Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RRP12 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 23223 ribosomal RNA processing 12 homolog (S. cerevisiae) chr10 - 99160627 - 99166127 99161127 Transcription Factor Binding Sites   Download all TFBS in the RRP12 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 99165831 99165843 5.0E-06 AAAAACAACAAAA 13 GABPA_MA0062.2 JASPAR - 99161101 99161111 1.0E-06 CCGGAAGTGAC 11 SOX10_HMG_full_dimeric_15_3 SELEX - 99160238 99160252 3.0E-06 ATGAGCTGCAGTCAG 15 SPIC_ETS_full_monomeric_14_1 SELEX - 99161082 99161095 9.0E-06 AAGAAGAGGAAGTG 14 ETV5_ETS_DBD_monomeric_10_1 SELEX - 99161142 99161151 6.0E-06 ACCGGATGTT 10 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 99165831 99165847 2.0E-06 AAAAACAACAAAAAAAA 17 ELF4_ETS_full_monomeric_12_1 SELEX - 99161103 99161114 1.0E-06 AATCCGGAAGTG 12 TEF_bZIP_DBD_dimeric_12_1 SELEX + 99160250 99160261 5.0E-06 CATTATGTAACT 12 TEF_bZIP_DBD_dimeric_12_1 SELEX - 99160250 99160261 4.0E-06 AGTTACATAATG 12 SOX9_HMG_full_dimeric_17_3 SELEX - 99160237 99160253 4.0E-06 AATGAGCTGCAGTCAGG 17 HLF_bZIP_full_dimeric_12_1 SELEX + 99160250 99160261 3.0E-06 CATTATGTAACT 12 HLF_bZIP_full_dimeric_12_1 SELEX - 99160250 99160261 6.0E-06 AGTTACATAATG 12 ZNF232_C2H2_full_monomeric_19_1 SELEX + 99160980 99160998 9.0E-06 GCGACCCATGTTGACTAAG 19 NFIL3_MA0025.1 JASPAR + 99160252 99160262 1.0E-06 TTATGTAACTT 11 SOX7_HMG_full_dimeric_17_2 SELEX - 99160237 99160253 4.0E-06 AATGAGCTGCAGTCAGG 17 DBP_bZIP_full_dimeric_12_1 SELEX + 99160250 99160261 5.0E-06 CATTATGTAACT 12 DBP_bZIP_full_dimeric_12_1 SELEX - 99160250 99160261 3.0E-06 AGTTACATAATG 12 SPIB_ETS_DBD_monomeric_14_1 SELEX - 99161082 99161095 1.0E-06 AAGAAGAGGAAGTG 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 99161103 99161116 6.0E-06 CGAATCCGGAAGTG 14 RFX2_RFX_DBD_dimeric_15_1 SELEX + 99161199 99161213 5.0E-06 CGTTGCTAGGGAGGA 15 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 99161217 99161233 6.0E-06 TAGGTTGCTAAGGGTTC 17 ELF3_ETS_full_monomeric_13_1 SELEX - 99161102 99161114 2.0E-06 AATCCGGAAGTGA 13 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 99159885 99159894 9.0E-06 CTTATAAAAA 10 SP1_MA0079.2 JASPAR + 99160812 99160821 7.0E-06 CCCCGCCCCC 10 TBR1_TBX_full_monomeric_11_1 SELEX - 99161151 99161161 9.0E-06 GAGGTGTAAAA 11 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 99159960 99159973 1.0E-06 ATACCAGCTGTTGT 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 99159960 99159973 0.0E+00 ACAACAGCTGGTAT 14 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX + 99165565 99165581 3.0E-06 TTACGCCTGTAATGCCA 17 SP1_C2H2_DBD_monomeric_11_1 SELEX + 99160811 99160821 4.0E-06 ACCCCGCCCCC 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 99159885 99159894 7.0E-06 CTTATAAAAA 10 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 99160250 99160261 4.0E-06 AGTTACATAATG 12 RFX5_RFX_DBD_dimeric_16_3 SELEX - 99161121 99161136 8.0E-06 TTTTACCATAGTAATG 16 Foxd3_MA0041.1 JASPAR - 99165832 99165843 7.0E-06 TTTTGTTGTTTT 12 EHF_ETS_full_monomeric_12_1 SELEX - 99161103 99161114 2.0E-06 AATCCGGAAGTG 12 TFAP4_bHLH_full_dimeric_10_1 SELEX + 99159962 99159971 4.0E-06 ACCAGCTGTT 10 TFAP4_bHLH_full_dimeric_10_1 SELEX - 99159962 99159971 7.0E-06 AACAGCTGGT 10 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 99159884 99159894 4.0E-06 TCTTATAAAAA 11 ELF5_ETS_full_monomeric_11_1 SELEX - 99161103 99161113 7.0E-06 ATCCGGAAGTG 11 ELF1_ETS_full_monomeric_12_1 SELEX - 99161103 99161114 0.0E+00 AATCCGGAAGTG 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 99159885 99159894 6.0E-06 CTTATAAAAA 10 ELF3_ETS_DBD_monomeric_12_1 SELEX - 99161103 99161114 3.0E-06 AATCCGGAAGTG 12 SPDEF_ETS_full_monomeric_11_1 SELEX - 99161142 99161152 2.0E-06 AACCGGATGTT 11 SPI1_ETS_full_monomeric_14_1 SELEX - 99161082 99161095 2.0E-06 AAGAAGAGGAAGTG 14 SPI1_ETS_full_monomeric_14_1 SELEX - 99161103 99161116 9.0E-06 CGAATCCGGAAGTG 14 IRF3_IRF_full_trimeric_21_1 SELEX + 99166056 99166076 3.0E-06 AGGAAAAGGAAGCAGAATGTG 21 ETV6_ETS_full_dimeric_15_1 SELEX + 99166055 99166069 6.0E-06 GAGGAAAAGGAAGCA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 99165832 99165844 4.0E-06 AAAACAACAAAAA 13 MSC_bHLH_full_dimeric_10_1 SELEX + 99159962 99159971 3.0E-06 ACCAGCTGTT 10 MSC_bHLH_full_dimeric_10_1 SELEX - 99159962 99159971 9.0E-06 AACAGCTGGT 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 99165831 99165843 3.0E-06 AAAAACAACAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 99165834 99165846 4.0E-06 AACAACAAAAAAA 13 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 99161132 99161145 5.0E-06 TAAAACAGTCAACA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 99165831 99165844 4.0E-06 AAAAACAACAAAAA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 99165834 99165847 4.0E-06 AACAACAAAAAAAA 14 V_FOXP1_01_M00987 TRANSFAC - 99165828 99165847 0.0E+00 TTTTTTTTGTTGTTTTTTGA 20 V_AP2ALPHA_Q6_M01857 TRANSFAC - 99165549 99165559 6.0E-06 CGCCCCCGGCC 11 V_SPI1_01_M01203 TRANSFAC - 99161079 99161095 1.0E-06 AAGAAGAGGAAGTGAAG 17 V_SPI1_01_M01203 TRANSFAC + 99166031 99166047 1.0E-06 AGAAAAGGGAACTGGTG 17 V_IPF1_02_M01234 TRANSFAC - 99160248 99160257 5.0E-06 ACATAATGAG 10 V_TCF3_01_M01594 TRANSFAC - 99165832 99165844 4.0E-06 TTTTTGTTGTTTT 13 V_FLI1_Q6_M01208 TRANSFAC - 99161101 99161111 1.0E-06 CCGGAAGTGAC 11 V_BACH2_01_M00490 TRANSFAC - 99159941 99159951 6.0E-06 GATGCGTCATC 11 V_ZFP410_04_M02936 TRANSFAC - 99159926 99159942 6.0E-06 TCGCTCCTCCCCTTTAT 17 TAL1_TCF3_MA0091.1 JASPAR + 99159960 99159971 7.0E-06 ATACCAGCTGTT 12 TAL1_TCF3_MA0091.1 JASPAR - 99159962 99159973 6.0E-06 ACAACAGCTGGT 12 V_ZEC_01_M01081 TRANSFAC + 99161212 99161224 2.0E-06 GAAGTTAGGTTGC 13 V_NKX29_01_M01352 TRANSFAC - 99159856 99159872 9.0E-06 GCTTAAGTACTTGAGGG 17 V_BCL6_01_M01183 TRANSFAC - 99165830 99165845 0.0E+00 TTTTTTGTTGTTTTTT 16 V_SP1_Q6_01_M00931 TRANSFAC - 99160811 99160820 7.0E-06 GGGGCGGGGT 10 V_HNF4_Q6_M00967 TRANSFAC + 99160314 99160322 7.0E-06 AAGGTCCAA 9 V_AP4_Q6_M00176 TRANSFAC - 99159962 99159971 8.0E-06 AACAGCTGGT 10 V_RFX4_03_M02789 TRANSFAC - 99161197 99161211 0.0E+00 CTCCCTAGCAACGGA 15 V_RFX4_03_M02789 TRANSFAC - 99161217 99161231 2.0E-06 ACCCTTAGCAACCTA 15 V_HNF3_Q6_01_M01012 TRANSFAC - 99165828 99165845 8.0E-06 TTTTTTGTTGTTTTTTGA 18 V_MAF_Q6_M00648 TRANSFAC + 99161206 99161221 4.0E-06 AGGGAGGAAGTTAGGT 16 V_SP1_03_M02281 TRANSFAC + 99160812 99160821 7.0E-06 CCCCGCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC + 99161327 99161336 1.0E-06 TGTAATCCCA 10 V_AP4_Q6_02_M01860 TRANSFAC + 99159963 99159975 2.0E-06 CCAGCTGTTGTCA 13 V_PU1_Q4_M01172 TRANSFAC + 99161076 99161094 0.0E+00 AGCCTTCACTTCCTCTTCT 19 V_PU1_Q4_M01172 TRANSFAC - 99166057 99166075 6.0E-06 ACATTCTGCTTCCTTTTCC 19 V_HOXD13_01_M01404 TRANSFAC + 99159882 99159897 8.0E-06 GTTCTTATAAAAAGCA 16 V_TCFAP2E_04_M02926 TRANSFAC + 99165834 99165847 2.0E-06 AACAACAAAAAAAA 14 V_HELIOSA_01_M01003 TRANSFAC - 99161329 99161339 7.0E-06 TATTGGGATTA 11 V_CETS2_02_M02064 TRANSFAC - 99161142 99161151 8.0E-06 ACCGGATGTT 10 V_CETS1P54_02_M00074 TRANSFAC - 99161141 99161153 8.0E-06 AAACCGGATGTTG 13 V_BARBIE_01_M00238 TRANSFAC + 99159888 99159902 0.0E+00 ATAAAAAGCAGAAAG 15 V_NRSE_B_M00325 TRANSFAC + 99161039 99161059 9.0E-06 CGTAGAAACACGCTCAGAACC 21 V_PDEF_02_M02075 TRANSFAC - 99161142 99161151 5.0E-06 ACCGGATGTT 10 V_ELF4_04_M02850 TRANSFAC + 99165826 99165842 3.0E-06 TCTCAAAAAACAACAAA 17 V_GC_01_M00255 TRANSFAC - 99160176 99160189 1.0E-06 AAGAGGCGGAGCTG 14 V_FOXA2_02_M02853 TRANSFAC + 99165831 99165845 2.0E-06 AAAAACAACAAAAAA 15 V_DBP_Q6_01_M01872 TRANSFAC + 99160252 99160259 5.0E-06 TTATGTAA 8 V_ELK1_05_M01981 TRANSFAC - 99161142 99161151 7.0E-06 ACCGGATGTT 10 V_SPI1_03_M02078 TRANSFAC - 99161082 99161091 1.0E-06 AGAGGAAGTG 10 V_ZFP105_03_M02827 TRANSFAC + 99165827 99165841 2.0E-06 CTCAAAAAACAACAA 15 V_ZFP105_03_M02827 TRANSFAC + 99165830 99165844 0.0E+00 AAAAAACAACAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 99165833 99165847 3.0E-06 AAACAACAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 99165834 99165848 1.0E-06 AACAACAAAAAAAAG 15 V_SAP1A_02_M01983 TRANSFAC - 99161142 99161151 9.0E-06 ACCGGATGTT 10 V_PET1_02_M02072 TRANSFAC - 99161142 99161151 9.0E-06 ACCGGATGTT 10 V_E4BP4_01_M00045 TRANSFAC + 99160250 99160261 1.0E-06 CATTATGTAACT 12 V_TEF_Q6_M00672 TRANSFAC + 99159880 99159891 1.0E-06 ATGTTCTTATAA 12 V_XFD3_01_M00269 TRANSFAC + 99161136 99161149 6.0E-06 ACAGTCAACATCCG 14 V_SPDEF_03_M02811 TRANSFAC + 99161102 99161117 5.0E-06 TCACTTCCGGATTCGT 16 V_SPDEF_03_M02811 TRANSFAC + 99161141 99161156 2.0E-06 CAACATCCGGTTTTAC 16 V_IRF2_01_M00063 TRANSFAC - 99160209 99160221 9.0E-06 CAAAAGCGAAGCC 13 V_ZBP89_Q4_M01816 TRANSFAC - 99166050 99166059 2.0E-06 TCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC - 99160810 99160822 3.0E-06 CGGGGGCGGGGTT 13 V_FOXK1_04_M02856 TRANSFAC + 99165829 99165843 1.0E-06 CAAAAAACAACAAAA 15 V_FOXK1_04_M02856 TRANSFAC + 99165832 99165846 2.0E-06 AAAACAACAAAAAAA 15 V_TTF1_Q6_M00794 TRANSFAC + 99159856 99159867 4.0E-06 CCCTCAAGTACT 12 V_NKX22_02_M01372 TRANSFAC - 99159854 99159870 1.0E-05 TTAAGTACTTGAGGGTA 17 V_RFXDC2_03_M02790 TRANSFAC - 99161197 99161211 1.0E-06 CTCCCTAGCAACGGA 15 V_RFXDC2_03_M02790 TRANSFAC - 99161217 99161231 3.0E-06 ACCCTTAGCAACCTA 15 V_ASCL2_03_M02737 TRANSFAC - 99159958 99159974 7.0E-06 GACAACAGCTGGTATTT 17 V_GADP_01_M01258 TRANSFAC + 99161103 99161114 8.0E-06 CACTTCCGGATT 12 V_IK2_01_M00087 TRANSFAC - 99161328 99161339 4.0E-06 TATTGGGATTAC 12 V_AP4_Q5_M00175 TRANSFAC - 99159962 99159971 8.0E-06 AACAGCTGGT 10 V_WHN_B_M00332 TRANSFAC - 99165897 99165907 2.0E-06 AGCGACGCTTT 11 V_TEL2_Q6_M00678 TRANSFAC + 99161102 99161111 9.0E-06 TCACTTCCGG 10 V_MEF2_Q6_01_M00941 TRANSFAC - 99159886 99159897 8.0E-06 TGCTTTTTATAA 12 V_CDC5_01_M00478 TRANSFAC - 99161126 99161137 1.0E-05 GTTTTACCATAG 12 V_SP1_01_M00008 TRANSFAC - 99160811 99160820 3.0E-06 GGGGCGGGGT 10 V_SOX11_03_M02795 TRANSFAC + 99165832 99165848 1.0E-05 AAAACAACAAAAAAAAG 17 V_NKX23_01_M01457 TRANSFAC + 99159857 99159872 0.0E+00 CCTCAAGTACTTAAGC 16 V_NKX23_01_M01457 TRANSFAC - 99159857 99159872 0.0E+00 GCTTAAGTACTTGAGG 16 V_FOXO1_Q5_M01216 TRANSFAC + 99165831 99165839 5.0E-06 AAAAACAAC 9 V_EVI1_06_M00011 TRANSFAC + 99160307 99160315 2.0E-06 ACAAGATAA 9 V_VBP_01_M00228 TRANSFAC - 99160251 99160260 0.0E+00 GTTACATAAT 10 V_ELF1_Q6_M00746 TRANSFAC - 99161083 99161094 0.0E+00 AGAAGAGGAAGT 12 V_ATF1_Q6_M00691 TRANSFAC + 99165958 99165968 8.0E-06 CTCTGAAGACA 11 V_ERM_02_M02069 TRANSFAC - 99161142 99161151 8.0E-06 ACCGGATGTT 10 V_MTF1_06_M02882 TRANSFAC + 99165833 99165846 4.0E-06 AAACAACAAAAAAA 14 V_TTF1_Q5_M02034 TRANSFAC - 99159855 99159868 6.0E-06 AAGTACTTGAGGGT 14 V_POU6F1_02_M01462 TRANSFAC - 99160243 99160259 1.0E-06 TTACATAATGAGCTGCA 17 V_GABPBETA_Q3_M01876 TRANSFAC - 99161081 99161091 2.0E-06 AGAGGAAGTGA 11 V_AP4_01_M00005 TRANSFAC + 99159959 99159976 9.0E-06 AATACCAGCTGTTGTCAT 18 V_EHF_06_M02745 TRANSFAC - 99161102 99161116 1.0E-06 CGAATCCGGAAGTGA 15 V_FAC1_01_M00456 TRANSFAC + 99165831 99165844 0.0E+00 AAAAACAACAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 99165834 99165847 3.0E-06 AACAACAAAAAAAA 14 V_PDEF_01_M02040 TRANSFAC - 99161142 99161151 1.0E-05 ACCGGATGTT 10 V_FOXL1_02_M02857 TRANSFAC + 99165830 99165845 9.0E-06 AAAAAACAACAAAAAA 16 V_NKX22_01_M00485 TRANSFAC + 99159859 99159868 6.0E-06 TCAAGTACTT 10 V_NKX22_01_M00485 TRANSFAC - 99159861 99159870 1.0E-06 TTAAGTACTT 10 V_TBX15_02_M01264 TRANSFAC + 99165882 99165899 3.0E-06 GTGTGTTAATGTGAGAAA 18 V_MTATA_B_M00320 TRANSFAC + 99161285 99161301 5.0E-06 CCTTATAAAACTGGAGT 17 V_SPIC_02_M02077 TRANSFAC - 99161082 99161091 3.0E-06 AGAGGAAGTG 10 V_PITX2_Q2_M00482 TRANSFAC + 99161327 99161337 0.0E+00 TGTAATCCCAA 11 V_TBP_04_M02918 TRANSFAC + 99166081 99166095 4.0E-06 CTGTTATAAGCGAGC 15 V_CETS1_02_M02063 TRANSFAC - 99161142 99161151 8.0E-06 ACCGGATGTT 10 V_POU6F1_03_M01479 TRANSFAC - 99160243 99160259 2.0E-06 TTACATAATGAGCTGCA 17 V_EFC_Q6_M00626 TRANSFAC + 99161121 99161134 2.0E-06 CATTACTATGGTAA 14 V_HLF_01_M00260 TRANSFAC - 99160251 99160260 1.0E-06 GTTACATAAT 10 V_NET_02_M02060 TRANSFAC - 99161142 99161151 8.0E-06 ACCGGATGTT 10 V_IRF1_01_M00062 TRANSFAC - 99160209 99160221 9.0E-06 CAAAAGCGAAGCC 13 V_RFX3_04_M02788 TRANSFAC - 99161193 99161215 0.0E+00 CTTCCTCCCTAGCAACGGATCTC 23 V_RFX3_04_M02788 TRANSFAC - 99161213 99161235 0.0E+00 TAGAACCCTTAGCAACCTAACTT 23 V_BSX_01_M01442 TRANSFAC + 99166123 99166138 1.0E-05 GGGGTAATTGCTGAAA 5 V_SOX12_03_M02796 TRANSFAC - 99165831 99165844 1.0E-05 TTTTTGTTGTTTTT 14 V_SP1_Q2_01_M00933 TRANSFAC + 99160812 99160821 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC - 99160810 99160822 6.0E-06 CGGGGGCGGGGTT 13 V_RNF96_01_M01199 TRANSFAC - 99160871 99160880 7.0E-06 GCCCGCAGCC 10 V_ATATA_B_M00311 TRANSFAC + 99159863 99159872 5.0E-06 GTACTTAAGC 10 V_MTF1_05_M02778 TRANSFAC + 99161111 99161126 8.0E-06 GATTCGTGTGCATTAC 16 V_SPIB_03_M02076 TRANSFAC - 99161082 99161091 3.0E-06 AGAGGAAGTG 10 V_NANOG_02_M01247 TRANSFAC + 99165830 99165849 1.0E-06 AAAAAACAACAAAAAAAAGT 20 V_TCF11_01_M00285 TRANSFAC - 99161013 99161025 8.0E-06 GTCATTTAAGCTC 13 V_ER_Q6_M00191 TRANSFAC - 99160277 99160295 6.0E-06 TCAGGAAGGAGTGACCTGA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.