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KCNA6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3742 potassium voltage-gated channel, shaker-related subfamily, member 6 chr12 + 4913341 - 4918841 4918341 Transcription Factor Binding Sites   Download all TFBS in the KCNA6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 4918252 4918263 9.0E-06 ACCACACCCCCT 12 CUX1_CUT_DBD_monomeric_10_1 SELEX + 4919338 4919347 5.0E-06 TGATCAATAT 10 SP3_C2H2_DBD_monomeric_11_1 SELEX - 4918253 4918263 1.0E-05 ACCACACCCCC 11 NEUROD2_bHLH_full_dimeric_10_1 SELEX + 4916658 4916667 4.0E-06 GACATATGTT 10 NEUROD2_bHLH_full_dimeric_10_1 SELEX - 4916658 4916667 8.0E-06 AACATATGTC 10 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 4922966 4922979 9.0E-06 AGGGTAAAAGTTGA 14 SPIC_ETS_full_monomeric_14_1 SELEX - 4916730 4916743 9.0E-06 AGTAAGGGGAAGTC 14 TBR1_TBX_DBD_monomeric_10_1 SELEX + 4918304 4918313 6.0E-06 ACGTGTGAAA 10 HSF1_HSF_full_trimeric_13_1 SELEX + 4923126 4923138 9.0E-06 TTCCAGACTGTTC 13 RFX4_RFX_DBD_dimeric_16_1 SELEX + 4923110 4923125 3.0E-06 GGTTGCCGTAGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 4923110 4923125 3.0E-06 GGTTGCTACGGCAACC 16 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 4923038 4923051 2.0E-06 AGAAAACATTTTCT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 4923038 4923051 2.0E-06 AGAAAATGTTTTCT 14 EOMES_TBX_DBD_monomeric_13_1 SELEX + 4918303 4918315 9.0E-06 AACGTGTGAAAGC 13 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 4923110 4923125 1.0E-06 GGTTGCCGTAGCAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 4923110 4923125 1.0E-06 GGTTGCTACGGCAACC 16 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 4923038 4923051 2.0E-06 AGAAAACATTTTCT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 4923038 4923051 2.0E-06 AGAAAATGTTTTCT 14 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 4916658 4916667 6.0E-06 GACATATGTT 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 4916658 4916667 4.0E-06 AACATATGTC 10 CUX2_CUT_DBD_monomeric_10_1 SELEX + 4919338 4919347 7.0E-06 TGATCAATAT 10 HSF4_HSF_DBD_trimeric_13_1 SELEX + 4923126 4923138 1.0E-05 TTCCAGACTGTTC 13 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX + 4916657 4916668 2.0E-06 AGACATATGTTG 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 4916657 4916668 3.0E-06 CAACATATGTCT 12 TBR1_TBX_full_monomeric_11_1 SELEX + 4918303 4918313 9.0E-06 AACGTGTGAAA 11 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX + 4918460 4918472 4.0E-06 TGCCACGTCACTT 13 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 4923038 4923051 6.0E-06 AGAAAACATTTTCT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 4923038 4923051 6.0E-06 AGAAAATGTTTTCT 14 RARA_nuclearreceptor_full_dimeric_17_1 SELEX - 4916713 4916729 3.0E-06 AGGGCATGTAGAGGTGA 17 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 4916658 4916667 5.0E-06 GACATATGTT 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 4916658 4916667 3.0E-06 AACATATGTC 10 SP1_C2H2_DBD_monomeric_11_1 SELEX - 4918253 4918263 2.0E-06 ACCACACCCCC 11 RFX2_RFX_DBD_dimeric_16_1 SELEX + 4923110 4923125 2.0E-06 GGTTGCCGTAGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 4923110 4923125 2.0E-06 GGTTGCTACGGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 4923110 4923125 0.0E+00 GGTTGCCGTAGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 4923110 4923125 1.0E-06 GGTTGCTACGGCAACC 16 TBX2_TBX_full_monomeric_11_1 SELEX + 4918303 4918313 4.0E-06 AACGTGTGAAA 11 Atoh1_bHLH_DBD_dimeric_10_1 SELEX + 4916658 4916667 3.0E-06 GACATATGTT 10 Atoh1_bHLH_DBD_dimeric_10_1 SELEX - 4916658 4916667 1.0E-06 AACATATGTC 10 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 4923038 4923051 6.0E-06 AGAAAACATTTTCT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 4923038 4923051 7.0E-06 AGAAAATGTTTTCT 14 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 4923013 4923029 4.0E-06 GTAATCACCCTCATCAC 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 4923013 4923029 2.0E-06 GTGATGAGGGTGATTAC 17 CREB3L1_bZIP_full_dimeric_14_1 SELEX + 4918459 4918472 4.0E-06 CTGCCACGTCACTT 14 TBX20_TBX_DBD_monomeric_15_1 SELEX + 4918300 4918314 4.0E-06 GTGAACGTGTGAAAG 15 NEUROG2_bHLH_full_dimeric_10_1 SELEX + 4916658 4916667 2.0E-06 GACATATGTT 10 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 4916658 4916667 0.0E+00 AACATATGTC 10 SPI1_ETS_full_monomeric_14_1 SELEX - 4916730 4916743 1.0E-05 AGTAAGGGGAAGTC 14 RUNX1_MA0002.2 JASPAR + 4917128 4917138 8.0E-06 CACTGTGGTTT 11 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 4922965 4922980 9.0E-06 GAGGGTAAAAGTTGAG 16 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 4916658 4916667 9.0E-06 AACATATGTC 10 OLIG2_bHLH_full_dimeric_10_1 SELEX + 4916658 4916667 7.0E-06 GACATATGTT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX - 4916658 4916667 4.0E-06 AACATATGTC 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 4916658 4916667 9.0E-06 GACATATGTT 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 4916658 4916667 4.0E-06 AACATATGTC 10 V_HOXA9_01_M01351 TRANSFAC + 4916829 4916845 7.0E-06 GCTTTCATAAAATCTTT 17 V_MEQ_01_M02049 TRANSFAC - 4918478 4918486 7.0E-06 AACACACAC 9 RXR_RAR_DR5_MA0159.1 JASPAR - 4916713 4916729 4.0E-06 AGGGCATGTAGAGGTGA 17 V_SPI1_01_M01203 TRANSFAC - 4916727 4916743 5.0E-06 AGTAAGGGGAAGTCAGG 17 V_DBX1_01_M01483 TRANSFAC - 4918180 4918196 5.0E-06 TATTTCATCAATAAGAA 17 V_FOXP3_Q4_M00992 TRANSFAC - 4923033 4923049 0.0E+00 AAAATGTTTTCTCAGGG 17 V_TCF3_01_M01594 TRANSFAC - 4917151 4917163 2.0E-06 TCTTTGTATTGCA 13 V_NRSF_Q4_M01028 TRANSFAC - 4918227 4918245 6.0E-06 CCGCAGTCGGCTCTTCTCA 19 V_HMGIY_Q3_M01010 TRANSFAC - 4918213 4918227 1.0E-05 ATTTCAATTTACCGA 15 V_EVI1_04_M00081 TRANSFAC - 4923047 4923061 8.0E-06 TGACTTGAAAAGAAA 15 V_BCL6_01_M01183 TRANSFAC + 4916830 4916845 3.0E-06 CTTTCATAAAATCTTT 16 V_GATA3_03_M00351 TRANSFAC - 4916836 4916845 3.0E-06 AAAGATTTTA 10 V_TCF4_Q5_01_M02033 TRANSFAC + 4916482 4916491 7.0E-06 ATCAAAGGCC 10 V_CBF_02_M01080 TRANSFAC + 4917126 4917141 0.0E+00 ACCACTGTGGTTTTAA 16 V_SP1_Q6_01_M00931 TRANSFAC + 4918165 4918174 7.0E-06 GGGGCGGGGT 10 V_RFX4_03_M02789 TRANSFAC + 4923113 4923127 5.0E-06 TGCCGTAGCAACCTT 15 V_MAF_Q6_M00648 TRANSFAC - 4916787 4916802 8.0E-06 AGAAAGGAAGTGGGTT 16 V_STAT6_01_M00494 TRANSFAC + 4918370 4918377 7.0E-06 TATTTCCA 8 V_SP1_02_M01303 TRANSFAC + 4918165 4918175 3.0E-06 GGGGCGGGGTG 11 V_PU1_Q4_M01172 TRANSFAC + 4916724 4916742 4.0E-06 TGCCCTGACTTCCCCTTAC 19 V_PU1_Q4_M01172 TRANSFAC + 4916785 4916803 5.0E-06 GCAACCCACTTCCTTTCTT 19 V_NFAT2_01_M01748 TRANSFAC - 4918370 4918378 6.0E-06 ATGGAAATA 9 V_MEF2A_Q6_M02024 TRANSFAC - 4917136 4917145 2.0E-06 TATTTTAAAA 10 V_TST1_01_M00133 TRANSFAC + 4917132 4917146 7.0E-06 GTGGTTTTAAAATAC 15 V_ZNF219_01_M01122 TRANSFAC - 4918283 4918294 1.0E-05 CGCCCCCCTCCA 12 V_PR_Q2_M00960 TRANSFAC - 4923133 4923142 7.0E-06 GAGAGAACAG 10 V_FKLF_Q5_M01837 TRANSFAC + 4918432 4918441 2.0E-06 GGGGTGGGAG 10 V_RUNX1_01_M02257 TRANSFAC + 4917128 4917138 8.0E-06 CACTGTGGTTT 11 V_POLY_C_M00212 TRANSFAC + 4916833 4916850 7.0E-06 TCATAAAATCTTTCTCTT 18 V_MAZ_Q6_01_M02023 TRANSFAC + 4918244 4918257 4.0E-06 GGGGGTGGAGGGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 4918431 4918444 8.0E-06 TGGGGTGGGAGGGG 14 V_PPARA_02_M00518 TRANSFAC - 4923015 4923033 7.0E-06 GATGGTGATGAGGGTGATT 19 V_SP1_01_M00008 TRANSFAC + 4918165 4918174 3.0E-06 GGGGCGGGGT 10 V_SRF_03_M01304 TRANSFAC - 4916795 4916807 4.0E-06 CACCAAGAAAGGA 13 V_GR_Q6_02_M01836 TRANSFAC + 4923129 4923141 7.0E-06 CAGACTGTTCTCT 13 V_ELF1_Q6_M00746 TRANSFAC - 4916731 4916742 7.0E-06 GTAAGGGGAAGT 12 V_PLAG1_01_M01778 TRANSFAC + 4918442 4918457 7.0E-06 GGGGCAGCAGGCGGGG 16 V_TBX15_02_M01264 TRANSFAC + 4918296 4918313 1.0E-06 GAATGTGAACGTGTGAAA 18 V_EGR1_06_M02744 TRANSFAC - 4918239 4918252 4.0E-06 TCCACCCCCGCAGT 14 V_LEF1TCF1_Q4_M00978 TRANSFAC - 4916479 4916489 1.0E-06 CCTTTGATGCT 11 V_RXR_RAR_01_M02272 TRANSFAC - 4916713 4916729 4.0E-06 AGGGCATGTAGAGGTGA 17 V_HSF2_02_M01244 TRANSFAC - 4923126 4923138 7.0E-06 GAACAGTCTGGAA 13 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 4917131 4917138 1.0E-05 TGTGGTTT 8 V_SOX2_Q6_M01272 TRANSFAC - 4917152 4917167 9.0E-06 GAGTTCTTTGTATTGC 16 V_RFX3_04_M02788 TRANSFAC + 4923109 4923131 9.0E-06 TGGTTGCCGTAGCAACCTTCCAG 23 V_ARP1_01_M00155 TRANSFAC + 4918540 4918555 3.0E-06 CGAAGCCTTGAGCCGT 16 V_SOX5_04_M02910 TRANSFAC - 4918180 4918194 2.0E-06 TTTCATCAATAAGAA 15 V_PBX1_04_M01357 TRANSFAC - 4918180 4918196 9.0E-06 TATTTCATCAATAAGAA 17 V_SOX9_Q4_M01284 TRANSFAC + 4917155 4917165 9.0E-06 ATACAAAGAAC 11 V_RFX1_02_M00281 TRANSFAC + 4923109 4923126 0.0E+00 TGGTTGCCGTAGCAACCT 18 V_RFX1_02_M00281 TRANSFAC - 4923109 4923126 1.0E-06 AGGTTGCTACGGCAACCA 18 V_TCF4_01_M01705 TRANSFAC - 4916481 4916489 5.0E-06 CCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.