Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TTLL13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 440307 tubulin tyrosine ligase-like family, member 13 chr15 + 90787763 - 90793263 90792763 Transcription Factor Binding Sites   Download all TFBS in the TTLL13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 90792692 90792703 4.0E-06 GCCACACCCACT 12 SOX21_HMG_DBD_dimeric_15_1 SELEX + 90792016 90792030 4.0E-06 AACATTTTAAGTGTT 15 Pax5_MA0014.1 JASPAR - 90792239 90792258 7.0E-06 TATGCATTCAAGAGTGACAG 20 PAX6_PAX_DBD_monomeric_19_1 SELEX + 90792240 90792258 8.0E-06 TGTCACTCTTGAATGCATA 19 SP3_C2H2_DBD_monomeric_11_1 SELEX - 90792693 90792703 5.0E-06 GCCACACCCAC 11 SOX4_HMG_DBD_dimeric_16_1 SELEX + 90792015 90792030 0.0E+00 AAACATTTTAAGTGTT 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 90792713 90792723 1.0E-05 GCCCCGCCCCC 11 SOX9_HMG_full_dimeric_16_1 SELEX + 90792015 90792030 6.0E-06 AAACATTTTAAGTGTT 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 90792752 90792767 5.0E-06 CGTGTCCATGGCAACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 90792752 90792767 7.0E-06 CGTTGCCATGGACACG 16 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 90792691 90792704 9.0E-06 AGCCACACCCACTT 14 SOX8_HMG_full_dimeric_15_1 SELEX + 90792016 90792030 1.0E-06 AACATTTTAAGTGTT 15 GATA5_GATA_DBD_monomeric_8_1 SELEX + 90795934 90795941 7.0E-06 AGATAAGA 8 Sox17_HMG_DBD_dimeric_15_1 SELEX + 90792016 90792030 1.0E-06 AACATTTTAAGTGTT 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 90792016 90792030 5.0E-06 AACACTTAAAATGTT 15 GATA4_GATA_DBD_monomeric_8_1 SELEX + 90795934 90795941 7.0E-06 AGATAAGA 8 PAX1_PAX_DBD_monomeric_17_1 SELEX + 90792240 90792256 9.0E-06 TGTCACTCTTGAATGCA 17 Klf4_MA0039.2 JASPAR + 90792694 90792703 2.0E-06 TGGGTGTGGC 10 REL_MA0101.1 JASPAR - 90792708 90792717 6.0E-06 GGGGCTTTCC 10 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 90792020 90792030 3.0E-06 AACACTTAAAA 11 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 90792752 90792767 2.0E-06 CGTTGCCATGGACACG 16 SP1_MA0079.2 JASPAR + 90792714 90792723 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 90792710 90792726 3.0E-06 AAAGCCCCGCCCCCAGG 17 SOX18_HMG_full_dimeric_15_1 SELEX + 90792016 90792030 2.0E-06 AACATTTTAAGTGTT 15 SOX18_HMG_full_dimeric_15_1 SELEX - 90792016 90792030 1.0E-06 AACACTTAAAATGTT 15 SP1_C2H2_DBD_monomeric_11_1 SELEX - 90792693 90792703 7.0E-06 GCCACACCCAC 11 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 90792607 90792622 8.0E-06 ACCGGAAGAATCTGGC 16 SOX7_HMG_full_dimeric_16_1 SELEX + 90792015 90792030 6.0E-06 AAACATTTTAAGTGTT 16 SOX7_HMG_full_dimeric_17_1 SELEX + 90792015 90792031 1.0E-06 AAACATTTTAAGTGTTC 17 Gata1_MA0035.2 JASPAR + 90795932 90795942 3.0E-06 AGAGATAAGAC 11 GATA3_GATA_full_monomeric_8_1 SELEX + 90795934 90795941 7.0E-06 AGATAAGA 8 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 90792595 90792610 1.0E-06 GTCCCATGATACACCG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 90792752 90792767 4.0E-06 CGTGTCCATGGCAACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 90792752 90792767 2.0E-06 CGTTGCCATGGACACG 16 PAX9_PAX_DBD_monomeric_17_1 SELEX + 90792240 90792256 5.0E-06 TGTCACTCTTGAATGCA 17 RFX5_RFX_DBD_dimeric_16_3 SELEX + 90792752 90792767 1.0E-06 CGTGTCCATGGCAACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 90792752 90792767 8.0E-06 CGTTGCCATGGACACG 16 Sox11_HMG_DBD_dimeric_15_1 SELEX + 90792016 90792030 1.0E-06 AACATTTTAAGTGTT 15 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 90792020 90792030 1.0E-06 AACACTTAAAA 11 Sox3_HMG_DBD_dimeric_17_1 SELEX + 90792015 90792031 4.0E-06 AAACATTTTAAGTGTTC 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 90792015 90792031 5.0E-06 GAACACTTAAAATGTTT 17 SOX9_HMG_full_dimeric_17_1 SELEX + 90792015 90792031 0.0E+00 AAACATTTTAAGTGTTC 17 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 90792020 90792030 3.0E-06 AACACTTAAAA 11 V_GATA2_02_M00348 TRANSFAC + 90795932 90795941 0.0E+00 AGAGATAAGA 10 V_RELBP52_01_M01239 TRANSFAC - 90792708 90792717 4.0E-06 GGGGCTTTCC 10 V_SP1_Q6_01_M00931 TRANSFAC - 90792713 90792722 4.0E-06 GGGGCGGGGC 10 V_ARNT_01_M00236 TRANSFAC + 90792216 90792231 8.0E-06 AAAGGCACGTGGCCTT 16 V_PLAG1_02_M01973 TRANSFAC - 90793139 90793154 5.0E-06 CCCCCTACGCTGGCCC 16 V_RFX4_03_M02789 TRANSFAC + 90792755 90792769 7.0E-06 GTCCATGGCAACGGC 15 V_SP1_03_M02281 TRANSFAC + 90792714 90792723 7.0E-06 CCCCGCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 90792692 90792703 8.0E-06 GCCACACCCACT 12 V_CMYC_02_M01154 TRANSFAC - 90792218 90792229 7.0E-06 GGCCACGTGCCT 12 V_ZFP691_03_M02833 TRANSFAC - 90792141 90792157 2.0E-06 ATCACAGTGCTCCTTCA 17 V_GC_01_M00255 TRANSFAC - 90792711 90792724 0.0E+00 TGGGGGCGGGGCTT 14 V_HELIOSA_02_M01004 TRANSFAC - 90792170 90792180 6.0E-06 TTAAGGAATAA 11 V_HNF1_Q6_M00790 TRANSFAC + 90792167 90792184 5.0E-06 TGGTTATTCCTTAATGGA 18 V_CREL_01_M00053 TRANSFAC - 90792708 90792717 6.0E-06 GGGGCTTTCC 10 V_SP1_Q6_M00196 TRANSFAC - 90792712 90792724 1.0E-06 TGGGGGCGGGGCT 13 V_HMX1_01_M00433 TRANSFAC + 90792690 90792699 5.0E-06 CAAGTGGGTG 10 V_NKX22_02_M01372 TRANSFAC - 90792017 90792033 9.0E-06 GAGAACACTTAAAATGT 17 V_GRE_C_M00205 TRANSFAC + 90792879 90792894 8.0E-06 GGGACAGCCAGTCCTG 16 V_GATA1_09_M02254 TRANSFAC + 90795932 90795942 3.0E-06 AGAGATAAGAC 11 V_STAF_02_M00264 TRANSFAC - 90792539 90792559 7.0E-06 CACTCCCATCTTTCCCTAAAC 21 V_MZF1_02_M00084 TRANSFAC - 90792861 90792873 8.0E-06 TCGCGAGGGGGAA 13 V_BLIMP1_Q6_M01066 TRANSFAC + 90793127 90793142 3.0E-06 GGGAGAGGGAAAGGGC 16 V_SP4_Q5_M01273 TRANSFAC + 90792713 90792723 1.0E-06 GCCCCGCCCCC 11 V_POU6F1_02_M01462 TRANSFAC - 90792499 90792515 5.0E-06 GCATATAATGAGGACAA 17 V_TAL1_01_M01591 TRANSFAC - 90795932 90795944 9.0E-06 CAGTCTTATCTCT 13 V_TCFE2A_03_M02823 TRANSFAC + 90793101 90793117 8.0E-06 GTGTACACGTGCAGAAA 17 V_SIRT6_01_M01797 TRANSFAC + 90795934 90795941 7.0E-06 AGATAAGA 8 V_GATA3_02_M00350 TRANSFAC + 90795932 90795941 1.0E-06 AGAGATAAGA 10 V_ZFP281_01_M01597 TRANSFAC - 90792714 90792724 6.0E-06 TGGGGGCGGGG 11 V_DMRT2_01_M01147 TRANSFAC + 90792008 90792023 5.0E-06 AGGATGGAAACATTTT 16 V_GATA2_03_M00349 TRANSFAC + 90795932 90795941 0.0E+00 AGAGATAAGA 10 V_POU6F1_03_M01479 TRANSFAC - 90792499 90792515 8.0E-06 GCATATAATGAGGACAA 17 V_VDR_Q3_M00444 TRANSFAC + 90792950 90792964 3.0E-06 GGGGAAGAGGGGACA 15 V_EKLF_Q5_M01874 TRANSFAC - 90792693 90792702 9.0E-06 CCACACCCAC 10 V_PIT1_Q6_M00802 TRANSFAC - 90792277 90792294 9.0E-06 AATTCTTTAGTAACTCTA 18 V_SP1_Q2_01_M00933 TRANSFAC + 90792714 90792723 4.0E-06 CCCCGCCCCC 10 V_GATA6_04_M02757 TRANSFAC + 90795929 90795945 2.0E-06 TTGAGAGATAAGACTGA 17 V_SP1_Q4_01_M00932 TRANSFAC - 90792712 90792724 2.0E-06 TGGGGGCGGGGCT 13 V_DMRT1_01_M01146 TRANSFAC + 90792012 90792026 6.0E-06 TGGAAACATTTTAAG 15 V_PAX4_04_M00380 TRANSFAC - 90793150 90793179 1.0E-05 ATAAAATACAGCTGAAGACCAAAAGCCCCC 30 V_GATA1_06_M00347 TRANSFAC + 90795932 90795941 3.0E-06 AGAGATAAGA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.