V_CDX_Q5_M00991 TRANSFAC + 21610013 21610030 5.0E-06 TATAAATGATCAAATAAA 18 V_CDX_Q5_M00991 TRANSFAC + 21610017 21610034 6.0E-06 AATGATCAAATAAATATC 18 V_CEBPB_01_M00109 TRANSFAC + 21611894 21611907 2.0E-06 AGATTATGCAAGTT 14 V_NKX62_Q2_M00489 TRANSFAC + 21610023 21610034 7.0E-06 CAAATAAATATC 12 V_AR_03_M00956 TRANSFAC - 21615589 21615615 6.0E-06 AGAAAGAGATTCTAGTGTTCTGTGAAA 27 V_TGIF2_01_M01407 TRANSFAC - 21611779 21611794 2.0E-06 GACAACCTGTCAAACC 16 V_WT1_Q6_01_M02036 TRANSFAC - 21611243 21611252 4.0E-06 CGCCCCCGCC 10 V_PDEF_02_M02075 TRANSFAC - 21610029 21610038 1.0E-05 CCCGGATATT 10 V_ELF4_04_M02850 TRANSFAC + 21610641 21610657 3.0E-06 CCTCAAAAAAATTAAAA 17 V_TCF3_04_M02816 TRANSFAC + 21610016 21610032 9.0E-06 AAATGATCAAATAAATA 17 V_MEIS2_01_M01488 TRANSFAC - 21611779 21611794 5.0E-06 GACAACCTGTCAAACC 16 V_IPF1_Q4_M00436 TRANSFAC - 21611997 21612008 8.0E-06 GAGCTAATGAAA 12 V_CEBPE_Q6_M01868 TRANSFAC - 21611896 21611909 0.0E+00 AAAACTTGCATAAT 14 V_OCT1_02_M00136 TRANSFAC + 21611893 21611907 2.0E-06 AAGATTATGCAAGTT 15 V_BEL1_B_M00312 TRANSFAC - 21611744 21611771 7.0E-06 TAAGTGCTTAGGGAGAAATGTCACCCCA 28 V_NKX31_02_M02782 TRANSFAC + 21611760 21611776 3.0E-06 CCTAAGCACTTAAAAAA 17 V_NKX31_02_M02782 TRANSFAC + 21612013 21612029 6.0E-06 TTGCGCCACTTAAACGT 17 V_NKX61_01_M00424 TRANSFAC - 21610646 21610658 3.0E-06 GTTTTAATTTTTT 13 V_KROX_Q6_M00982 TRANSFAC - 21611241 21611254 3.0E-06 CACGCCCCCGCCCC 14 V_IRX4_01_M01410 TRANSFAC + 21610163 21610179 8.0E-06 TCAATACATCTAAAACA 17 V_PXRRXR_02_M01153 TRANSFAC - 21611726 21611733 1.0E-05 AGAGTTCA 8 V_MAZ_Q6_01_M02023 TRANSFAC - 21610896 21610909 0.0E+00 GGGGGTGGGGAGGA 14 V_NKX22_02_M01372 TRANSFAC + 21611761 21611777 1.0E-06 CTAAGCACTTAAAAAAT 17 V_NKX52_01_M01315 TRANSFAC + 21611761 21611777 0.0E+00 CTAAGCACTTAAAAAAT 17 V_HMX1_02_M01481 TRANSFAC + 21611761 21611777 2.0E-06 CTAAGCACTTAAAAAAT 17 V_GR_Q6_M00192 TRANSFAC - 21615339 21615357 0.0E+00 AGGAAACACTCTGTCCTTT 19 V_TCF7_03_M02817 TRANSFAC + 21610016 21610032 7.0E-06 AAATGATCAAATAAATA 17 V_PAX8_01_M00717 TRANSFAC - 21610231 21610245 1.0E-05 CTATAAAGAATGAGT 15 V_XFD2_01_M00268 TRANSFAC + 21610023 21610036 7.0E-06 CAAATAAATATCCG 14 V_STAT4_Q5_M02117 TRANSFAC + 21610103 21610112 5.0E-06 TTCAAGGAAA 10 V_HIC1_02_M01072 TRANSFAC - 21611393 21611407 0.0E+00 GCCGGGTGCCCGGGG 15 V_INSM1_01_M02268 TRANSFAC + 21611563 21611574 1.0E-05 TGGCTGGGGGCG 12 V_ISGF4G_04_M02875 TRANSFAC + 21610172 21610185 2.0E-06 CTAAAACATTACTT 14 V_NKX23_01_M01457 TRANSFAC + 21611759 21611774 1.0E-06 CCCTAAGCACTTAAAA 16 V_NKX23_01_M01457 TRANSFAC - 21611759 21611774 0.0E+00 TTTTAAGTGCTTAGGG 16 V_NKX32_02_M01482 TRANSFAC + 21611760 21611776 0.0E+00 CCTAAGCACTTAAAAAA 17 V_GR_Q6_02_M01836 TRANSFAC - 21615339 21615351 9.0E-06 CACTCTGTCCTTT 13 V_SP4_Q5_M01273 TRANSFAC - 21611240 21611250 7.0E-06 CCCCCGCCCCG 11 V_GCNF_01_M00526 TRANSFAC - 21611147 21611164 1.0E-05 GTCATGTTCACGTACAGG 18 V_HFH8_01_M00294 TRANSFAC - 21610023 21610035 6.0E-06 GGATATTTATTTG 13 V_MRG2_01_M01395 TRANSFAC - 21611779 21611794 2.0E-06 GACAACCTGTCAAACC 16 V_IPF1_05_M01255 TRANSFAC + 21610647 21610658 2.0E-06 AAAAATTAAAAC 12 V_FOXL1_02_M02857 TRANSFAC + 21611920 21611935 9.0E-06 TTTTTAAAACAGAACG 16 V_NKX3A_02_M01383 TRANSFAC - 21611758 21611774 5.0E-06 TTTTAAGTGCTTAGGGA 17 V_NKX3A_02_M01383 TRANSFAC + 21611759 21611775 2.0E-06 CCCTAAGCACTTAAAAA 17 V_PLAG1_01_M01778 TRANSFAC - 21610443 21610458 9.0E-06 GGGGCGCAAAGAGGGG 16 V_TCF7_04_M02921 TRANSFAC - 21611917 21611931 7.0E-06 CTGTTTTAAAAACCC 15 V_DMRT7_01_M01151 TRANSFAC - 21610647 21610660 5.0E-06 TGGTTTTAATTTTT 14 V_NKX22_01_M00485 TRANSFAC - 21611763 21611772 2.0E-06 TTAAGTGCTT 10 V_FPM315_01_M01587 TRANSFAC - 21611000 21611011 7.0E-06 CGAGGAGGAGGA 12 V_STAT1STAT1_Q3_M01212 TRANSFAC + 21615588 21615600 2.0E-06 GTTTCACAGAACA 13 V_ZFP281_01_M01597 TRANSFAC - 21610900 21610910 1.0E-06 TGGGGGTGGGG 11 V_HFH3_01_M00289 TRANSFAC - 21610023 21610035 1.0E-06 GGATATTTATTTG 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 21610108 21610125 7.0E-06 GGAAACAAGGCAGCCAAG 18 V_YY1_01_M00059 TRANSFAC - 21611768 21611784 6.0E-06 CAAACCCATTTTTTAAG 17 V_PAX4_02_M00377 TRANSFAC + 21610646 21610656 5.0E-06 AAAAAATTAAA 11 V_UF1H3BETA_Q6_M01068 TRANSFAC - 21610899 21610912 5.0E-06 GCTGGGGGTGGGGA 14 V_CEBP_Q2_01_M00912 TRANSFAC - 21611894 21611905 4.0E-06 CTTGCATAATCT 12 V_HMX3_02_M01413 TRANSFAC + 21611761 21611777 0.0E+00 CTAAGCACTTAAAAAAT 17 V_RNF96_01_M01199 TRANSFAC - 21611189 21611198 7.0E-06 GCCCGCGGCC 10 V_DMRT1_01_M01146 TRANSFAC - 21611696 21611710 7.0E-06 CAGTTACATTTCTTC 15 V_STAT1_05_M01260 TRANSFAC + 21611905 21611926 1.0E-06 GTTTTACAGGAAGGGTTTTTAA 22 V_DMRT5_01_M01150 TRANSFAC + 21615578 21615592 6.0E-06 GTTTGCTTCAGTTTC 15 V_AP2_Q3_M00800 TRANSFAC + 21611189 21611204 9.0E-06 GGCCGCGGGCGGCAGG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.