Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MTIF2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4528 mitochondrial translational initiation factor 2 chr2 - 55495815 - 55501384 55496315 Transcription Factor Binding Sites   Download all TFBS in the MTIF2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 55496158 55496166 1.0E-05 TTTAATCCC 9 SPIC_ETS_full_monomeric_14_1 SELEX - 55497052 55497065 2.0E-06 GAAAACAGAAAGTA 14 EWSR1-FLI1_MA0149.1 JASPAR - 55496597 55496614 2.0E-06 GAGAGAAAGAAAGGAAAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 55496602 55496619 8.0E-06 GGAAAGAGAGAAAGAAAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 55496610 55496627 7.0E-06 GAAAAAAAGGAAAGAGAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 55496614 55496631 7.0E-06 GAAAGAAAAAAAGGAAAG 18 PITX1_homeodomain_full_monomeric_8_1 SELEX - 55496158 55496165 1.0E-05 TTAATCCC 8 NKX3-1_homeodomain_full_monomeric_9_1 SELEX + 55496289 55496297 5.0E-06 CCCACTTAA 9 Foxq1_MA0040.1 JASPAR + 55496194 55496204 5.0E-06 CAATGTTTATG 11 HSF4_HSF_DBD_trimeric_13_1 SELEX - 55495945 55495957 7.0E-06 TTCTGGTAAGTTC 13 Gfi_MA0038.1 JASPAR + 55495967 55495976 1.0E-06 TAAATCACTG 10 znf143_MA0088.1 JASPAR - 55496036 55496055 2.0E-06 CACTTCCCAGCCTCCCATGG 20 NFATC1_NFAT_full_dimeric_20_1 SELEX + 55496420 55496439 6.0E-06 GCTGGAAAAGGTTCTTTCCG 20 NFATC1_NFAT_full_dimeric_20_1 SELEX - 55496422 55496441 1.0E-06 TCCGGAAAGAACCTTTTCCA 20 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX - 55496227 55496243 0.0E+00 TTTCGCCTAACGTGTCA 17 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 55496521 55496535 8.0E-06 GAGCCACAGGTTGAA 15 Foxd3_MA0041.1 JASPAR - 55496995 55497006 4.0E-06 ATTTGTTTTTTC 12 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 55496158 55496165 1.0E-05 TTAATCCC 8 PITX1_homeodomain_full_monomeric_9_1 SELEX - 55496158 55496166 4.0E-06 TTTAATCCC 9 NR3C1_MA0113.1 JASPAR - 55497048 55497065 0.0E+00 GAAAACAGAAAGTACTGT 18 RREB1_MA0073.1 JASPAR + 55496241 55496260 3.0E-06 AAACAACACACACCACCTGC 20 HNF1A_MA0046.1 JASPAR - 55495959 55495972 1.0E-05 GATTTATTTTTACC 14 V_MEQ_01_M02049 TRANSFAC + 55496245 55496253 7.0E-06 AACACACAC 9 V_FREAC7_01_M00293 TRANSFAC - 55496193 55496208 6.0E-06 ACTTCATAAACATTGT 16 V_ELK1_04_M01165 TRANSFAC - 55496407 55496417 6.0E-06 GACCGGAAGCC 11 V_OBOX5_05_M03066 TRANSFAC + 55496154 55496170 1.0E-06 CGCAGGGATTAAATGCA 17 V_XFD1_01_M00267 TRANSFAC - 55496193 55496206 5.0E-06 TTCATAAACATTGT 14 V_EVI1_04_M00081 TRANSFAC + 55495954 55495968 3.0E-06 AGAAAGGTAAAAATA 15 V_EVI1_04_M00081 TRANSFAC - 55496593 55496607 5.0E-06 AGAAAGGAAAGGAAA 15 V_FOXD3_01_M00130 TRANSFAC - 55496995 55497006 4.0E-06 ATTTGTTTTTTC 12 V_HOXA3_01_M00395 TRANSFAC - 55495981 55495989 7.0E-06 CGTAATTTT 9 V_MEF2_02_M00231 TRANSFAC + 55495953 55495974 5.0E-06 CAGAAAGGTAAAAATAAATCAC 22 V_IRF_Q6_01_M00972 TRANSFAC - 55497054 55497064 4.0E-06 AAAACAGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 55496589 55496604 3.0E-06 AAGGAAAGGAAAGTAA 16 V_IRF2_Q6_M01882 TRANSFAC - 55496611 55496626 2.0E-06 AAAAAAAGGAAAGAGA 16 V_IRF2_Q6_M01882 TRANSFAC - 55497051 55497066 4.0E-06 AGAAAACAGAAAGTAC 16 V_FOXO3A_Q1_M01137 TRANSFAC + 55495961 55495972 6.0E-06 TAAAAATAAATC 12 V_FOXO3A_Q1_M01137 TRANSFAC + 55496996 55497007 5.0E-06 AAAAAACAAATG 12 V_HFH4_01_M00742 TRANSFAC - 55496998 55497010 4.0E-06 TTGCATTTGTTTT 13 V_PU1_Q4_M01172 TRANSFAC + 55496590 55496608 6.0E-06 TACTTTCCTTTCCTTTCTT 19 V_PU1_Q4_M01172 TRANSFAC + 55496607 55496625 5.0E-06 TTTCTCTCTTTCCTTTTTT 19 V_NR3C1_01_M02219 TRANSFAC - 55497048 55497065 0.0E+00 GAAAACAGAAAGTACTGT 18 V_MEF2A_Q6_M02024 TRANSFAC - 55495959 55495968 5.0E-06 TATTTTTACC 10 V_PAX5_02_M00144 TRANSFAC + 55496223 55496250 8.0E-06 CCACTGACACGTTAGGCGAAACAACACA 28 V_OBOX5_02_M01480 TRANSFAC + 55496154 55496170 1.0E-06 CGCAGGGATTAAATGCA 17 V_HELIOSA_02_M01004 TRANSFAC + 55496990 55497000 6.0E-06 AGAAGGAAAAA 11 V_FOXA2_02_M02853 TRANSFAC + 55496994 55497008 5.0E-06 GGAAAAAACAAATGC 15 V_PR_Q2_M00960 TRANSFAC + 55496109 55496118 7.0E-06 GAGAGAACAG 10 V_GFI1_01_M00250 TRANSFAC + 55495961 55495984 0.0E+00 TAAAAATAAATCACTGCAGAAAAA 24 V_HNF1_Q6_M00790 TRANSFAC - 55495956 55495973 8.0E-06 TGATTTATTTTTACCTTT 18 V_NKX31_02_M02782 TRANSFAC + 55496285 55496301 3.0E-06 CCTACCCACTTAACTCC 17 V_NKX26_01_M01322 TRANSFAC + 55496286 55496301 4.0E-06 CTACCCACTTAACTCC 16 V_IRF2_01_M00063 TRANSFAC - 55497053 55497065 5.0E-06 GAAAACAGAAAGT 13 V_STAT1_01_M00224 TRANSFAC - 55496428 55496448 6.0E-06 TCTGAATTCCGGAAAGAACCT 21 V_RSRFC4_Q2_M00407 TRANSFAC + 55495957 55495973 1.0E-06 AAGGTAAAAATAAATCA 17 V_IRF_Q6_M00772 TRANSFAC + 55496588 55496602 4.0E-06 CTTACTTTCCTTTCC 15 V_IRF_Q6_M00772 TRANSFAC + 55496593 55496607 9.0E-06 TTTCCTTTCCTTTCT 15 V_IRF_Q6_M00772 TRANSFAC + 55496610 55496624 4.0E-06 CTCTCTTTCCTTTTT 15 V_HNF1_Q6_01_M01011 TRANSFAC + 55495955 55495975 5.0E-06 GAAAGGTAAAAATAAATCACT 21 V_SFPI1_04_M02896 TRANSFAC + 55495981 55495994 9.0E-06 AAAATTACGGATCT 14 V_SOX12_04_M02900 TRANSFAC - 55496602 55496617 8.0E-06 AAAGAGAGAAAGAAAG 16 V_ICSBP_Q6_M00699 TRANSFAC - 55497052 55497063 5.0E-06 AAACAGAAAGTA 12 V_FOXO1_Q5_M01216 TRANSFAC + 55496997 55497005 1.0E-06 AAAAACAAA 9 V_NKX32_02_M01482 TRANSFAC + 55496285 55496301 2.0E-06 CCTACCCACTTAACTCC 17 V_GATA4_Q3_M00632 TRANSFAC - 55497055 55497066 7.0E-06 AGAAAACAGAAA 12 V_OTX2_Q3_M01719 TRANSFAC + 55496155 55496167 2.0E-06 GCAGGGATTAAAT 13 V_HFH8_01_M00294 TRANSFAC + 55496194 55496206 5.0E-06 CAATGTTTATGAA 13 V_GFI1_Q6_M01067 TRANSFAC + 55495966 55495978 0.0E+00 ATAAATCACTGCA 13 V_NKX25_03_M01414 TRANSFAC + 55496286 55496301 7.0E-06 CTACCCACTTAACTCC 16 V_GFI1B_01_M01058 TRANSFAC + 55495967 55495978 0.0E+00 TAAATCACTGCA 12 V_PITX1_01_M01484 TRANSFAC + 55496153 55496169 8.0E-06 ACGCAGGGATTAAATGC 17 V_DOBOX5_01_M01463 TRANSFAC + 55496154 55496170 6.0E-06 CGCAGGGATTAAATGCA 17 V_OTX2_01_M01387 TRANSFAC + 55496154 55496170 5.0E-06 CGCAGGGATTAAATGCA 17 V_PITX2_Q2_M00482 TRANSFAC - 55496156 55496166 6.0E-06 TTTAATCCCTG 11 V_RSRFC4_01_M00026 TRANSFAC - 55495957 55495972 1.0E-06 GATTTATTTTTACCTT 16 V_IRF1_Q6_01_M01881 TRANSFAC + 55497052 55497065 1.0E-06 TACTTTCTGTTTTC 14 V_EWSR1FLI1_01_M02252 TRANSFAC - 55496597 55496614 2.0E-06 GAGAGAAAGAAAGGAAAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 55496602 55496619 8.0E-06 GGAAAGAGAGAAAGAAAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 55496610 55496627 7.0E-06 GAAAAAAAGGAAAGAGAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 55496614 55496631 7.0E-06 GAAAGAAAAAAAGGAAAG 18 V_FOXO1_01_M00473 TRANSFAC + 55496996 55497005 2.0E-06 AAAAAACAAA 10 V_PAX4_02_M00377 TRANSFAC + 55495979 55495989 1.0E-06 GAAAAATTACG 11 V_PIT1_Q6_M00802 TRANSFAC - 55496191 55496208 8.0E-06 ACTTCATAAACATTGTGC 18 V_HMEF2_Q6_M00406 TRANSFAC + 55495958 55495973 1.0E-05 AGGTAAAAATAAATCA 16 V_HNF1A_01_M02162 TRANSFAC - 55495959 55495972 1.0E-05 GATTTATTTTTACC 14 V_OBOX5_01_M01381 TRANSFAC + 55496154 55496170 1.0E-06 CGCAGGGATTAAATGCA 17 V_OBOX3_02_M03065 TRANSFAC + 55496153 55496169 6.0E-06 ACGCAGGGATTAAATGC 17 V_TCF3_05_M02920 TRANSFAC + 55495957 55495971 6.0E-06 AAGGTAAAAATAAAT 15 V_TCF3_05_M02920 TRANSFAC + 55496992 55497006 5.0E-06 AAGGAAAAAACAAAT 15 V_OBOX6_06_M03067 TRANSFAC - 55496154 55496170 1.0E-06 TGCATTTAATCCCTGCG 17 V_OBOX3_01_M01466 TRANSFAC + 55496153 55496169 6.0E-06 ACGCAGGGATTAAATGC 17 V_AR_Q2_M00447 TRANSFAC - 55497050 55497064 3.0E-06 AAAACAGAAAGTACT 15 V_NANOG_02_M01247 TRANSFAC - 55496596 55496615 9.0E-06 AGAGAGAAAGAAAGGAAAGG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.