Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TMX2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51075 thioredoxin-related transmembrane protein 2 chr11 + 57474994 - 57480494 57479994 Transcription Factor Binding Sites   Download all TFBS in the TMX2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 57479919 57479934 1.0E-05 CTTAATATTTTATTGG 16 SP8_C2H2_DBD_monomeric_12_1 SELEX + 57479372 57479383 6.0E-06 GCCACGCCCATC 12 SP3_C2H2_DBD_monomeric_11_1 SELEX + 57479372 57479382 6.0E-06 GCCACGCCCAT 11 SOX10_HMG_full_dimeric_15_3 SELEX + 57479238 57479252 9.0E-06 TTGAATTCAACTCAT 15 SOX10_HMG_full_dimeric_15_3 SELEX + 57479258 57479272 0.0E+00 TTGAATTCAAGTCAT 15 SOX21_HMG_DBD_dimeric_13_2 SELEX + 57479259 57479271 2.0E-06 TGAATTCAAGTCA 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 57477494 57477510 1.0E-06 TTAAATGATTATAAACA 17 HSF1_HSF_full_trimeric_13_1 SELEX - 57479815 57479827 8.0E-06 TTCCTGAACGTTC 13 RFX4_RFX_DBD_dimeric_16_1 SELEX - 57479331 57479346 9.0E-06 GGTAACCTAGGCAACG 16 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 57479832 57479846 6.0E-06 TATTTAACCTTATTA 15 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 57479371 57479384 4.0E-06 AGCCACGCCCATCA 14 SOX9_HMG_full_dimeric_17_3 SELEX + 57479257 57479273 3.0E-06 GTTGAATTCAAGTCATC 17 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 57480307 57480323 0.0E+00 AGGGACAGTCAAGGTCG 17 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 57479763 57479773 1.0E-06 TGCCTCAGGCA 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 57479763 57479773 3.0E-06 TGCCTGAGGCA 11 SOX7_HMG_full_dimeric_17_2 SELEX - 57479237 57479253 5.0E-06 GATGAGTTGAATTCAAC 17 SOX7_HMG_full_dimeric_17_2 SELEX + 57479257 57479273 3.0E-06 GTTGAATTCAAGTCATC 17 NFYA_MA0060.1 JASPAR - 57479397 57479412 8.0E-06 GCCAGCCAATCAAATC 16 ISL2_homeodomain_DBD_monomeric_8_1 SELEX - 57480409 57480416 1.0E-05 GCACTTAA 8 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 57479763 57479773 1.0E-06 TGCCTCAGGCA 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 57479763 57479773 4.0E-06 TGCCTGAGGCA 11 Klf4_MA0039.2 JASPAR - 57479372 57479381 1.0E-05 TGGGCGTGGC 10 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 57477495 57477510 1.0E-06 TAAATGATTATAAACA 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 57479919 57479934 4.0E-06 CTTAATATTTTATTGG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 57477495 57477510 1.0E-06 TAAATGATTATAAACA 16 PROP1_homeodomain_full_dimeric_11_1 SELEX + 57479836 57479846 8.0E-06 TAACCTTATTA 11 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 57479918 57479927 1.0E-05 ACCAATAAAA 10 Sox17_HMG_DBD_dimeric_15_2 SELEX + 57479238 57479252 4.0E-06 TTGAATTCAACTCAT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 57479238 57479252 1.0E-06 ATGAGTTGAATTCAA 15 Sox17_HMG_DBD_dimeric_15_2 SELEX + 57479258 57479272 0.0E+00 TTGAATTCAAGTCAT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 57479258 57479272 1.0E-06 ATGACTTGAATTCAA 15 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 57480307 57480323 0.0E+00 AGGGACAGTCAAGGTCG 17 Foxq1_MA0040.1 JASPAR - 57477503 57477513 9.0E-06 ACTTGTTTATA 11 ELF3_ETS_full_monomeric_13_1 SELEX - 57479974 57479986 5.0E-06 AACCCGGATGTAG 13 TCF4_bHLH_full_dimeric_10_1 SELEX - 57480329 57480338 7.0E-06 TACACCTGCA 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 57479877 57479886 1.0E-06 CCAATAAAAT 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 57479919 57479928 1.0E-06 CCAATAAAAT 10 SOX2_HMG_full_dimeric_15_1 SELEX + 57479258 57479272 1.0E-06 TTGAATTCAAGTCAT 15 SOX2_HMG_full_dimeric_15_1 SELEX - 57479258 57479272 2.0E-06 ATGACTTGAATTCAA 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 57479921 57479935 5.0E-06 AATAAAATATTAAGT 15 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 57479918 57479928 8.0E-06 ACCAATAAAAT 11 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 57479710 57479726 7.0E-06 TGCTTTCAAGGAGTACC 17 SOX14_HMG_DBD_dimeric_15_1 SELEX + 57479258 57479272 9.0E-06 TTGAATTCAAGTCAT 15 YY2_C2H2_full_monomeric_11_1 SELEX - 57480088 57480098 1.0E-06 ACCGCCATCTT 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 57479877 57479886 1.0E-06 CCAATAAAAT 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 57479919 57479928 1.0E-06 CCAATAAAAT 10 RFX5_RFX_DBD_dimeric_16_3 SELEX - 57479331 57479346 8.0E-06 GGTAACCTAGGCAACG 16 Foxd3_MA0041.1 JASPAR - 57479921 57479932 8.0E-06 TAATATTTTATT 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 57479371 57479385 3.0E-06 AGCCACGCCCATCAC 15 Nkx3-2_MA0122.1 JASPAR + 57480409 57480417 1.0E-05 TTAAGTGCA 9 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 57479877 57479885 6.0E-06 CCAATAAAA 9 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 57479919 57479927 6.0E-06 CCAATAAAA 9 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 57479763 57479773 1.0E-06 TGCCTCAGGCA 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 57479763 57479773 3.0E-06 TGCCTGAGGCA 11 ELF1_ETS_full_monomeric_12_1 SELEX - 57479975 57479986 1.0E-06 AACCCGGATGTA 12 SOX18_HMG_full_dimeric_15_3 SELEX + 57479238 57479252 1.0E-05 TTGAATTCAACTCAT 15 SOX18_HMG_full_dimeric_15_3 SELEX - 57479238 57479252 3.0E-06 ATGAGTTGAATTCAA 15 SOX18_HMG_full_dimeric_15_3 SELEX + 57479258 57479272 1.0E-06 TTGAATTCAAGTCAT 15 SOX18_HMG_full_dimeric_15_3 SELEX - 57479258 57479272 3.0E-06 ATGACTTGAATTCAA 15 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 57479877 57479886 1.0E-06 CCAATAAAAT 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 57479919 57479928 1.0E-06 CCAATAAAAT 10 ELF3_ETS_DBD_monomeric_12_1 SELEX - 57479975 57479986 6.0E-06 AACCCGGATGTA 12 Sox3_HMG_DBD_dimeric_17_3 SELEX + 57479257 57479273 3.0E-06 GTTGAATTCAAGTCATC 17 SPDEF_ETS_full_monomeric_11_1 SELEX - 57479975 57479985 0.0E+00 ACCCGGATGTA 11 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 57480355 57480373 7.0E-06 TTTACCTCTCTGAGGACAC 19 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 57480355 57480373 4.0E-06 GTGTCCTCAGAGAGGTAAA 19 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 57479921 57479935 8.0E-06 AATAAAATATTAAGT 15 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 57479918 57479928 6.0E-06 ACCAATAAAAT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 57479763 57479773 3.0E-06 TGCCTCAGGCA 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 57479763 57479773 6.0E-06 TGCCTGAGGCA 11 Sox1_HMG_DBD_dimeric_15_2 SELEX + 57479258 57479272 2.0E-06 TTGAATTCAAGTCAT 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 57479258 57479272 2.0E-06 ATGACTTGAATTCAA 15 POU4F1_POU_DBD_monomeric_14_1 SELEX - 57479921 57479934 2.0E-06 CTTAATATTTTATT 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 57479877 57479886 1.0E-06 CCAATAAAAT 10 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 57479919 57479928 1.0E-06 CCAATAAAAT 10 V_HOXA9_01_M01351 TRANSFAC + 57479916 57479932 8.0E-06 TAACCAATAAAATATTA 17 V_MTF1_01_M01242 TRANSFAC - 57480223 57480242 1.0E-05 GTGGGCAGACCGTGGCAGAG 20 V_DBX1_01_M01483 TRANSFAC + 57477495 57477511 6.0E-06 TAAATGATTATAAACAA 17 V_DBX1_01_M01483 TRANSFAC + 57479916 57479932 6.0E-06 TAACCAATAAAATATTA 17 V_DBX1_01_M01483 TRANSFAC - 57479916 57479932 6.0E-06 TAATATTTTATTGGTTA 17 V_DBX1_01_M01483 TRANSFAC + 57479920 57479936 4.0E-06 CAATAAAATATTAAGTT 17 V_BCL6_Q3_01_M02085 TRANSFAC + 57479712 57479721 7.0E-06 CTTTCAAGGA 10 V_FLI1_Q6_M01208 TRANSFAC + 57479822 57479832 7.0E-06 CAGGAAGTGCT 11 V_SOX40_04_M02908 TRANSFAC + 57477497 57477512 3.0E-06 AATGATTATAAACAAG 16 V_XFD1_01_M00267 TRANSFAC + 57477501 57477514 9.0E-06 ATTATAAACAAGTG 14 V_PLAGL1_04_M02890 TRANSFAC - 57479717 57479733 3.0E-06 GCGGGGGGGTACTCCTT 17 V_FOXD3_01_M00130 TRANSFAC - 57479921 57479932 6.0E-06 TAATATTTTATT 12 V_ERR3_Q2_01_M02094 TRANSFAC - 57480305 57480317 7.0E-06 AGTCAAGGTCGCG 13 V_MAFB_03_M02879 TRANSFAC - 57475700 57475714 2.0E-06 GATTTCCAAAAATAT 15 V_FOXJ2_02_M00423 TRANSFAC - 57479923 57479936 0.0E+00 AACTTAATATTTTA 14 V_OCT1_Q5_01_M00930 TRANSFAC + 57479693 57479703 1.0E-06 TAATTTTCATT 11 V_FOXO3A_Q1_M01137 TRANSFAC + 57477503 57477514 1.0E-06 TATAAACAAGTG 12 V_YY1_Q6_M00793 TRANSFAC - 57480087 57480095 7.0E-06 GCCATCTTT 9 V_AP2_Q6_M00189 TRANSFAC + 57479540 57479551 6.0E-06 CGCCCGCAGGAG 12 V_GKLF_02_M01588 TRANSFAC + 57479372 57479383 1.0E-06 GCCACGCCCATC 12 V_HOXD13_01_M01404 TRANSFAC + 57479874 57479889 2.0E-06 AGTCCAATAAAATGAC 16 V_HOXD13_01_M01404 TRANSFAC + 57479916 57479931 0.0E+00 TAACCAATAAAATATT 16 V_CDX_Q5_M00991 TRANSFAC + 57479917 57479934 7.0E-06 AACCAATAAAATATTAAG 18 V_CDP_04_M01344 TRANSFAC - 57477496 57477510 6.0E-06 TGTTTATAATCATTT 15 V_NFY_C_M00209 TRANSFAC + 57479399 57479412 1.0E-06 TTTGATTGGCTGGC 14 V_NFY_C_M00209 TRANSFAC - 57479914 57479927 4.0E-06 TTTTATTGGTTAGT 14 V_ETS_Q4_M00771 TRANSFAC - 57479822 57479833 3.0E-06 TAGCACTTCCTG 12 V_PDEF_02_M02075 TRANSFAC - 57479975 57479984 4.0E-06 CCCGGATGTA 10 V_OCT1_03_M00137 TRANSFAC - 57477496 57477508 3.0E-06 TTTATAATCATTT 13 V_HOXB13_01_M01467 TRANSFAC + 57479874 57479889 1.0E-06 AGTCCAATAAAATGAC 16 V_HOXB13_01_M01467 TRANSFAC + 57479916 57479931 0.0E+00 TAACCAATAAAATATT 16 V_HNF1_Q6_M00790 TRANSFAC - 57477494 57477511 3.0E-06 TTGTTTATAATCATTTAA 18 V_SPDEF_03_M02811 TRANSFAC + 57479974 57479989 3.0E-06 CTACATCCGGGTTTAG 16 V_RFX1_01_M00280 TRANSFAC - 57479339 57479355 6.0E-06 GAGGTGCGAGGTAACCT 17 V_HOXA3_07_M02869 TRANSFAC + 57479922 57479935 4.0E-06 ATAAAATATTAAGT 14 V_HOXB9_01_M01426 TRANSFAC + 57479916 57479931 5.0E-06 TAACCAATAAAATATT 16 V_SP1_Q6_M00196 TRANSFAC + 57479514 57479526 8.0E-06 GGGAGGCGGGGCC 13 V_RXRA_04_M02895 TRANSFAC - 57480436 57480451 3.0E-06 ACACAAAGTTTAGACT 16 V_HNF1_Q6_01_M01011 TRANSFAC + 57477493 57477513 3.0E-06 CTTAAATGATTATAAACAAGT 21 V_HNF1_Q6_01_M01011 TRANSFAC + 57479918 57479938 1.0E-06 ACCAATAAAATATTAAGTTCT 21 V_CUX1_04_M02959 TRANSFAC - 57477496 57477510 6.0E-06 TGTTTATAATCATTT 15 V_CMYB_01_M00004 TRANSFAC + 57479586 57479603 6.0E-06 GCCGAGTGCGGTTGGGGG 18 V_REX1_03_M01744 TRANSFAC + 57480088 57480099 4.0E-06 AAGATGGCGGTC 12 V_KLF7_03_M02773 TRANSFAC + 57479369 57479384 9.0E-06 AGAGCCACGCCCATCA 16 V_XFD2_01_M00268 TRANSFAC + 57477501 57477514 1.0E-06 ATTATAAACAAGTG 14 V_NCX_02_M01420 TRANSFAC + 57477495 57477511 3.0E-06 TAAATGATTATAAACAA 17 V_NCX_02_M01420 TRANSFAC + 57479916 57479932 5.0E-06 TAACCAATAAAATATTA 17 V_NCX_02_M01420 TRANSFAC + 57479920 57479936 7.0E-06 CAATAAAATATTAAGTT 17 V_NCX_02_M01420 TRANSFAC - 57479924 57479940 1.0E-05 AAAGAACTTAATATTTT 17 V_OCT4_02_M01124 TRANSFAC + 57480445 57480459 4.0E-06 TTTGTGTTTAAGATG 15 V_OCT_Q6_M00795 TRANSFAC + 57479693 57479703 4.0E-06 TAATTTTCATT 11 V_HNF4A_02_M02868 TRANSFAC + 57479868 57479883 3.0E-06 TGCTACAGTCCAATAA 16 V_PTF1BETA_Q6_M00657 TRANSFAC + 57480207 57480220 8.0E-06 GAGGAAACTGCCGC 14 V_CAAT_01_M00254 TRANSFAC + 57479914 57479925 5.0E-06 ACTAACCAATAA 12 V_AP4_01_M00005 TRANSFAC + 57479466 57479483 2.0E-06 ACAGCCAGCTCCTGACTT 18 V_SP4_04_M02914 TRANSFAC - 57479369 57479383 6.0E-06 GATGGGCGTGGCTCT 15 V_BARHL1_01_M01332 TRANSFAC - 57477491 57477506 9.0E-06 TATAATCATTTAAGCA 16 V_PDEF_01_M02040 TRANSFAC - 57479975 57479984 3.0E-06 CCCGGATGTA 10 V_FOXL1_04_M02753 TRANSFAC + 57477499 57477515 3.0E-06 TGATTATAAACAAGTGC 17 V_LUN1_01_M00480 TRANSFAC + 57475694 57475710 5.0E-06 TTCCAGATATTTTTGGA 17 V_MSX2_01_M01393 TRANSFAC - 57480105 57480121 9.0E-06 CGAGAGCAATTAGAGGT 17 V_NFY_01_M00287 TRANSFAC - 57479397 57479412 4.0E-06 GCCAGCCAATCAAATC 16 V_NFY_01_M00287 TRANSFAC + 57479914 57479929 9.0E-06 ACTAACCAATAAAATA 16 V_FOXO3_01_M00477 TRANSFAC - 57477501 57477514 3.0E-06 CACTTGTTTATAAT 14 V_TCFAP2B_04_M02924 TRANSFAC - 57479761 57479775 5.0E-06 GGTGCCTGAGGCATC 15 V_HSF2_02_M01244 TRANSFAC + 57479815 57479827 7.0E-06 GAACGTTCAGGAA 13 V_SOX18_04_M02905 TRANSFAC + 57479255 57479270 7.0E-06 TGGTTGAATTCAAGTC 16 V_FOXO1_01_M00473 TRANSFAC + 57477503 57477512 5.0E-06 TATAAACAAG 10 V_BARHL2_01_M01446 TRANSFAC - 57477491 57477506 4.0E-06 TATAATCATTTAAGCA 16 V_HOXA10_01_M01464 TRANSFAC + 57479916 57479931 5.0E-06 TAACCAATAAAATATT 16 V_NFYA_Q5_M02106 TRANSFAC - 57479397 57479410 2.0E-06 CAGCCAATCAAATC 14 V_HOXD10_01_M01375 TRANSFAC + 57479874 57479890 0.0E+00 AGTCCAATAAAATGACT 17 V_HOXD10_01_M01375 TRANSFAC + 57479916 57479932 3.0E-06 TAACCAATAAAATATTA 17 V_CEBPG_Q6_01_M01869 TRANSFAC + 57479700 57479711 9.0E-06 CATTGGACAATG 12 V_FOXK1_03_M02752 TRANSFAC + 57477499 57477515 3.0E-06 TGATTATAAACAAGTGC 17 V_TCF11_01_M00285 TRANSFAC - 57479877 57479889 1.0E-06 GTCATTTTATTGG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.