Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PTPN23 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 25930 protein tyrosine phosphatase, non-receptor type 23 chr3 + 47417490 - 47422990 47422490 Transcription Factor Binding Sites   Download all TFBS in the PTPN23 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 47418072 47418090 7.0E-06 TCATCACGAGGGGGCAGCA 19 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 47422177 47422190 6.0E-06 AAGTTCATAGGTGA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 47426701 47426717 7.0E-06 ATAAAGAACTTCAAACA 17 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 47422177 47422190 9.0E-06 AAGTTCATAGGTGA 14 EWSR1-FLI1_MA0149.1 JASPAR - 47418881 47418898 1.0E-06 GGAAGTGAGAGAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 47422676 47422693 4.0E-06 GGGAAGATGGAAGGCAAG 18 SPIB_ETS_DBD_monomeric_14_1 SELEX - 47422950 47422963 3.0E-06 AGAAGGAGGAAGTG 14 Klf4_MA0039.2 JASPAR - 47426539 47426548 2.0E-06 TGGGTGTGGC 10 ZNF524_C2H2_full_dimeric_12_1 SELEX + 47422965 47422976 8.0E-06 ACGCTCGGACCC 12 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 47421251 47421264 5.0E-06 CTTATCAGTAAACA 14 SP1_MA0079.2 JASPAR + 47422989 47422998 9.0E-06 CCCCTCCTCC 10 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX + 47422116 47422128 1.0E-06 CGCCACGTCATCT 13 Gfi_MA0038.1 JASPAR - 47426677 47426686 4.0E-06 CAAATCACTC 10 SRY_MA0084.1 JASPAR + 47421717 47421725 5.0E-06 TTTAACAAT 9 SP4_C2H2_full_monomeric_17_1 SELEX - 47422502 47422518 6.0E-06 CCAGCCCCGCCCCTTCG 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 47422177 47422190 4.0E-06 AAGTTCATAGGTGA 14 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 47422640 47422654 1.0E-06 TGGAAGTGAAAGTCA 15 ERF_ETS_DBD_monomeric_10_1 SELEX - 47418892 47418901 9.0E-06 ACAGGAAGTG 10 CREB3L1_bZIP_full_dimeric_14_1 SELEX + 47422115 47422128 2.0E-06 CCGCCACGTCATCT 14 Myf_MA0055.1 JASPAR + 47422533 47422544 2.0E-06 CAGCAGCTGCAG 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 47421352 47421367 9.0E-06 GGAGACAAAAGTATCA 16 ELF5_ETS_full_monomeric_11_1 SELEX - 47418892 47418902 6.0E-06 AACAGGAAGTG 11 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 47426569 47426579 1.0E-05 TTTCCCCACTA 11 SPI1_ETS_full_monomeric_14_1 SELEX - 47422950 47422963 5.0E-06 AGAAGGAGGAAGTG 14 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 47421842 47421855 9.0E-06 CTTCCCCACAGGGC 14 ETV6_ETS_full_dimeric_15_1 SELEX - 47418892 47418906 2.0E-06 CTGGAACAGGAAGTG 15 NRF1_NRF_full_dimeric_12_1 SELEX + 47422378 47422389 4.0E-06 TGAGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 47422378 47422389 3.0E-06 TGCGCATGCTCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 47422398 47422409 1.0E-05 TGCGCAGGCGCT 12 E2F3_E2F_DBD_dimeric_18_3 SELEX - 47421356 47421373 5.0E-06 TATTTTGGAGACAAAAGT 18 Zfx_MA0146.1 JASPAR + 47421105 47421118 5.0E-06 CCCGCCTCGGCCTC 14 V_CEBPG_Q6_M00622 TRANSFAC + 47421683 47421695 1.0E-06 TTTATTTCTAAAA 13 V_CEBPG_Q6_M00622 TRANSFAC + 47421713 47421725 6.0E-06 ATGATTTAACAAT 13 V_CEBPG_Q6_M00622 TRANSFAC - 47426563 47426575 9.0E-06 CCCACTAAAAAAT 13 V_KLF15_Q2_M01714 TRANSFAC - 47422984 47422997 6.0E-06 GAGGAGGGGCGGGG 14 V_SPI1_01_M01203 TRANSFAC - 47422947 47422963 4.0E-06 AGAAGGAGGAAGTGTGC 17 V_DBX1_01_M01483 TRANSFAC + 47421680 47421696 1.0E-05 TTATTTATTTCTAAAAG 17 V_BCL6_Q3_01_M02085 TRANSFAC + 47422202 47422211 4.0E-06 CTTCCTAGGA 10 V_FLI1_Q6_M01208 TRANSFAC - 47418890 47418900 2.0E-06 CAGGAAGTGAG 11 V_FLI1_Q6_M01208 TRANSFAC - 47422489 47422499 2.0E-06 CCGGAAGTCAC 11 V_FXR_Q3_M00631 TRANSFAC - 47427453 47427466 1.0E-06 CAAGGGCAGTGACC 14 V_MTF1_Q4_M00650 TRANSFAC + 47423056 47423069 5.0E-06 GCTGCGCCCGGCCC 14 V_ETS_B_M00340 TRANSFAC - 47418889 47418902 1.0E-06 AACAGGAAGTGAGA 14 V_HOXA3_01_M00395 TRANSFAC + 47426559 47426567 7.0E-06 CGTAATTTT 9 V_IK_Q5_M01169 TRANSFAC - 47421114 47421123 3.0E-06 TTTGGGAGGC 10 V_SOX5_01_M00042 TRANSFAC + 47421718 47421727 9.0E-06 TTAACAATTC 10 V_SP1_Q6_01_M00931 TRANSFAC + 47422506 47422515 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 47422983 47422992 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC + 47421683 47421704 4.0E-06 TTTATTTCTAAAAGTAGGTGAT 22 V_IRF_Q6_01_M00972 TRANSFAC - 47422643 47422653 4.0E-06 GGAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 47422640 47422655 2.0E-06 CTGGAAGTGAAAGTCA 16 V_GCNF_Q3_M02009 TRANSFAC - 47421199 47421208 9.0E-06 CGAGGTCAAG 10 V_P50P50_Q3_M01223 TRANSFAC - 47427479 47427491 1.0E-06 AAGGGAATTCCAG 12 V_AP2_Q6_01_M00915 TRANSFAC + 47422834 47422846 9.0E-06 GCGCCCGCAGGCC 13 V_HNF3_Q6_01_M01012 TRANSFAC - 47426812 47426829 5.0E-06 ATAACTATTTGTTCAATG 18 V_MAF_Q6_M00648 TRANSFAC - 47422946 47422961 0.0E+00 AAGGAGGAAGTGTGCT 16 V_GABPA_04_M02858 TRANSFAC + 47422684 47422699 0.0E+00 CCATCTTCCCCCCTAT 16 V_SP1_03_M02281 TRANSFAC + 47422989 47422998 9.0E-06 CCCCTCCTCC 10 V_HFH4_01_M00742 TRANSFAC + 47423182 47423194 6.0E-06 GAGGGTTTGTTTT 13 V_GKLF_02_M01588 TRANSFAC + 47426539 47426550 0.0E+00 GCCACACCCAGC 12 V_HTF_01_M00538 TRANSFAC + 47426548 47426571 3.0E-06 AGCCAGACCCACGTAATTTTTTAG 24 V_PU1_Q4_M01172 TRANSFAC + 47418886 47418904 1.0E-06 CTCTCTCACTTCCTGTTCC 19 V_LYF1_01_M00141 TRANSFAC - 47421115 47421123 9.0E-06 TTTGGGAGG 9 V_HBP1_Q2_M01661 TRANSFAC - 47426810 47426818 3.0E-06 TTCAATGAA 9 V_HES1_Q6_M02011 TRANSFAC - 47422518 47422527 6.0E-06 GCCACGAGCC 10 V_RPC155_01_M01798 TRANSFAC - 47421075 47421090 0.0E+00 CCGGGAGTTCAAGACC 16 V_ETS_Q4_M00771 TRANSFAC + 47418889 47418900 3.0E-06 TCTCACTTCCTG 12 V_GC_01_M00255 TRANSFAC + 47422504 47422517 0.0E+00 AAGGGGCGGGGCTG 14 V_MYF_01_M01302 TRANSFAC + 47422533 47422544 2.0E-06 CAGCAGCTGCAG 12 V_GCM1_04_M02862 TRANSFAC - 47422688 47422704 1.0E-06 GGCGGATAGGGGGGAAG 17 V_SP1_Q6_M00196 TRANSFAC + 47422504 47422516 1.0E-06 AAGGGGCGGGGCT 13 V_ARID3A_02_M02839 TRANSFAC - 47421347 47421361 3.0E-06 AAAAGTATCAGAACT 15 V_IRF3_Q3_M01279 TRANSFAC + 47421242 47421254 3.0E-06 TTGTTTTCCCTTA 13 V_IRF3_Q3_M01279 TRANSFAC + 47422640 47422652 9.0E-06 TGACTTTCACTTC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 47422985 47422998 1.0E-05 GGAGGAGGGGCGGG 14 V_HNF3_Q6_M00791 TRANSFAC + 47426814 47426826 2.0E-06 TTGAACAAATAGT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 47426814 47426824 4.0E-06 TATTTGTTCAA 11 V_IRF_Q6_M00772 TRANSFAC + 47422639 47422653 1.0E-06 GTGACTTTCACTTCC 15 V_GADP_01_M01258 TRANSFAC + 47418892 47418903 5.0E-06 CACTTCCTGTTC 12 V_REST_01_M01256 TRANSFAC - 47422386 47422407 4.0E-06 CGCAGGCGCTGTCCCTGTTGCG 22 V_HBP1_03_M02762 TRANSFAC - 47426802 47426817 0.0E+00 TCAATGAATGAATCAG 16 V_HBP1_03_M02762 TRANSFAC - 47426806 47426821 0.0E+00 TTGTTCAATGAATGAA 16 V_MEF2_04_M00233 TRANSFAC + 47421683 47421704 3.0E-06 TTTATTTCTAAAAGTAGGTGAT 22 V_TEL2_Q6_M00678 TRANSFAC + 47418891 47418900 4.0E-06 TCACTTCCTG 10 V_KLF7_03_M02773 TRANSFAC - 47422503 47422518 9.0E-06 CCAGCCCCGCCCCTTC 16 V_CETS1P54_01_M00032 TRANSFAC - 47418892 47418901 9.0E-06 ACAGGAAGTG 10 V_BLIMP1_Q6_M01066 TRANSFAC - 47422640 47422655 0.0E+00 CTGGAAGTGAAAGTCA 16 V_ELK1_01_M00007 TRANSFAC - 47418889 47418904 1.0E-06 GGAACAGGAAGTGAGA 16 V_CETS1P54_03_M01078 TRANSFAC - 47418889 47418904 5.0E-06 GGAACAGGAAGTGAGA 16 V_SP4_Q5_M01273 TRANSFAC - 47422505 47422515 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 47422983 47422993 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC - 47418893 47418904 3.0E-06 GGAACAGGAAGT 12 V_ELF1_Q6_M00746 TRANSFAC - 47422951 47422962 7.0E-06 GAAGGAGGAAGT 12 V_GCNF_01_M00526 TRANSFAC - 47421072 47421089 9.0E-06 CGGGAGTTCAAGACCAGC 18 V_GCNF_01_M00526 TRANSFAC - 47421193 47421210 3.0E-06 CTCGAGGTCAAGGCCTTT 18 V_GCNF_01_M00526 TRANSFAC - 47426749 47426766 1.0E-05 CTTGAGCTCAAGTACAGC 18 V_LRH1_Q5_M01142 TRANSFAC + 47426585 47426596 1.0E-05 CTGGCCTTGCAT 12 V_GABPBETA_Q3_M01876 TRANSFAC - 47418891 47418901 1.0E-06 ACAGGAAGTGA 11 V_SMAD4_04_M02898 TRANSFAC + 47422980 47422996 7.0E-06 TCTGCCCCGCCCCTCCT 17 V_FOXL1_02_M02857 TRANSFAC - 47423184 47423199 2.0E-06 ATTGTAAAACAAACCC 16 NR1H2_RXRA_MA0115.1 JASPAR + 47422176 47422192 2.0E-06 CAAGTTCATAGGTGAGG 17 V_ZFP206_01_M01742 TRANSFAC - 47422379 47422389 3.0E-06 TGCGCATGCTC 11 V_ZFP206_01_M01742 TRANSFAC - 47422399 47422409 1.0E-06 TGCGCAGGCGC 11 V_BDP1_01_M01796 TRANSFAC + 47421075 47421086 2.0E-06 GGTCTTGAACTC 12 V_FPM315_01_M01587 TRANSFAC + 47422210 47422221 3.0E-06 GAGGGAGGAGCG 12 V_ASCL2_04_M02841 TRANSFAC + 47422343 47422358 3.0E-06 TCCTCCCCGCCCTACT 16 V_ETS1_B_M00339 TRANSFAC - 47418887 47418901 1.0E-06 ACAGGAAGTGAGAGA 15 V_ZFP281_01_M01597 TRANSFAC - 47422989 47422999 7.0E-06 TGGAGGAGGGG 11 V_BBX_03_M02739 TRANSFAC + 47426807 47426821 0.0E+00 TCATTCATTGAACAA 15 V_BBX_03_M02739 TRANSFAC - 47426807 47426821 1.0E-06 TTGTTCAATGAATGA 15 V_IRF1_Q6_01_M01881 TRANSFAC + 47427424 47427437 6.0E-06 AACTTTCAGCTTCT 14 V_TBX22_01_M01195 TRANSFAC - 47426785 47426803 8.0E-06 AGGGATGAACGTAACAGCT 19 V_E2F_01_M00024 TRANSFAC - 47422082 47422096 5.0E-06 ATGACGCGAAAACGG 15 V_E2F_01_M00024 TRANSFAC + 47422362 47422376 8.0E-06 TCCGCGCGAAGAAGA 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 47418881 47418898 1.0E-06 GGAAGTGAGAGAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 47422676 47422693 4.0E-06 GGGAAGATGGAAGGCAAG 18 V_FOXJ2_01_M00422 TRANSFAC + 47426812 47426829 6.0E-06 CATTGAACAAATAGTTAT 18 V_SATB1_01_M01232 TRANSFAC - 47421684 47421695 0.0E+00 TTTTAGAAATAA 12 V_EKLF_Q5_M01874 TRANSFAC + 47426540 47426549 5.0E-06 CCACACCCAG 10 V_PPARG_02_M00515 TRANSFAC + 47422665 47422687 5.0E-06 AAGAAGGTGAGCTTGCCTTCCAT 23 V_PAX4_02_M00377 TRANSFAC - 47426559 47426569 1.0E-06 AAAAAATTACG 11 V_SP1_Q2_01_M00933 TRANSFAC - 47422505 47422514 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 47422984 47422993 7.0E-06 CCCCGCCCCT 10 V_GATA5_03_M02756 TRANSFAC - 47421246 47421262 0.0E+00 TTTACTGATAAGGGAAA 17 V_RXRLXRB_01_M01198 TRANSFAC + 47422178 47422190 5.0E-06 AGTTCATAGGTGA 13 V_SOX5_07_M02909 TRANSFAC - 47421715 47421731 3.0E-06 GCAGGAATTGTTAAATC 17 V_GATA1_02_M00126 TRANSFAC - 47421248 47421261 1.0E-06 TTACTGATAAGGGA 14 V_P300_01_M00033 TRANSFAC - 47418888 47418901 6.0E-06 ACAGGAAGTGAGAG 14 V_SP1_Q4_01_M00932 TRANSFAC + 47422504 47422516 0.0E+00 AAGGGGCGGGGCT 13 V_ELK1_03_M01163 TRANSFAC - 47418892 47418902 1.0E-05 AACAGGAAGTG 11 V_CDPCR3_01_M00105 TRANSFAC + 47426817 47426831 3.0E-06 AACAAATAGTTATTG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.