Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MEOX1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 4222 mesenchyme homeobox 1 chr17 - 41738431 - 41744262 41738931 MEOX1_homeodomain_full_monomeric_10_1 V_MOX1_01_M01443 Transcription Factor Binding Sites   Download all TFBS in the MEOX1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 41734228 41734236 1.0E-05 TTTAATCCC 9 VSX1_homeodomain_full_monomeric_11_1 SELEX + 41739949 41739959 4.0E-06 TGCCAATTAGC 11 VSX1_homeodomain_full_monomeric_11_1 SELEX - 41739950 41739960 8.0E-06 GGCTAATTGGC 11 EN2_homeodomain_full_monomeric_10_1 SELEX + 41739950 41739959 5.0E-06 GCCAATTAGC 10 SRY_HMG_DBD_dimeric_15_1 SELEX + 41739906 41739920 5.0E-06 AACAATCAGATTCTT 15 SRY_HMG_DBD_dimeric_15_1 SELEX - 41739906 41739920 7.0E-06 AAGAATCTGATTGTT 15 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 41739375 41739387 6.0E-06 GGGAGGGGTTAAC 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 41739900 41739911 4.0E-06 TAAAAAAACAAT 12 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 41734136 41734153 1.0E-05 TTAATTTATGGGAATGAA 18 Sox17_HMG_DBD_dimeric_15_1 SELEX - 41739906 41739920 7.0E-06 AAGAATCTGATTGTT 15 PITX1_homeodomain_full_monomeric_8_1 SELEX + 41734229 41734236 1.0E-05 TTAATCCC 8 CLOCK_bHLH_DBD_dimeric_10_1 SELEX - 41733931 41733940 8.0E-06 AACACGTGTG 10 E2F8_E2F_DBD_dimeric_12_1 SELEX - 41734178 41734189 3.0E-06 TTTTCCCCCAAA 12 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 41733961 41733978 2.0E-06 CAAATCACGTCTGATTAA 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 41733961 41733978 7.0E-06 TTAATCAGACGTGATTTG 18 SOX18_HMG_full_dimeric_15_1 SELEX + 41739906 41739920 8.0E-06 AACAATCAGATTCTT 15 SOX18_HMG_full_dimeric_15_1 SELEX - 41739906 41739920 6.0E-06 AAGAATCTGATTGTT 15 EN1_homeodomain_DBD_monomeric_10_1 SELEX + 41739950 41739959 8.0E-06 GCCAATTAGC 10 GBX1_homeodomain_DBD_monomeric_10_1 SELEX + 41739950 41739959 7.0E-06 GCCAATTAGC 10 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 41743233 41743249 1.0E-06 ACATTCCGCAAGTTCCA 17 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 41739944 41739958 5.0E-06 CTAATTGGCATGTAT 15 Foxd3_MA0041.1 JASPAR - 41739901 41739912 0.0E+00 GATTGTTTTTTT 12 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 41734229 41734236 1.0E-05 TTAATCCC 8 PITX1_homeodomain_full_monomeric_9_1 SELEX + 41734228 41734236 4.0E-06 TTTAATCCC 9 PITX1_homeodomain_full_monomeric_9_1 SELEX - 41739773 41739781 5.0E-06 TTTAATCCA 9 Hltf_MA0109.1 JASPAR + 41739446 41739455 1.0E-06 AACCTTATAT 10 SRF_MADS_full_dimeric_16_1 SELEX - 41739445 41739460 4.0E-06 TGTGCATATAAGGTTT 16 TEAD1_TEA_full_dimeric_17_1 SELEX - 41743233 41743249 2.0E-06 ACATTCCGCAAGTTCCA 17 Sox11_HMG_DBD_dimeric_15_1 SELEX - 41739906 41739920 7.0E-06 AAGAATCTGATTGTT 15 Sox2_MA0143.1 JASPAR - 41739819 41739833 2.0E-06 TCTTTGTACTGCAGA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 41739901 41739913 1.0E-06 AAAAAAACAATCA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 41739668 41739677 9.0E-06 AATGCCAAAT 10 RREB1_MA0073.1 JASPAR - 41734247 41734266 3.0E-06 ACCCAAACCACTCCCAGCCC 20 V_RUSH1A_02_M01107 TRANSFAC + 41739446 41739455 1.0E-06 AACCTTATAT 10 V_FOXP1_01_M00987 TRANSFAC + 41739499 41739518 0.0E+00 TTGTCTGTATTTTTTTTTTA 20 V_CDP_03_M01342 TRANSFAC + 41739429 41739445 3.0E-06 AACTATTAATCATCAGA 17 V_CEBPG_Q6_M00622 TRANSFAC - 41739347 41739359 1.0E-06 TTCACTTCAGAAA 13 V_OSR1_03_M02784 TRANSFAC + 41734158 41734173 4.0E-06 AACCACAGTAGCAAGG 16 V_OBOX6_01_M01445 TRANSFAC - 41734227 41734241 3.0E-06 CAATGGGGATTAAAG 15 V_HNF3B_01_M00131 TRANSFAC - 41739900 41739914 2.0E-06 CTGATTGTTTTTTTA 15 V_ZSCAN4_03_M02838 TRANSFAC - 41739448 41739464 3.0E-06 TAGATGTGCATATAAGG 17 V_OBOX5_05_M03066 TRANSFAC - 41734224 41734240 7.0E-06 AATGGGGATTAAAGACC 17 V_CHOP_01_M00249 TRANSFAC - 41739719 41739731 1.0E-06 AAATGCAATCACC 13 V_OBOX1_01_M01450 TRANSFAC - 41734225 41734241 2.0E-06 CAATGGGGATTAAAGAC 17 V_SOX30_03_M02804 TRANSFAC + 41739902 41739917 4.0E-06 AAAAAACAATCAGATT 16 V_HMGIY_Q3_M01010 TRANSFAC + 41739502 41739516 1.0E-06 TCTGTATTTTTTTTT 15 V_FOXD3_01_M00130 TRANSFAC - 41739901 41739912 0.0E+00 GATTGTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC + 41739499 41739514 5.0E-06 TTGTCTGTATTTTTTT 16 V_GM397_03_M02760 TRANSFAC - 41739448 41739464 9.0E-06 TAGATGTGCATATAAGG 17 V_FOXO4_02_M00476 TRANSFAC - 41739602 41739615 8.0E-06 ATTTTGTTAACAGT 14 V_SATB1_Q3_M01723 TRANSFAC + 41739731 41739746 2.0E-06 TGATTTAAAGGCCCTT 16 V_MAFB_03_M02879 TRANSFAC - 41739787 41739801 1.0E-06 GACTTGCAAAAAAGA 15 V_GBX2_01_M01382 TRANSFAC - 41739946 41739962 9.0E-06 GTGGCTAATTGGCATGT 17 V_HNF3_Q6_01_M01012 TRANSFAC + 41739501 41739518 8.0E-06 GTCTGTATTTTTTTTTTA 18 V_HNF3_Q6_01_M01012 TRANSFAC - 41739897 41739914 3.0E-06 CTGATTGTTTTTTTAAGT 18 V_CUX1_03_M02958 TRANSFAC + 41739429 41739445 3.0E-06 AACTATTAATCATCAGA 17 V_GABPA_04_M02858 TRANSFAC + 41734134 41734149 8.0E-06 CCTTCATTCCCATAAA 16 V_GM497_04_M02864 TRANSFAC + 41739528 41739543 1.0E-06 AGCAGCACACACACAC 16 V_GM497_04_M02864 TRANSFAC + 41739833 41739848 9.0E-06 AAAGGCACACTCTAGA 16 V_TCFAP2E_04_M02926 TRANSFAC - 41739506 41739519 2.0E-06 TTAAAAAAAAAATA 14 V_TCFAP2E_04_M02926 TRANSFAC - 41739509 41739522 0.0E+00 TCCTTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 41739510 41739523 4.0E-06 TTCCTTAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 41739896 41739909 2.0E-06 AACTTAAAAAAACA 14 V_P53_02_M00272 TRANSFAC + 41733979 41733988 4.0E-06 AGGCATGTCT 10 V_P53_02_M00272 TRANSFAC - 41733979 41733988 1.0E-06 AGACATGCCT 10 V_CDP_04_M01344 TRANSFAC - 41739432 41739446 1.0E-06 TTCTGATGATTAATA 15 V_STAT4_Q4_M01666 TRANSFAC + 41734140 41734153 2.0E-06 TTCCCATAAATTAA 14 V_TRF1_01_M01237 TRANSFAC - 41739409 41739423 3.0E-06 CTAGGGTTTTGGTTG 15 V_ELF4_04_M02850 TRANSFAC - 41739504 41739520 3.0E-06 CTTAAAAAAAAAATACA 17 V_ELF4_04_M02850 TRANSFAC - 41739505 41739521 0.0E+00 CCTTAAAAAAAAAATAC 17 V_ELF4_04_M02850 TRANSFAC - 41739506 41739522 6.0E-06 TCCTTAAAAAAAAAATA 17 V_ELF4_04_M02850 TRANSFAC - 41739507 41739523 5.0E-06 TTCCTTAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC - 41739508 41739524 3.0E-06 TTTCCTTAAAAAAAAAA 17 V_COMP1_01_M00057 TRANSFAC + 41739690 41739713 3.0E-06 AGTGAGGAATAAGAGCAAGAGACA 24 V_SOX7_03_M02807 TRANSFAC + 41739899 41739920 4.0E-06 TTAAAAAAACAATCAGATTCTT 22 V_OBOX5_02_M01480 TRANSFAC - 41734224 41734240 7.0E-06 AATGGGGATTAAAGACC 17 V_ZFP105_03_M02827 TRANSFAC - 41739504 41739518 7.0E-06 TAAAAAAAAAATACA 15 V_ZFP105_03_M02827 TRANSFAC - 41739505 41739519 4.0E-06 TTAAAAAAAAAATAC 15 V_ZFP105_03_M02827 TRANSFAC - 41739506 41739520 2.0E-06 CTTAAAAAAAAAATA 15 V_ZFP105_03_M02827 TRANSFAC + 41739899 41739913 2.0E-06 TTAAAAAAACAATCA 15 V_GFI1_01_M00250 TRANSFAC + 41733955 41733978 6.0E-06 ATGAGACAAATCACGTCTGATTAA 24 V_GFI1_01_M00250 TRANSFAC + 41739901 41739924 5.0E-06 AAAAAAACAATCAGATTCTTCCTT 24 V_HNF1_Q6_M00790 TRANSFAC - 41739423 41739440 6.0E-06 TGATTAATAGTTGCCTGC 18 Ddit3_Cebpa_MA0019.1 JASPAR - 41739720 41739731 3.0E-06 AAATGCAATCAC 12 V_HNF3_Q6_M00791 TRANSFAC + 41739899 41739911 6.0E-06 TTAAAAAAACAAT 13 V_HNF1_Q6_01_M01011 TRANSFAC + 41739422 41739442 6.0E-06 AGCAGGCAACTATTAATCATC 21 V_OBOX2_01_M01364 TRANSFAC - 41734225 41734241 2.0E-06 CAATGGGGATTAAAGAC 17 V_TATA_C_M00216 TRANSFAC - 41739485 41739494 3.0E-06 TCTTTAAAAG 10 V_CUX1_04_M02959 TRANSFAC - 41739432 41739446 1.0E-06 TTCTGATGATTAATA 15 V_PBX1_01_M00096 TRANSFAC + 41739433 41739441 1.0E-05 ATTAATCAT 9 V_NFE4_Q5_M02105 TRANSFAC - 41739368 41739379 5.0E-06 CTCCCTCTCCTC 12 V_PITX3_01_M01343 TRANSFAC - 41734224 41734239 8.0E-06 ATGGGGATTAAAGACC 16 V_CRX_02_M01436 TRANSFAC - 41734226 41734241 4.0E-06 CAATGGGGATTAAAGA 16 V_RREB1_01_M00257 TRANSFAC + 41739386 41739399 9.0E-06 ACCCACACACACAA 14 V_OCAB_Q6_M02113 TRANSFAC + 41739452 41739462 1.0E-06 ATATGCACATC 11 V_OCAB_Q6_M02113 TRANSFAC - 41739469 41739479 1.0E-06 ATCTGCAAATC 11 V_MEF2_Q6_01_M00941 TRANSFAC - 41739898 41739909 8.0E-06 TGTTTTTTTAAG 12 V_NCX_02_M01420 TRANSFAC + 41734143 41734159 9.0E-06 CCATAAATTAAAGACAA 17 V_STAT4_Q5_M02117 TRANSFAC + 41739777 41739786 2.0E-06 TTAAAAGAAA 10 V_TFIII_Q6_M00706 TRANSFAC + 41739372 41739380 6.0E-06 AGAGGGAGG 9 V_PTF1BETA_Q6_M00657 TRANSFAC + 41734115 41734128 3.0E-06 GAGGAAACCACCGC 14 V_S8_01_M00099 TRANSFAC + 41739946 41739961 8.0E-06 ACATGCCAATTAGCCA 16 V_GFI1_Q6_M01067 TRANSFAC + 41733960 41733972 5.0E-06 ACAAATCACGTCT 13 V_MTF1_06_M02882 TRANSFAC - 41739508 41739521 1.0E-05 CCTTAAAAAAAAAA 14 V_OBOX2_02_M03064 TRANSFAC - 41734225 41734241 2.0E-06 CAATGGGGATTAAAGAC 17 V_OCT1_Q6_M00195 TRANSFAC + 41739944 41739958 3.0E-06 ATACATGCCAATTAG 15 V_GFI1B_01_M01058 TRANSFAC + 41733961 41733972 5.0E-06 CAAATCACGTCT 12 V_PITX1_01_M01484 TRANSFAC - 41734225 41734241 1.0E-06 CAATGGGGATTAAAGAC 17 V_PARP_Q3_M01211 TRANSFAC + 41739632 41739641 3.0E-06 TTAGAAAAAG 10 V_OSR2_03_M02785 TRANSFAC + 41734158 41734173 2.0E-06 AACCACAGTAGCAAGG 16 V_OTX2_01_M01387 TRANSFAC - 41734224 41734240 9.0E-06 AATGGGGATTAAAGACC 17 V_ASCL2_04_M02841 TRANSFAC - 41739371 41739386 6.0E-06 TTAACCCCTCCCTCTC 16 V_SRF_01_M00152 TRANSFAC - 41739444 41739461 3.0E-06 ATGTGCATATAAGGTTTC 18 V_PITX2_Q2_M00482 TRANSFAC + 41734228 41734238 5.0E-06 TTTAATCCCCA 11 V_OCT1_06_M00162 TRANSFAC - 41739945 41739958 5.0E-06 CTAATTGGCATGTA 14 V_DMRT2_01_M01147 TRANSFAC + 41739487 41739502 4.0E-06 TTTAAAGAAACATTGT 16 V_SOX2_01_M02246 TRANSFAC - 41739819 41739833 2.0E-06 TCTTTGTACTGCAGA 15 V_SRF_06_M02916 TRANSFAC - 41739503 41739519 2.0E-06 TTAAAAAAAAAATACAG 17 V_SRF_06_M02916 TRANSFAC - 41739504 41739520 0.0E+00 CTTAAAAAAAAAATACA 17 V_SRF_06_M02916 TRANSFAC - 41739505 41739521 0.0E+00 CCTTAAAAAAAAAATAC 17 V_SRF_06_M02916 TRANSFAC + 41739897 41739913 1.0E-06 ACTTAAAAAAACAATCA 17 V_NFE2_Q6_M02104 TRANSFAC + 41733982 41733997 2.0E-06 CATGTCTCAGCAGAGT 16 V_FOXO1_01_M00473 TRANSFAC + 41739902 41739911 3.0E-06 AAAAAACAAT 10 V_FOXO4_01_M00472 TRANSFAC + 41739903 41739913 5.0E-06 AAAAACAATCA 11 V_OBOX5_01_M01381 TRANSFAC - 41734224 41734240 8.0E-06 AATGGGGATTAAAGACC 17 V_OBOX6_02_M03068 TRANSFAC - 41734227 41734241 3.0E-06 CAATGGGGATTAAAG 15 V_OBOX3_02_M03065 TRANSFAC - 41734225 41734241 8.0E-06 CAATGGGGATTAAAGAC 17 V_TCF3_05_M02920 TRANSFAC - 41739509 41739523 5.0E-06 TTCCTTAAAAAAAAA 15 V_STAT1_05_M01260 TRANSFAC - 41734130 41734151 6.0E-06 AATTTATGGGAATGAAGGATTT 22 V_OBOX6_06_M03067 TRANSFAC + 41734224 41734240 8.0E-06 GGTCTTTAATCCCCATT 17 V_OBOX3_01_M01466 TRANSFAC - 41734225 41734241 8.0E-06 CAATGGGGATTAAAGAC 17 V_NANOG_02_M01247 TRANSFAC - 41739500 41739519 6.0E-06 TTAAAAAAAAAATACAGACA 20 V_NANOG_02_M01247 TRANSFAC + 41739899 41739918 7.0E-06 TTAAAAAAACAATCAGATTC 20 V_TCF11_01_M00285 TRANSFAC + 41739986 41739998 4.0E-06 GTCATTTTTCTTC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.