Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SEC61A1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29927 Sec61 alpha 1 subunit (S. cerevisiae) chr3 + 127766211 - 127771711 127771211 Transcription Factor Binding Sites   Download all TFBS in the SEC61A1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Sox1_HMG_DBD_dimeric_14_1 SELEX - 127773335 127773348 7.0E-06 TGAATCAGTGTTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX + 127775291 127775304 1.0E-06 TGAATTTAAATGCA 14 SP3_C2H2_DBD_monomeric_11_1 SELEX + 127770696 127770706 6.0E-06 CCCACACCCAC 11 SOX10_HMG_full_dimeric_15_3 SELEX - 127773923 127773937 3.0E-06 TTGAGTTTCAGTCAC 15 SOX21_HMG_DBD_dimeric_13_2 SELEX - 127773924 127773936 5.0E-06 TGAGTTTCAGTCA 13 SOX9_HMG_full_dimeric_17_3 SELEX - 127773922 127773938 6.0E-06 TTTGAGTTTCAGTCACA 17 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 127770498 127770509 1.0E-06 GCTTTGCCCACA 12 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 127773982 127773998 8.0E-06 AAGAACAAAGAATGTCA 17 SOX8_HMG_full_dimeric_17_1 SELEX + 127769692 127769708 3.0E-06 TATCAATGGTACTGACA 17 SOX8_HMG_full_dimeric_17_1 SELEX - 127771937 127771953 8.0E-06 AATAAAGCACAGTGATT 17 SOX7_HMG_full_dimeric_17_2 SELEX - 127773922 127773938 1.0E-06 TTTGAGTTTCAGTCACA 17 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 127773440 127773454 5.0E-06 ATGCTGACTCAGTGC 15 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 127770376 127770387 6.0E-06 GATGACATCATA 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 127770376 127770387 1.0E-05 TATGATGTCATC 12 PAX1_PAX_DBD_monomeric_17_1 SELEX - 127771357 127771373 7.0E-06 GGTCCCGCTTCAGCTCA 17 Sox1_HMG_DBD_dimeric_13_1 SELEX - 127769694 127769706 4.0E-06 TCAGTACCATTGA 13 JDP2_bZIP_full_dimeric_12_1 SELEX + 127770376 127770387 5.0E-06 GATGACATCATA 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 127770376 127770387 8.0E-06 TATGATGTCATC 12 Tcfcp2l1_MA0145.1 JASPAR + 127773416 127773429 3.0E-06 CCAGTTCTGGCCAG 14 Sox17_HMG_DBD_dimeric_15_2 SELEX - 127773923 127773937 3.0E-06 TTGAGTTTCAGTCAC 15 NFATC1_NFAT_full_dimeric_14_1 SELEX + 127771926 127771939 4.0E-06 ATTTCCACTGAAAT 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 127771926 127771939 3.0E-06 ATTTCAGTGGAAAT 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 127770375 127770388 9.0E-06 AGATGACATCATAC 14 XBP1_bZIP_DBD_dimeric_14_1 SELEX - 127771277 127771290 4.0E-06 AGAGACACGTCAGT 14 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 127771920 127771933 1.0E-06 GTGGAAATTTCCAC 14 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 127771920 127771933 1.0E-06 GTGGAAATTTCCAC 14 Gfi_MA0038.1 JASPAR - 127769604 127769613 1.0E-06 TAAATCACTG 10 Gfi_MA0038.1 JASPAR + 127771935 127771944 7.0E-06 GAAATCACTG 10 SOX14_HMG_DBD_dimeric_13_1 SELEX - 127769694 127769706 1.0E-06 TCAGTACCATTGA 13 MAFK_bZIP_full_dimeric_15_1 SELEX + 127773440 127773454 4.0E-06 ATGCTGACTCAGTGC 15 PAX9_PAX_DBD_monomeric_17_1 SELEX - 127771357 127771373 8.0E-06 GGTCCCGCTTCAGCTCA 17 Myf_MA0055.1 JASPAR + 127769674 127769685 8.0E-06 AAACAACAGGAG 12 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 127773959 127773969 3.0E-06 ACTTGTAAAAC 11 SOX18_HMG_full_dimeric_15_3 SELEX - 127773923 127773937 7.0E-06 TTGAGTTTCAGTCAC 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 127773922 127773938 9.0E-06 TTTGAGTTTCAGTCACA 17 SRY_HMG_DBD_dimeric_13_1 SELEX - 127769694 127769706 1.0E-06 TCAGTACCATTGA 13 ETV6_ETS_full_dimeric_15_1 SELEX + 127771201 127771215 0.0E+00 CAGGAAGCGGAAGCG 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 127771812 127771823 9.0E-06 ATGATTAAAAAT 12 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 127770375 127770388 9.0E-06 AGATGACATCATAC 14 E2F2_E2F_DBD_dimeric_18_1 SELEX - 127771949 127771966 1.0E-05 CAAAGATGCTCCAAATAA 18 V_NFAT_Q4_01_M00935 TRANSFAC + 127771920 127771929 3.0E-06 GTGGAAATTT 10 V_NFAT_Q4_01_M00935 TRANSFAC - 127771924 127771933 3.0E-06 GTGGAAATTT 10 V_AP2ALPHA_Q6_M01857 TRANSFAC + 127771521 127771531 6.0E-06 TGCCCCCGGCC 11 V_AP1_Q2_M00173 TRANSFAC + 127770728 127770738 3.0E-06 AATGACTCAGA 11 V_AP1_Q2_M00173 TRANSFAC + 127773442 127773452 3.0E-06 GCTGACTCAGT 11 V_NFKB_Q6_01_M00774 TRANSFAC - 127771921 127771936 1.0E-05 TCAGTGGAAATTTCCA 16 V_AR_02_M00953 TRANSFAC - 127773469 127773495 3.0E-06 TAAGTGACAAAACTGTGTTCTTTAAAA 27 V_MAFB_05_M02775 TRANSFAC + 127773436 127773452 9.0E-06 AGGAATGCTGACTCAGT 17 V_MMEF2_Q6_M00405 TRANSFAC + 127771812 127771827 1.0E-06 ATGATTAAAAATGGCT 16 V_FOXJ1_04_M02854 TRANSFAC - 127771868 127771882 6.0E-06 AGAGCACAACTACAC 15 V_SP1_Q6_01_M00931 TRANSFAC - 127771234 127771243 4.0E-06 GGGGCGGGGC 10 V_ZTA_Q2_M00711 TRANSFAC - 127769659 127769671 4.0E-06 ACATTATGACACA 13 V_CEBP_01_M00159 TRANSFAC + 127771917 127771929 4.0E-06 TGTGTGGAAATTT 13 V_POU1F1_Q6_M00744 TRANSFAC + 127771812 127771821 8.0E-06 ATGATTAAAA 10 V_JUNDM2_03_M02772 TRANSFAC + 127770374 127770389 7.0E-06 TAGATGACATCATACC 16 V_JUNDM2_03_M02772 TRANSFAC - 127770374 127770389 4.0E-06 GGTATGATGTCATCTA 16 V_BARBIE_01_M00238 TRANSFAC - 127773312 127773326 0.0E+00 ATCCAAAGCTGGGGG 15 V_AP1_Q6_M00174 TRANSFAC + 127770728 127770738 6.0E-06 AATGACTCAGA 11 V_AP1_Q6_M00174 TRANSFAC + 127773442 127773452 2.0E-06 GCTGACTCAGT 11 V_ELF4_04_M02850 TRANSFAC - 127773463 127773479 8.0E-06 GTTCTTTAAAAACACTT 17 V_TST1_01_M00133 TRANSFAC + 127771811 127771825 4.0E-06 TATGATTAAAAATGG 15 V_TST1_01_M00133 TRANSFAC + 127775289 127775303 2.0E-06 GGTGAATTTAAATGC 15 V_TCF3_04_M02816 TRANSFAC - 127773984 127774000 8.0E-06 TCAAGAACAAAGAATGT 17 V_PR_Q2_M00960 TRANSFAC - 127773971 127773980 9.0E-06 AATAGAACAT 10 V_MYF_01_M01302 TRANSFAC + 127769674 127769685 8.0E-06 AAACAACAGGAG 12 V_PR_01_M00954 TRANSFAC - 127773469 127773495 3.0E-06 TAAGTGACAAAACTGTGTTCTTTAAAA 27 V_GFI1_01_M00250 TRANSFAC + 127771929 127771952 6.0E-06 TCCACTGAAATCACTGTGCTTTAT 24 V_NFAT_Q6_M00302 TRANSFAC - 127771924 127771935 8.0E-06 CAGTGGAAATTT 12 V_AMEF2_Q6_M00403 TRANSFAC + 127771812 127771829 0.0E+00 ATGATTAAAAATGGCTTC 18 V_AP1_Q6_01_M00925 TRANSFAC + 127770729 127770737 7.0E-06 ATGACTCAG 9 V_AP1_Q4_M00188 TRANSFAC + 127770728 127770738 7.0E-06 AATGACTCAGA 11 V_AP1_Q4_M00188 TRANSFAC + 127773442 127773452 7.0E-06 GCTGACTCAGT 11 V_SP1_Q6_M00196 TRANSFAC - 127771233 127771245 4.0E-06 GCGGGGCGGGGCC 13 V_MEF2_03_M00232 TRANSFAC - 127769567 127769588 1.0E-05 TCACTAGTTTAAAATATTTTTA 22 V_TATA_C_M00216 TRANSFAC - 127773468 127773477 3.0E-06 TCTTTAAAAA 10 V_XBP1_02_M01770 TRANSFAC - 127771280 127771290 6.0E-06 AGAGACACGTC 11 V_OCT1_04_M00138 TRANSFAC + 127769566 127769588 3.0E-06 ATAAAAATATTTTAAACTAGTGA 23 V_GR_Q6_M00192 TRANSFAC - 127773473 127773491 1.0E-06 TGACAAAACTGTGTTCTTT 19 V_TCF7_03_M02817 TRANSFAC - 127773984 127774000 1.0E-05 TCAAGAACAAAGAATGT 17 V_AP1_C_M00199 TRANSFAC + 127770729 127770737 6.0E-06 ATGACTCAG 9 V_MEF2_Q6_01_M00941 TRANSFAC - 127771816 127771827 4.0E-06 AGCCATTTTTAA 12 V_MAFK_Q3_M02022 TRANSFAC - 127773440 127773450 1.0E-06 TGAGTCAGCAT 11 V_ARID3A_04_M02735 TRANSFAC + 127771808 127771824 7.0E-06 CAGTATGATTAAAAATG 17 V_SMAD4_Q6_M00733 TRANSFAC + 127770606 127770620 1.0E-06 GTGAGGCAGACTACT 15 V_SOX11_03_M02795 TRANSFAC - 127773984 127774000 0.0E+00 TCAAGAACAAAGAATGT 17 V_ISGF4G_04_M02875 TRANSFAC - 127773460 127773473 2.0E-06 TAAAAACACTTCTA 14 V_FOXM1_01_M00630 TRANSFAC + 127772057 127772065 4.0E-06 AGATTGAGT 9 V_SP4_Q5_M01273 TRANSFAC + 127771234 127771244 2.0E-06 GCCCCGCCCCG 11 V_AP1_Q4_01_M00926 TRANSFAC - 127770729 127770736 1.0E-05 TGAGTCAT 8 V_VJUN_01_M00036 TRANSFAC + 127770374 127770389 5.0E-06 TAGATGACATCATACC 16 V_CREBP1CJUN_01_M00041 TRANSFAC - 127770873 127770880 1.0E-05 TGACGTTA 8 V_ZIC2_05_M02940 TRANSFAC + 127770776 127770790 1.0E-06 CTACTCAGCAGGTAA 15 V_TAL1_01_M01591 TRANSFAC + 127771848 127771860 5.0E-06 CTCCCTTCTCTTC 13 V_AP1FJ_Q2_M00172 TRANSFAC + 127773442 127773452 4.0E-06 GCTGACTCAGT 11 V_MYCMAX_B_M00322 TRANSFAC - 127771192 127771201 3.0E-06 GCCACGCGCG 10 V_ATF1_03_M02738 TRANSFAC - 127770374 127770389 8.0E-06 GGTATGATGTCATCTA 16 V_GFI1B_01_M01058 TRANSFAC - 127769602 127769613 1.0E-06 TAAATCACTGAT 12 V_CPHX_01_M01478 TRANSFAC - 127770373 127770386 6.0E-06 ATGATGTCATCTAA 14 V_FRA1_Q5_M01267 TRANSFAC - 127770729 127770736 1.0E-05 TGAGTCAT 8 V_ZABC1_01_M01306 TRANSFAC + 127770416 127770423 1.0E-05 ATTCCAAC 8 V_OCT1_07_M00248 TRANSFAC - 127775293 127775304 8.0E-06 TGCATTTAAATT 12 V_VMAF_01_M00035 TRANSFAC + 127773438 127773456 1.0E-06 GAATGCTGACTCAGTGCCT 19 V_NFE2_Q6_M02104 TRANSFAC - 127773437 127773452 1.0E-06 ACTGAGTCAGCATTCC 16 V_SOX18_04_M02905 TRANSFAC + 127775287 127775302 3.0E-06 ATGGTGAATTTAAATG 16 V_EKLF_Q5_M01874 TRANSFAC + 127770697 127770706 9.0E-06 CCACACCCAC 10 V_YY1_01_M00059 TRANSFAC - 127771814 127771830 4.0E-06 TGAAGCCATTTTTAATC 17 V_PR_02_M00957 TRANSFAC + 127773977 127774003 6.0E-06 TATTGTGACATTCTTTGTTCTTGAGTC 27 V_MEF2_01_M00006 TRANSFAC - 127773461 127773476 9.0E-06 CTTTAAAAACACTTCT 16 V_SP1_Q4_01_M00932 TRANSFAC - 127771233 127771245 6.0E-06 GCGGGGCGGGGCC 13 V_GFI1_Q6_01_M02010 TRANSFAC - 127771935 127771944 5.0E-06 CAGTGATTTC 10 V_ATF_B_M00338 TRANSFAC - 127770870 127770881 9.0E-06 TTGACGTTAGTG 12 V_RNF96_01_M01199 TRANSFAC - 127771322 127771331 7.0E-06 GCCCGCGGCC 10 V_GLIS2_04_M02863 TRANSFAC + 127771809 127771822 1.0E-06 AGTATGATTAAAAA 14 V_SMAD1_01_M01590 TRANSFAC - 127773987 127773998 1.0E-06 AAGAACAAAGAA 12 V_SOX9_Q4_M01284 TRANSFAC - 127772128 127772138 3.0E-06 ATACAAAGGGC 11 V_ZIC1_05_M02939 TRANSFAC + 127770776 127770790 2.0E-06 CTACTCAGCAGGTAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.