Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SPDEF Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 25803 SAM pointed domain containing ets transcription factor chr6 - 34523610 - 34529110 34524110 SPDEF_ETS_full_putative-multimer_15_1 SPDEF_ETS_full_monomeric_11_1 SPDEF_ETS_full_putative-multimer_16_1 V_SPDEF_04_M02915 V_PDEF_02_M02075 V_SPDEF_03_M02811 V_PDEF_01_M02040 Transcription Factor Binding Sites   Download all TFBS in the SPDEF promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR + 34522596 34522607 8.0E-06 TGTTTGCTTTGT 12 GABPA_MA0062.2 JASPAR + 34528533 34528543 9.0E-06 GCGGAAGTGGA 11 SPIC_ETS_full_monomeric_14_1 SELEX - 34524141 34524154 7.0E-06 TAAATAAGGAAGGA 14 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 34528834 34528844 3.0E-06 AGCCTGAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 34528834 34528844 1.0E-06 AGCCTCAGGCT 11 EWSR1-FLI1_MA0149.1 JASPAR - 34528588 34528605 7.0E-06 GCTAGGAAGGCAGGAATC 18 EWSR1-FLI1_MA0149.1 JASPAR - 34528592 34528609 3.0E-06 GAAAGCTAGGAAGGCAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 34528596 34528613 1.0E-06 GAAAGAAAGCTAGGAAGG 18 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 34525239 34525256 1.0E-05 GGAGGTAACACAAGGTCC 18 RUNX3_RUNX_DBD_dimeric_16_1 SELEX + 34524177 34524192 7.0E-06 TTACCTCAGACCACAG 16 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 34528477 34528494 8.0E-06 AAGGTCAGCAGGGCAAGC 18 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 34528834 34528844 6.0E-06 AGCCTGAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 34528834 34528844 1.0E-06 AGCCTCAGGCT 11 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 34528812 34528826 1.0E-05 TGCCCCCTGCTGAGG 15 RUNX2_RUNX_DBD_dimeric_16_1 SELEX + 34524177 34524192 9.0E-06 TTACCTCAGACCACAG 16 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 34529053 34529069 7.0E-06 AAGTCCACAGGGGGTCA 17 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 34522618 34522627 9.0E-06 ACCAGCTGCT 10 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 34529053 34529069 4.0E-06 AAGTCCACAGGGGGTCA 17 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 34528479 34528494 7.0E-06 AAGGTCAGCAGGGCAA 16 FEV_MA0156.1 JASPAR + 34522663 34522670 1.0E-05 CAGGAAAT 8 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 34528834 34528844 2.0E-06 AGCCTGAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 34528834 34528844 1.0E-06 AGCCTCAGGCT 11 ETV6_ETS_full_monomeric_10_1 SELEX + 34528532 34528541 1.0E-06 AGCGGAAGTG 10 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 34528834 34528844 2.0E-06 AGCCTGAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 34528834 34528844 1.0E-06 AGCCTCAGGCT 11 ZIC1_C2H2_full_monomeric_14_1 SELEX + 34528812 34528825 2.0E-06 TGCCCCCTGCTGAG 14 V_AP1_Q2_M00173 TRANSFAC - 34528567 34528577 1.0E-06 ACTGACTCAGA 11 V_GEN_INI_B_M00315 TRANSFAC - 34522667 34522674 1.0E-05 CCTCATTT 8 V_SMAD3_Q6_01_M01888 TRANSFAC + 34524084 34524096 9.0E-06 AGTCAGACAGCCG 13 V_FOXA2_04_M02749 TRANSFAC - 34524144 34524160 8.0E-06 TTCAGGTAAATAAGGAA 17 V_LMAF_Q2_M01139 TRANSFAC - 34528484 34528492 6.0E-06 GGTCAGCAG 9 V_GABP_B_M00341 TRANSFAC + 34528532 34528543 4.0E-06 AGCGGAAGTGGA 12 V_P53_DECAMER_Q2_M00761 TRANSFAC + 34522672 34522681 7.0E-06 AGGCAAGTCC 10 V_HNF3_Q6_01_M01012 TRANSFAC + 34522591 34522608 6.0E-06 ACGCCTGTTTGCTTTGTT 18 V_NKX24_01_M01350 TRANSFAC - 34528519 34528534 2.0E-06 GCTGCCACTTGACATT 16 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 34522747 34522762 1.0E-06 CATGGCCTGGGTGTGG 16 V_AP4_Q6_01_M00927 TRANSFAC - 34522619 34522627 6.0E-06 ACCAGCTGC 9 V_SPIC_01_M02042 TRANSFAC + 34528532 34528541 9.0E-06 AGCGGAAGTG 10 V_TAL1_Q6_M00993 TRANSFAC + 34528618 34528627 8.0E-06 TCCATCTGCC 10 V_GC_01_M00255 TRANSFAC - 34528753 34528766 4.0E-06 TGGGGGTGGGGCCT 14 V_GEN_INI3_B_M00314 TRANSFAC - 34522667 34522674 1.0E-05 CCTCATTT 8 V_FREAC3_01_M00291 TRANSFAC - 34524145 34524160 2.0E-06 TTCAGGTAAATAAGGA 16 V_ZFP410_03_M02832 TRANSFAC + 34528691 34528707 5.0E-06 AAGGCTGGGATGTATGC 17 V_NKX26_01_M01322 TRANSFAC - 34528519 34528534 4.0E-06 GCTGCCACTTGACATT 16 V_ZBP89_Q4_M01816 TRANSFAC - 34528802 34528811 4.0E-06 CCCTCCCCCA 10 V_AP1_Q4_M00188 TRANSFAC - 34528567 34528577 9.0E-06 ACTGACTCAGA 11 V_HNF3_Q6_M00791 TRANSFAC + 34524156 34524168 3.0E-06 CTGAACAAATACA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 34524156 34524166 5.0E-06 TATTTGTTCAG 11 V_NKX25_Q5_M01043 TRANSFAC - 34528523 34528532 3.0E-06 TGCCACTTGA 10 V_MATH1_Q2_M01716 TRANSFAC + 34522619 34522628 3.0E-06 GCAGCTGGTG 10 V_GADP_01_M01258 TRANSFAC - 34528530 34528541 8.0E-06 CACTTCCGCTGC 12 V_NFE4_Q5_M02105 TRANSFAC + 34528443 34528454 5.0E-06 CTCCCTCGCCTC 12 V_NKX3A_01_M00451 TRANSFAC + 34524131 34524142 6.0E-06 TTATAAGTAATC 12 V_SMAD4_Q6_M00733 TRANSFAC + 34524081 34524095 9.0E-06 GGAAGTCAGACAGCC 15 V_HBP1_04_M02866 TRANSFAC + 34524123 34524139 3.0E-06 ATTTCCCATTATAAGTA 17 V_NKX25_03_M01414 TRANSFAC - 34528519 34528534 7.0E-06 GCTGCCACTTGACATT 16 V_GABPBETA_Q3_M01876 TRANSFAC + 34528532 34528542 7.0E-06 AGCGGAAGTGG 11 V_GABPBETA_Q3_M01876 TRANSFAC + 34528870 34528880 7.0E-06 ACAGGAAGGGC 11 V_AP1FJ_Q2_M00172 TRANSFAC - 34528567 34528577 6.0E-06 ACTGACTCAGA 11 V_NANOG_01_M01123 TRANSFAC + 34529063 34529074 4.0E-06 GGGGTCATTGCC 12 V_ERR1_Q2_M00511 TRANSFAC + 34522719 34522732 8.0E-06 TCATAAAGGACACA 14 V_GEN_INI2_B_M00313 TRANSFAC - 34522667 34522674 1.0E-05 CCTCATTT 8 V_AIRE_01_M00999 TRANSFAC - 34524140 34524165 1.0E-06 ATTTGTTCAGGTAAATAAGGAAGGAT 26 V_FPM315_01_M01587 TRANSFAC + 34522692 34522703 7.0E-06 CGAGGAGGAGGA 12 V_MYB_Q3_M00773 TRANSFAC - 34522218 34522228 2.0E-06 ACTGTCAGTTG 11 V_P53_05_M01655 TRANSFAC + 34522289 34522308 1.0E-05 GGAAATGCTTGTACATGCAC 20 V_FOXA2_03_M02260 TRANSFAC + 34522596 34522607 8.0E-06 TGTTTGCTTTGT 12 V_LMO2COM_02_M00278 TRANSFAC + 34529086 34529094 7.0E-06 CAGATAGGG 9 V_ETS1_B_M00339 TRANSFAC + 34522662 34522676 9.0E-06 GCAGGAAATGAGGCA 15 V_ZFP281_01_M01597 TRANSFAC - 34528756 34528766 1.0E-06 TGGGGGTGGGG 11 V_EWSR1FLI1_01_M02252 TRANSFAC - 34528588 34528605 7.0E-06 GCTAGGAAGGCAGGAATC 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 34528592 34528609 3.0E-06 GAAAGCTAGGAAGGCAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 34528596 34528613 1.0E-06 GAAAGAAAGCTAGGAAGG 18 V_SMAD3_Q6_M00701 TRANSFAC - 34524084 34524092 6.0E-06 TGTCTGACT 9 V_EKLF_Q5_M01874 TRANSFAC - 34522753 34522762 5.0E-06 CCACACCCAG 10 V_PITX2_01_M01447 TRANSFAC - 34524132 34524148 6.0E-06 AGGAAGGATTACTTATA 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 34528755 34528768 5.0E-06 TCTGGGGGTGGGGC 14 V_AP2ALPHA_03_M01047 TRANSFAC + 34528832 34528846 2.0E-06 AGAGCCTGAGGCTGG 15 V_AP2ALPHA_03_M01047 TRANSFAC - 34528832 34528846 2.0E-06 CCAGCCTCAGGCTCT 15 V_OBOX5_01_M01381 TRANSFAC - 34524132 34524148 3.0E-06 AGGAAGGATTACTTATA 17 V_FEV_01_M02269 TRANSFAC + 34522663 34522670 1.0E-05 CAGGAAAT 8 V_SEF1_C_M00214 TRANSFAC + 34529000 34529018 3.0E-06 CAGACCCCGATCTGTGCTC 19 V_OBOX6_06_M03067 TRANSFAC + 34524132 34524148 3.0E-06 TATAAGTAATCCTTCCT 17 V_PAX4_04_M00380 TRANSFAC - 34522226 34522255 9.0E-06 GAAAACTACCAGACTTGCTTATTGCACACT 30 V_PAX4_04_M00380 TRANSFAC + 34524159 34524188 2.0E-06 AACAAATACACTCCTTGCTTACCTCAGACC 30 V_ZIC1_05_M02939 TRANSFAC + 34528973 34528987 6.0E-06 ACACACAGCAGGGCT 15 V_NANOG_02_M01247 TRANSFAC - 34522596 34522615 3.0E-06 GCTGAGTAACAAAGCAAACA 20 V_NKX21_01_M01312 TRANSFAC - 34528519 34528534 1.0E-06 GCTGCCACTTGACATT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.