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RPUSD3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 285367 RNA pseudouridylate synthase domain containing 3 chr3 - 9885202 - 9890702 9885702 Transcription Factor Binding Sites   Download all TFBS in the RPUSD3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU2F1_POU_DBD_dimeric_14_1 SELEX - 9886678 9886691 5.0E-06 TATACATATATATA 14 ZNF306_C2H2_full_monomeric_14_1 SELEX + 9885400 9885413 9.0E-06 TGGGCTGACCTCGA 14 POU3F4_POU_DBD_monomeric_11_1 SELEX + 9885928 9885938 8.0E-06 TGCAAAAATTA 11 SOX8_HMG_full_dimeric_17_1 SELEX + 9885302 9885318 5.0E-06 AAGCAATGGGAGTCATT 17 POU1F1_POU_DBD_monomeric_14_1 SELEX - 9884936 9884949 5.0E-06 AAGATGCAAATAAC 14 NFYA_MA0060.1 JASPAR - 9885735 9885750 2.0E-06 GCTGACCAATCAGCGC 16 PAX1_PAX_DBD_monomeric_17_1 SELEX + 9885542 9885558 8.0E-06 CGTCCCGCATGAGAGAG 17 Pax4_MA0068.1 JASPAR + 9886614 9886643 4.0E-06 AAAAAAAAGAATAATATAATGACTGCCCAC 30 Pax4_MA0068.1 JASPAR + 9886622 9886651 3.0E-06 GAATAATATAATGACTGCCCACATTCCTAC 30 TEAD1_TEA_full_monomeric_10_1 SELEX + 9886641 9886650 5.0E-06 CACATTCCTA 10 POU3F3_POU_DBD_monomeric_13_1 SELEX - 9884937 9884949 4.0E-06 AAGATGCAAATAA 13 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 9884869 9884879 6.0E-06 GCCAATAAACA 11 znf143_MA0088.1 JASPAR - 9884974 9884993 9.0E-06 TTTTAACCCTACTGCCATGA 20 SP4_C2H2_full_monomeric_17_1 SELEX - 9885793 9885809 4.0E-06 AAAGCCCCGCCTCCTCA 17 CTCF_C2H2_full_monomeric_17_1 SELEX - 9890642 9890658 8.0E-06 GACGCCATCTACAGGCA 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 9884870 9884879 4.0E-06 CCAATAAACA 10 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 9889789 9889796 1.0E-05 ACATTCCA 8 Pou5f1_MA0142.1 JASPAR + 9890603 9890617 8.0E-06 TTTTAATTTGGAAAT 15 POU2F1_POU_DBD_monomeric_12_1 SELEX - 9884938 9884949 1.0E-05 AAGATGCAAATA 12 NR3C1_MA0113.1 JASPAR + 9885871 9885888 7.0E-06 CAGAAGAATTTGATCTGA 18 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 9886641 9886650 9.0E-06 CACATTCCTA 10 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 9889788 9889797 8.0E-06 GACATTCCAT 10 DPRX_homeodomain_DBD_monomeric_11_1 SELEX - 9890627 9890637 6.0E-06 AAGATAATCTC 11 FOXL1_MA0033.1 JASPAR + 9886678 9886685 9.0E-06 TATATATA 8 FOXL1_MA0033.1 JASPAR - 9886678 9886685 9.0E-06 TATATATA 8 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 9884871 9884884 5.0E-06 CAATAAACAATAAT 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 9884870 9884879 5.0E-06 CCAATAAACA 10 V_AP1_Q2_M00173 TRANSFAC - 9886658 9886668 7.0E-06 AATGACTAATT 11 V_NFY_Q6_M00185 TRANSFAC - 9885738 9885748 2.0E-06 TGACCAATCAG 11 V_CEBP_Q3_M00770 TRANSFAC - 9885926 9885937 1.0E-06 AATTTTTGCAAA 12 V_CEBP_Q3_M00770 TRANSFAC + 9890606 9890617 2.0E-06 TAATTTGGAAAT 12 V_POU5F1_02_M02245 TRANSFAC + 9890603 9890617 8.0E-06 TTTTAATTTGGAAAT 15 V_MAFB_03_M02879 TRANSFAC + 9885924 9885938 1.0E-06 CCTTTGCAAAAATTA 15 V_OCT1_Q5_01_M00930 TRANSFAC + 9884937 9884947 7.0E-06 TTATTTGCATC 11 V_CEBP_01_M00159 TRANSFAC + 9890607 9890619 4.0E-06 AATTTGGAAATGT 13 V_FOXJ1_03_M02750 TRANSFAC + 9884870 9884885 5.0E-06 CCAATAAACAATAATC 16 V_NR3C1_01_M02219 TRANSFAC + 9885871 9885888 7.0E-06 CAGAAGAATTTGATCTGA 18 V_CEBPB_01_M00109 TRANSFAC + 9890606 9890619 6.0E-06 TAATTTGGAAATGT 14 V_AP1_Q6_M00174 TRANSFAC - 9886658 9886668 4.0E-06 AATGACTAATT 11 V_NFY_C_M00209 TRANSFAC + 9885737 9885750 2.0E-06 GCTGATTGGTCAGC 14 V_SOX13_03_M02797 TRANSFAC + 9886668 9886683 1.0E-06 TGTGAAACAATATATA 16 V_GC_01_M00255 TRANSFAC + 9885795 9885808 0.0E+00 AGGAGGCGGGGCTT 14 V_SOX7_03_M02807 TRANSFAC + 9884869 9884890 3.0E-06 GCCAATAAACAATAATCTAGTA 22 V_SOX7_03_M02807 TRANSFAC + 9886666 9886687 2.0E-06 ATTGTGAAACAATATATATATG 22 V_POU3F2_01_M00463 TRANSFAC - 9886677 9886690 3.0E-06 ATACATATATATAT 14 V_ZFP105_03_M02827 TRANSFAC + 9884869 9884883 5.0E-06 GCCAATAAACAATAA 15 V_HOXB13_01_M01467 TRANSFAC + 9884867 9884882 9.0E-06 CGGCCAATAAACAATA 16 V_GATA3_05_M02859 TRANSFAC + 9885875 9885896 7.0E-06 AGAATTTGATCTGATCAAAAAA 22 V_AP1_Q4_M00188 TRANSFAC - 9886658 9886668 4.0E-06 AATGACTAATT 11 V_SP1_Q6_M00196 TRANSFAC + 9885795 9885807 6.0E-06 AGGAGGCGGGGCT 13 V_EVI1_01_M00078 TRANSFAC - 9890626 9890641 9.0E-06 AGAGAAGATAATCTCA 16 V_EVI1_01_M00078 TRANSFAC - 9890631 9890646 2.0E-06 AGGCAAGAGAAGATAA 16 V_OCT1_04_M00138 TRANSFAC - 9886670 9886692 9.0E-06 CTATACATATATATATTGTTTCA 23 V_OCT1_04_M00138 TRANSFAC + 9886677 9886699 4.0E-06 ATATATATATGTATAGGTTTCCT 23 V_XFD2_01_M00268 TRANSFAC + 9884870 9884883 3.0E-06 CCAATAAACAATAA 14 V_POU6F1_01_M00465 TRANSFAC + 9885929 9885939 1.0E-06 GCAAAAATTAT 11 V_TBP_06_M02814 TRANSFAC + 9886674 9886689 0.0E+00 ACAATATATATATGTA 16 V_TBP_06_M02814 TRANSFAC - 9886674 9886689 3.0E-06 TACATATATATATTGT 16 V_TBP_06_M02814 TRANSFAC + 9886676 9886691 7.0E-06 AATATATATATGTATA 16 V_TBP_06_M02814 TRANSFAC - 9886676 9886691 1.0E-05 TATACATATATATATT 16 V_CTCF_02_M01259 TRANSFAC + 9890638 9890657 3.0E-06 CTCTTGCCTGTAGATGGCGT 20 V_OCT_Q6_M00795 TRANSFAC + 9884937 9884947 5.0E-06 TTATTTGCATC 11 V_IRX5_01_M01472 TRANSFAC + 9886678 9886694 7.0E-06 TATATATATGTATAGGT 17 V_SOX15_03_M02799 TRANSFAC + 9886668 9886684 0.0E+00 TGTGAAACAATATATAT 17 V_NFYC_Q5_M02107 TRANSFAC - 9885735 9885748 3.0E-06 TGACCAATCAGCGC 14 V_POU5F1_01_M01307 TRANSFAC - 9884938 9884947 9.0E-06 GATGCAAATA 10 V_OCT1_Q6_M00195 TRANSFAC - 9884936 9884950 0.0E+00 GAAGATGCAAATAAC 15 V_MYOGNF1_01_M00056 TRANSFAC + 9890598 9890626 2.0E-06 TGTTCTTTTAATTTGGAAATGTCTAAAGT 29 V_CPHX_01_M01478 TRANSFAC - 9885879 9885892 1.0E-06 TTGATCAGATCAAA 14 V_CPHX_01_M01478 TRANSFAC + 9885880 9885893 1.0E-06 TTGATCTGATCAAA 14 V_NFY_01_M00287 TRANSFAC - 9885735 9885750 1.0E-06 GCTGACCAATCAGCGC 16 V_MTATA_B_M00320 TRANSFAC - 9889770 9889786 3.0E-06 CGGTATAAAACCCGATT 17 V_FOX_Q2_M00809 TRANSFAC - 9884870 9884882 7.0E-06 TATTGTTTATTGG 13 V_SOX21_04_M02907 TRANSFAC - 9886667 9886683 5.0E-06 TATATATTGTTTCACAA 17 V_IRX2_01_M01405 TRANSFAC + 9886678 9886694 9.0E-06 TATATATATGTATAGGT 17 V_SOX8_03_M02808 TRANSFAC - 9884871 9884887 8.0E-06 TAGATTATTGTTTATTG 17 V_SOX8_03_M02808 TRANSFAC - 9886668 9886684 2.0E-06 ATATATATTGTTTCACA 17 V_FOXJ2_01_M00422 TRANSFAC + 9884867 9884884 6.0E-06 CGGCCAATAAACAATAAT 18 V_SIX6_08_M02897 TRANSFAC + 9886674 9886690 4.0E-06 ACAATATATATATGTAT 17 V_SRY_05_M02917 TRANSFAC + 9884870 9884886 3.0E-06 CCAATAAACAATAATCT 17 V_SRY_05_M02917 TRANSFAC + 9886667 9886683 1.0E-06 TTGTGAAACAATATATA 17 V_NFYA_Q5_M02106 TRANSFAC - 9885735 9885748 3.0E-06 TGACCAATCAGCGC 14 V_IRXB3_01_M01377 TRANSFAC - 9886677 9886693 6.0E-06 CCTATACATATATATAT 17 V_IRXB3_01_M01377 TRANSFAC + 9886678 9886694 3.0E-06 TATATATATGTATAGGT 17 V_EVI1_03_M00080 TRANSFAC - 9890631 9890641 4.0E-06 AGAGAAGATAA 11 V_PAX4_04_M00380 TRANSFAC + 9886614 9886643 6.0E-06 AAAAAAAAGAATAATATAATGACTGCCCAC 30 V_PAX4_04_M00380 TRANSFAC + 9886617 9886646 6.0E-06 AAAAAGAATAATATAATGACTGCCCACATT 30 V_PAX4_04_M00380 TRANSFAC + 9886619 9886648 2.0E-06 AAAGAATAATATAATGACTGCCCACATTCC 30 V_CEBPA_Q6_M01866 TRANSFAC - 9885925 9885937 7.0E-06 AATTTTTGCAAAG 13 V_OCT4_01_M01125 TRANSFAC + 9890603 9890617 6.0E-06 TTTTAATTTGGAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.