Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FNTA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 2339 farnesyltransferase, CAAX box, alpha chr8 + 42906441 - 42911941 42911441 Transcription Factor Binding Sites   Download all TFBS in the FNTA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 42911989 42912001 3.0E-06 GTAAATATAAGAA 13 Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX + 42912729 42912739 4.0E-06 TGGACACAATT 11 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 42912692 42912707 8.0E-06 TTAGGTCATGATTTCA 16 SPIC_ETS_full_monomeric_14_1 SELEX + 42911412 42911425 3.0E-06 GAAAACAGGAAGTG 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 42912662 42912672 6.0E-06 GCCACTCCCCC 11 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 42914579 42914595 7.0E-06 GCAAAGAAAAGAAAACC 17 ELF4_ETS_full_monomeric_12_1 SELEX + 42911414 42911425 5.0E-06 AAACAGGAAGTG 12 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX + 42912728 42912738 1.0E-06 ATGGACACAAT 11 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 42912607 42912616 9.0E-06 CTCACGTGAC 10 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 42911096 42911107 2.0E-06 AAAATGCTGAGA 12 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 42912693 42912710 8.0E-06 TAGGTCATGATTTCACTT 18 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 42912509 42912522 5.0E-06 AAAAAATATATATG 14 SPIB_ETS_DBD_monomeric_14_1 SELEX + 42911412 42911425 0.0E+00 GAAAACAGGAAGTG 14 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX + 42912729 42912738 5.0E-06 TGGACACAAT 10 RUNX3_RUNX_full_monomeric_10_1 SELEX - 42914574 42914583 3.0E-06 AAACCACAAT 10 T_MA0009.1 JASPAR + 42912678 42912688 3.0E-06 CTAGGTGTCAC 11 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 42914575 42914583 8.0E-06 AAACCACAA 9 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX + 42910629 42910645 1.0E-06 AACAAGTTTTTCAGGTT 17 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 42910629 42910645 2.0E-06 AACCTGAAAAACTTGTT 17 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 42912607 42912616 7.0E-06 CTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 42912607 42912616 7.0E-06 GTCACGTGAG 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 42910945 42910954 9.0E-06 AAAAATTAGC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 42912607 42912616 8.0E-06 CTCACGTGAC 10 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 42912728 42912739 1.0E-06 ATGGACACAATT 12 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 42912607 42912616 5.0E-06 CTCACGTGAC 10 znf143_MA0088.1 JASPAR - 42911266 42911285 9.0E-06 GATCCCCCAGGCTCCCACGC 20 SP4_C2H2_full_monomeric_17_1 SELEX - 42911442 42911458 4.0E-06 GAGGCCCCGCCCCTCCC 17 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 42912607 42912616 8.0E-06 CTCACGTGAC 10 Foxd3_MA0041.1 JASPAR + 42912512 42912523 2.0E-06 ATATATTTTTTT 12 ERF_ETS_DBD_monomeric_10_1 SELEX + 42911416 42911425 9.0E-06 ACAGGAAGTG 10 FEV_MA0156.1 JASPAR - 42912625 42912632 1.0E-05 CAGGAAAT 8 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 42912725 42912741 4.0E-06 ATAATGGACACAATTAC 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 42912725 42912741 8.0E-06 GTAATTGTGTCCATTAT 17 Pou5f1_MA0142.1 JASPAR + 42912370 42912384 3.0E-06 CTTTCAGATGGTAAT 15 ELF5_ETS_full_monomeric_11_1 SELEX + 42911415 42911425 6.0E-06 AACAGGAAGTG 11 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 42912607 42912616 6.0E-06 CTCACGTGAC 10 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 42912547 42912557 4.0E-06 ACCAATTTAAA 11 MAFK_bZIP_full_monomeric_12_1 SELEX + 42911095 42911106 3.0E-06 GAAAATGCTGAG 12 SPI1_ETS_full_monomeric_14_1 SELEX + 42911412 42911425 1.0E-06 GAAAACAGGAAGTG 14 RUNX1_MA0002.2 JASPAR + 42914573 42914583 5.0E-06 GATTGTGGTTT 11 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 42916425 42916439 6.0E-06 GAGGTTAAAAGCACA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 42912511 42912523 4.0E-06 AAAAAAATATATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 42911989 42912001 6.0E-06 GTAAATATAAGAA 13 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 42912607 42912616 6.0E-06 GTCACGTGAG 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 42912607 42912616 2.0E-06 CTCACGTGAC 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 42912547 42912557 7.0E-06 ACCAATTTAAA 11 V_FOXP1_01_M00987 TRANSFAC + 42912510 42912529 9.0E-06 ATATATATTTTTTTGATTGG 20 V_SRF_Q6_M00186 TRANSFAC + 42911164 42911177 4.0E-06 GTCCAAAGAAGGAA 14 V_SPI1_01_M01203 TRANSFAC + 42911412 42911428 1.0E-06 GAAAACAGGAAGTGGCC 17 V_TCF3_01_M01594 TRANSFAC + 42910950 42910962 3.0E-06 TTTTTGTATTTTT 13 V_CDX2_Q5_01_M01659 TRANSFAC + 42911986 42911996 8.0E-06 TTCGTAAATAT 11 V_XFD1_01_M00267 TRANSFAC + 42911986 42911999 5.0E-06 TTCGTAAATATAAG 14 V_MAFK_03_M02776 TRANSFAC + 42911094 42911108 5.0E-06 TGAAAATGCTGAGAT 15 V_NRSF_Q4_M01028 TRANSFAC - 42911588 42911606 3.0E-06 CATCTCTTCCTTGTGCTGC 19 V_ARNT_02_M00539 TRANSFAC + 42912602 42912621 6.0E-06 AGGTTCTCACGTGACTGTGG 20 V_ARNT_02_M00539 TRANSFAC - 42912602 42912621 6.0E-06 CCACAGTCACGTGAGAACCT 20 V_HMGIY_Q3_M01010 TRANSFAC + 42912511 42912525 8.0E-06 TATATATTTTTTTGA 15 V_EVI1_04_M00081 TRANSFAC - 42914582 42914596 5.0E-06 AGCAAAGAAAAGAAA 15 V_FOXD3_01_M00130 TRANSFAC + 42912512 42912523 2.0E-06 ATATATTTTTTT 12 V_BCL6_01_M01183 TRANSFAC + 42910636 42910651 1.0E-06 TTTTCAGGTTAACTTT 16 V_AML3_Q6_M01856 TRANSFAC - 42914575 42914582 1.0E-05 AACCACAA 8 V_POU5F1_02_M02245 TRANSFAC + 42912370 42912384 3.0E-06 CTTTCAGATGGTAAT 15 V_GABP_B_M00341 TRANSFAC - 42911759 42911770 5.0E-06 GCCGGAAGCGCG 12 V_SP1_Q6_01_M00931 TRANSFAC + 42911446 42911455 4.0E-06 GGGGCGGGGC 10 V_POU3F2_02_M00464 TRANSFAC + 42910581 42910590 9.0E-06 TGATGTTAAT 10 V_MAF_Q6_M00648 TRANSFAC - 42910603 42910618 9.0E-06 TGGAAGGAGGTGGGGG 16 V_MAF_Q6_M00648 TRANSFAC + 42911414 42911429 8.0E-06 AAACAGGAAGTGGCCT 16 V_PU1_Q4_M01172 TRANSFAC - 42911413 42911431 7.0E-06 CGAGGCCACTTCCTGTTTT 19 V_TCFAP2E_04_M02926 TRANSFAC - 42912515 42912528 2.0E-06 CAATCAAAAAAATA 14 V_CDX_Q5_M00991 TRANSFAC - 42912513 42912530 3.0E-06 TCCAATCAAAAAAATATA 18 V_CEBPB_01_M00109 TRANSFAC + 42912586 42912599 4.0E-06 GGATTGTGAAATAC 14 V_PAX_Q6_M00808 TRANSFAC - 42912622 42912632 1.0E-05 CAGGAAATCAC 11 V_ELF4_04_M02850 TRANSFAC - 42912510 42912526 9.0E-06 ATCAAAAAAATATATAT 17 V_ELF4_04_M02850 TRANSFAC - 42912511 42912527 5.0E-06 AATCAAAAAAATATATA 17 V_GC_01_M00255 TRANSFAC + 42911444 42911457 2.0E-06 GAGGGGCGGGGCCT 14 V_MECP2_01_M01298 TRANSFAC + 42911074 42911088 9.0E-06 CCGGGCTTTATATTT 15 V_IPF1_Q4_M00436 TRANSFAC + 42910583 42910594 2.0E-06 ATGTTAATGACC 12 V_ZFP105_03_M02827 TRANSFAC - 42912516 42912530 4.0E-06 TCCAATCAAAAAAAT 15 V_RUNX1_01_M02257 TRANSFAC + 42914573 42914583 5.0E-06 GATTGTGGTTT 11 V_SOX7_04_M02911 TRANSFAC - 42912723 42912744 4.0E-06 CTAGTAATTGTGTCCATTATAC 22 V_AML2_01_M01759 TRANSFAC - 42914575 42914582 1.0E-05 AACCACAA 8 V_AMEF2_Q6_M00403 TRANSFAC + 42911077 42911094 9.0E-06 GGCTTTATATTTCGTTTT 18 V_AP1_Q4_M00188 TRANSFAC + 42912632 42912642 4.0E-06 GGTGACTAAAT 11 V_SP1_Q6_M00196 TRANSFAC + 42911444 42911456 1.0E-06 GAGGGGCGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 42911435 42911448 9.0E-06 GGGGGAAGGGAGGG 14 V_NKX25_Q5_M01043 TRANSFAC + 42910892 42910901 6.0E-06 TCCCACTTCA 10 V_GADP_01_M01258 TRANSFAC + 42911761 42911772 8.0E-06 CGCTTCCGGCCC 12 V_REX1_03_M01744 TRANSFAC + 42911487 42911498 3.0E-06 GAGATGGCGGCC 12 V_REX1_03_M01744 TRANSFAC + 42911601 42911612 3.0E-06 GAGATGGCGGCC 12 V_SPIB_01_M01204 TRANSFAC + 42911412 42911428 1.0E-06 GAAAACAGGAAGTGGCC 17 V_DAX1_01_M01248 TRANSFAC + 42910048 42910067 5.0E-06 GCAGGAGAAGGTCAGAGAGA 20 V_TEL2_Q6_M00678 TRANSFAC - 42911417 42911426 6.0E-06 CCACTTCCTG 10 V_CETS1P54_01_M00032 TRANSFAC + 42911416 42911425 9.0E-06 ACAGGAAGTG 10 V_TBP_06_M02814 TRANSFAC + 42912507 42912522 1.0E-06 CCCATATATATTTTTT 16 V_HIC1_02_M01072 TRANSFAC - 42911534 42911548 9.0E-06 GCCGGCTGCCCGGGC 15 V_OCT4_02_M01124 TRANSFAC + 42911087 42911101 7.0E-06 TTCGTTTTGAAAATG 15 V_OCT4_02_M01124 TRANSFAC + 42912371 42912385 2.0E-06 TTTCAGATGGTAATG 15 V_SRF_03_M01304 TRANSFAC + 42911164 42911176 5.0E-06 GTCCAAAGAAGGA 13 V_GATA4_Q3_M00632 TRANSFAC + 42911411 42911422 4.0E-06 AGAAAACAGGAA 12 V_SP4_Q5_M01273 TRANSFAC - 42911445 42911455 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC + 42911413 42911424 1.0E-06 AAAACAGGAAGT 12 V_FXR_IR1_Q6_M00767 TRANSFAC + 42910815 42910827 8.0E-06 GGATCTCTGTCCC 13 V_MTF1_06_M02882 TRANSFAC + 42911993 42912006 5.0E-06 ATATAAGAAATTTC 14 V_GABPBETA_Q3_M01876 TRANSFAC + 42911416 42911426 5.0E-06 ACAGGAAGTGG 11 V_TAL1_01_M01591 TRANSFAC + 42914581 42914593 5.0E-06 TTTTCTTTTCTTT 13 V_STRA13_01_M00985 TRANSFAC + 42912605 42912618 2.0E-06 TTCTCACGTGACTG 14 V_STRA13_01_M00985 TRANSFAC - 42912605 42912618 4.0E-06 CAGTCACGTGAGAA 14 V_IPF1_05_M01255 TRANSFAC - 42910583 42910594 9.0E-06 GGTCATTAACAT 12 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 42910593 42910601 8.0E-06 GAGGGTGGG 9 V_AP1FJ_Q2_M00172 TRANSFAC + 42912632 42912642 4.0E-06 GGTGACTAAAT 11 V_ZBTB3_03_M02825 TRANSFAC - 42910834 42910850 8.0E-06 ATCACCACTGCACTCCA 17 V_FOXL1_02_M02857 TRANSFAC - 42911084 42911099 8.0E-06 TTTTCAAAACGAAATA 16 V_GFI1B_01_M01058 TRANSFAC - 42912539 42912550 7.0E-06 TAAATCAGTAAA 12 V_GATA3_01_M00077 TRANSFAC + 42912529 42912537 1.0E-05 GAGATAGTG 9 V_VDR_Q6_M00961 TRANSFAC + 42912399 42912410 1.0E-06 CCCTGTGAACCT 12 V_STAT6_02_M00500 TRANSFAC + 42912624 42912631 1.0E-05 GATTTCCT 8 V_SIX4_01_M01374 TRANSFAC - 42912676 42912692 6.0E-06 AGACGTGACACCTAGAG 17 V_CEBPB_Q6_M01896 TRANSFAC + 42912589 42912598 4.0E-06 TTGTGAAATA 10 V_SRF_02_M01257 TRANSFAC + 42911164 42911181 1.0E-05 GTCCAAAGAAGGAATCGC 18 V_SRF_06_M02916 TRANSFAC - 42912512 42912528 8.0E-06 CAATCAAAAAAATATAT 17 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 42914576 42914583 1.0E-05 TGTGGTTT 8 V_IPF1_Q4_01_M01013 TRANSFAC - 42910582 42910596 0.0E+00 TGGGTCATTAACATC 15 V_HOMEZ_01_M01429 TRANSFAC + 42911082 42911098 7.0E-06 TATATTTCGTTTTGAAA 17 V_SP1_Q2_01_M00933 TRANSFAC - 42911445 42911454 7.0E-06 CCCCGCCCCT 10 V_TFE_Q6_M01029 TRANSFAC - 42911015 42911022 1.0E-05 TCATGTGA 8 V_CEBP_Q2_01_M00912 TRANSFAC - 42912586 42912597 9.0E-06 ATTTCACAATCC 12 V_GATA1_02_M00126 TRANSFAC + 42912526 42912539 8.0E-06 TTGGAGATAGTGTT 14 V_SP1_Q4_01_M00932 TRANSFAC + 42911444 42911456 2.0E-06 GAGGGGCGGGGCC 13 V_ELK1_03_M01163 TRANSFAC + 42911415 42911425 1.0E-05 AACAGGAAGTG 11 V_TCF3_05_M02920 TRANSFAC - 42912513 42912527 8.0E-06 AATCAAAAAAATATA 15 V_FEV_01_M02269 TRANSFAC - 42912625 42912632 1.0E-05 CAGGAAAT 8 V_CDPCR3_01_M00105 TRANSFAC - 42912508 42912522 6.0E-06 AAAAAATATATATGG 15 V_HOXC9_01_M01416 TRANSFAC - 42910582 42910597 1.0E-06 GTGGGTCATTAACATC 16 V_OCT4_01_M01125 TRANSFAC + 42912370 42912384 9.0E-06 CTTTCAGATGGTAAT 15 V_OCT4_01_M01125 TRANSFAC + 42912539 42912553 8.0E-06 TTTACTGATTTAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.