Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GNL2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29889 guanine nucleotide binding protein-like 2 (nucleolar) chr1 - 38061086 - 38066586 38061586 Transcription Factor Binding Sites   Download all TFBS in the GNL2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 9.0E-06 CTAATTAA 8 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 38065754 38065771 3.0E-06 GCCATTAGCTCTTAATTA 18 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 9.0E-06 CTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 Shox2_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 NKX6-2_homeodomain_full_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX - 38065765 38065772 9.0E-06 CTAATTAA 8 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 4.0E-06 ACTAATTAAG 10 SPIB_ETS_DBD_monomeric_14_1 SELEX - 38060589 38060602 2.0E-06 AAATACAGGAAGTG 14 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 5.0E-06 ACTAATTAAG 10 HOXA5_MA0158.1 JASPAR - 38065767 38065774 7.0E-06 CACTAATT 8 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 1.0E-05 ACTAATTAAG 10 SHOX_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 9.0E-06 CTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 7.0E-06 ACTAATTAAG 10 DLX6_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 NOTO_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 3.0E-06 ACTAATTAAG 10 SOX9_HMG_full_dimeric_16_3 SELEX - 38065692 38065707 6.0E-06 ATAAATATCAAGGCAT 16 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 DLX3_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 9.0E-06 CTAATTAA 8 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 38061397 38061411 1.0E-05 AAGTACAAAGGACGG 15 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 8.0E-06 ACTAATTAAG 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 38065754 38065771 3.0E-06 GCCATTAGCTCTTAATTA 18 LHX2_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 1.0E-06 ACTAATTAAG 10 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 3.0E-06 ACTAATTAAG 10 LHX9_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 ERF_ETS_DBD_monomeric_10_1 SELEX - 38060589 38060598 9.0E-06 ACAGGAAGTG 10 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 4.0E-06 ACTAATTAAG 10 Hltf_MA0109.1 JASPAR + 38061476 38061485 2.0E-06 AAACTTTTAT 10 MEOX1_homeodomain_full_monomeric_10_1 SELEX - 38065764 38065773 7.0E-06 ACTAATTAAG 10 GLI2_C2H2_DBD_monomeric_12_1 SELEX + 38061852 38061863 6.0E-06 CCGACCACACAG 12 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 6.0E-06 ACTAATTAAG 10 GSX1_homeodomain_DBD_monomeric_10_1 SELEX - 38065764 38065773 6.0E-06 ACTAATTAAG 10 ETV6_ETS_full_monomeric_10_1 SELEX - 38061550 38061559 1.0E-06 AGCGGAAGTG 10 SPI1_ETS_full_monomeric_14_1 SELEX - 38060589 38060602 2.0E-06 AAATACAGGAAGTG 14 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 5.0E-06 CTAATTAA 8 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 38065754 38065771 3.0E-06 GCCATTAGCTCTTAATTA 18 HMBOX1_homeodomain_DBD_monomeric_10_1 SELEX + 38061720 38061729 2.0E-06 CCTAGTTAAC 10 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX - 38065765 38065772 9.0E-06 CTAATTAA 8 LHX6_homeodomain_full_monomeric_10_1 SELEX - 38065764 38065773 7.0E-06 ACTAATTAAG 10 V_DMRT4_01_M01149 TRANSFAC + 38060568 38060580 4.0E-06 ACTGTTGCAATTA 13 V_RUSH1A_02_M01107 TRANSFAC + 38061476 38061485 2.0E-06 AAACTTTTAT 10 V_SPI1_01_M01203 TRANSFAC - 38060586 38060602 2.0E-06 AAATACAGGAAGTGGCC 17 V_ATF5_01_M01295 TRANSFAC + 38061892 38061902 1.0E-06 TCTCTTCCTTA 11 V_NF1_Q6_01_M00806 TRANSFAC - 38065675 38065691 5.0E-06 TTGGGGCAGAGCCAAGA 17 V_LRH1_Q5_01_M02098 TRANSFAC - 38061372 38061382 5.0E-06 GTCCAAGGCCA 11 V_RFX4_03_M02789 TRANSFAC + 38061681 38061695 8.0E-06 AGCCCTAGCAACCGC 15 V_RFX4_03_M02789 TRANSFAC + 38061706 38061720 7.0E-06 GTTCATAGCAACCGC 15 V_CART1_02_M01362 TRANSFAC - 38065760 38065776 7.0E-06 GGCACTAATTAAGAGCT 17 V_EAR2_Q2_M01728 TRANSFAC + 38061398 38061411 5.0E-06 CGTCCTTTGTACTT 14 V_LHX3_01_M01471 TRANSFAC - 38065760 38065776 7.0E-06 GGCACTAATTAAGAGCT 17 V_AFP1_Q6_M00616 TRANSFAC - 38060812 38060822 3.0E-06 ATTAACAAGAC 11 V_VAX2_01_M01327 TRANSFAC - 38065762 38065777 1.0E-06 CGGCACTAATTAAGAG 16 V_K2B_01_M01348 TRANSFAC - 38065760 38065776 2.0E-06 GGCACTAATTAAGAGCT 17 V_ALX4_02_M01417 TRANSFAC - 38065760 38065776 3.0E-06 GGCACTAATTAAGAGCT 17 V_CART1_03_M01453 TRANSFAC - 38065760 38065776 8.0E-06 GGCACTAATTAAGAGCT 17 V_CETS1P54_02_M00074 TRANSFAC - 38061869 38061881 4.0E-06 CTAACGGATATTT 13 V_ETS_Q4_M00771 TRANSFAC + 38061580 38061591 6.0E-06 AGCGACTTCCTG 12 V_SPIC_01_M02042 TRANSFAC - 38061550 38061559 9.0E-06 AGCGGAAGTG 10 V_COMP1_01_M00057 TRANSFAC - 38061238 38061261 1.0E-06 TGCTTAGAATGACTACGAGCGGGG 24 V_MECP2_01_M01298 TRANSFAC - 38065704 38065718 8.0E-06 CCGGCTGCAGCATAA 15 V_EN1_02_M01365 TRANSFAC - 38065762 38065777 3.0E-06 CGGCACTAATTAAGAG 16 V_TGIF_02_M01346 TRANSFAC + 38060576 38060592 9.0E-06 AATTATGACAGGCCACT 17 V_KROX_Q6_M00982 TRANSFAC + 38061625 38061638 1.0E-06 TCCGCCCCCGCTCC 14 V_SP1_Q6_M00196 TRANSFAC - 38061622 38061634 9.0E-06 CGGGGGCGGAGCC 13 V_EGR1_Q6_M01873 TRANSFAC - 38061626 38061635 4.0E-06 GCGGGGGCGG 10 V_PMX2A_01_M01444 TRANSFAC + 38065760 38065775 5.0E-06 AGCTCTTAATTAGTGC 16 V_PMX2A_01_M01444 TRANSFAC - 38065762 38065777 2.0E-06 CGGCACTAATTAAGAG 16 V_RFXDC2_03_M02790 TRANSFAC + 38061681 38061695 9.0E-06 AGCCCTAGCAACCGC 15 V_RFXDC2_03_M02790 TRANSFAC + 38061706 38061720 7.0E-06 GTTCATAGCAACCGC 15 V_SPIB_01_M01204 TRANSFAC - 38060586 38060602 3.0E-06 AAATACAGGAAGTGGCC 17 V_TEL2_Q6_M00678 TRANSFAC + 38060588 38060597 6.0E-06 CCACTTCCTG 10 V_HOXA5_03_M02271 TRANSFAC - 38065767 38065774 7.0E-06 CACTAATT 8 V_KLF7_03_M02773 TRANSFAC - 38065442 38065457 6.0E-06 TTGGCCCCACCCCCAA 16 V_CETS1P54_01_M00032 TRANSFAC - 38060589 38060598 9.0E-06 ACAGGAAGTG 10 V_CETS1P54_01_M00032 TRANSFAC - 38061583 38061592 9.0E-06 ACAGGAAGTC 10 V_PROP1_02_M01320 TRANSFAC - 38065760 38065776 2.0E-06 GGCACTAATTAAGAGCT 17 V_PMX2B_01_M01356 TRANSFAC + 38065760 38065776 9.0E-06 AGCTCTTAATTAGTGCC 17 V_PMX2B_01_M01356 TRANSFAC - 38065761 38065777 3.0E-06 CGGCACTAATTAAGAGC 17 V_SP3_Q3_M00665 TRANSFAC - 38061306 38061319 8.0E-06 AGTATAGGGAAGGG 14 V_TBP_06_M02814 TRANSFAC + 38065663 38065678 2.0E-06 TGAAAATATATATCTT 16 V_TGIF1_01_M03111 TRANSFAC + 38060576 38060592 9.0E-06 AATTATGACAGGCCACT 17 V_ELF1_Q6_M00746 TRANSFAC - 38060590 38060601 2.0E-06 AATACAGGAAGT 12 V_HOXB7_01_M01396 TRANSFAC + 38065762 38065777 3.0E-06 CTCTTAATTAGTGCCG 16 V_LRH1_Q5_M01142 TRANSFAC + 38061371 38061382 1.0E-06 CTGGCCTTGGAC 12 V_MAZR_01_M00491 TRANSFAC + 38065444 38065456 6.0E-06 GGGGGTGGGGCCA 13 V_GABPBETA_Q3_M01876 TRANSFAC - 38060588 38060598 5.0E-06 ACAGGAAGTGG 11 V_GABPBETA_Q3_M01876 TRANSFAC - 38061549 38061559 1.0E-06 AGCGGAAGTGA 11 V_MRG2_01_M01395 TRANSFAC - 38060577 38060592 8.0E-06 AGTGGCCTGTCATAAT 16 V_TCF1_06_M02815 TRANSFAC - 38061718 38061734 7.0E-06 TTCAGGTTAACTAGGCG 17 V_LMX1B_01_M01363 TRANSFAC + 38065760 38065776 8.0E-06 AGCTCTTAATTAGTGCC 17 V_HNF1B_01_M01425 TRANSFAC - 38061717 38061733 4.0E-06 TCAGGTTAACTAGGCGG 17 V_ALX4_03_M02944 TRANSFAC - 38065760 38065776 3.0E-06 GGCACTAATTAAGAGCT 17 V_SIX4_01_M01374 TRANSFAC - 38061879 38061895 1.0E-06 GAGAATGACACCTCCTA 17 V_ZFP281_01_M01597 TRANSFAC + 38065443 38065453 1.0E-06 TGGGGGTGGGG 11 V_R_01_M00273 TRANSFAC + 38061453 38061473 9.0E-06 AGGTCCGGCTTACGTGGTGAA 21 V_EGR1_06_M02744 TRANSFAC + 38061625 38061638 3.0E-06 TCCGCCCCCGCTCC 14 V_LEF1TCF1_Q4_M00978 TRANSFAC + 38061401 38061411 5.0E-06 CCTTTGTACTT 11 V_HB9_01_M01349 TRANSFAC + 38065762 38065777 1.0E-06 CTCTTAATTAGTGCCG 16 V_VDR_Q3_M00444 TRANSFAC - 38061274 38061288 8.0E-06 GGGGAAGGAGGGTTA 15 V_RFX3_04_M02788 TRANSFAC + 38061677 38061699 3.0E-06 CTCCAGCCCTAGCAACCGCCAAG 23 V_LHX9_01_M01367 TRANSFAC - 38065760 38065776 5.0E-06 GGCACTAATTAAGAGCT 17 V_HOXA7_03_M01394 TRANSFAC - 38065760 38065775 1.0E-05 GCACTAATTAAGAGCT 16 V_HOXA7_03_M01394 TRANSFAC + 38065762 38065777 8.0E-06 CTCTTAATTAGTGCCG 16 V_UF1H3BETA_Q6_M01068 TRANSFAC + 38065441 38065454 5.0E-06 CTTGGGGGTGGGGC 14 V_LHX5_01_M01353 TRANSFAC - 38065760 38065776 8.0E-06 GGCACTAATTAAGAGCT 17 V_OG2_02_M01441 TRANSFAC - 38065760 38065776 5.0E-06 GGCACTAATTAAGAGCT 17 V_MAFK_04_M02880 TRANSFAC - 38060570 38060584 8.0E-06 GTCATAATTGCAACA 15 V_SOX9_Q4_M01284 TRANSFAC - 38061399 38061409 4.0E-06 GTACAAAGGAC 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.