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SKA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 220134 spindle and kinetochore associated complex subunit 1 chr18 + 47896391 - 47901891 47901391 Transcription Factor Binding Sites   Download all TFBS in the SKA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MYBL2_MYB_DBD_dimeric_14_1 SELEX - 47904024 47904037 4.0E-06 AACCGTTACCCTCC 14 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX - 47900321 47900329 5.0E-06 GCCACTTAA 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 47903911 47903924 8.0E-06 TGAAAATATTTTGA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 47903911 47903924 3.0E-06 TCAAAATATTTTCA 14 Pax4_MA0068.1 JASPAR - 47903892 47903921 0.0E+00 AAATATTTTCAAATATACTTAAAATCTCCA 30 Pax4_MA0068.1 JASPAR - 47903893 47903922 0.0E+00 AAAATATTTTCAAATATACTTAAAATCTCC 30 TCF7L1_HMG_full_monomeric_12_1 SELEX + 47901162 47901173 9.0E-06 AAATGTCAAAGA 12 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 47900694 47900709 4.0E-06 TAAATTTACTTAAATA 16 TEAD1_TEA_full_monomeric_10_1 SELEX - 47903646 47903655 9.0E-06 AACATTCCTA 10 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 47900694 47900709 4.0E-06 TAAATTTACTTAAATA 16 POU3F3_POU_DBD_monomeric_13_1 SELEX + 47900688 47900700 3.0E-06 ATTAAGTAAATTT 13 POU3F3_POU_DBD_monomeric_13_1 SELEX - 47900695 47900707 6.0E-06 TTTAAGTAAATTT 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 47903911 47903924 7.0E-06 TGAAAATATTTTGA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 47903911 47903924 3.0E-06 TCAAAATATTTTCA 14 NKX3-1_homeodomain_full_monomeric_9_1 SELEX - 47900321 47900329 8.0E-06 GCCACTTAA 9 MYBL2_MYB_DBD_monomeric_11_1 SELEX - 47904029 47904039 2.0E-06 TAAACCGTTAC 11 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 47903911 47903924 3.0E-06 TGAAAATATTTTGA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 47903911 47903924 3.0E-06 TCAAAATATTTTCA 14 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 47903937 47903949 0.0E+00 GGATGATGCAATG 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 47903936 47903949 0.0E+00 TGGATGATGCAATG 14 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 47900703 47900713 7.0E-06 TTAAATAAAGA 11 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 47903911 47903924 6.0E-06 TGAAAATATTTTGA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 47903911 47903924 5.0E-06 TCAAAATATTTTCA 14 Nkx3-2_MA0122.1 JASPAR + 47900321 47900329 8.0E-06 TTAAGTGGC 9 Hltf_MA0109.1 JASPAR + 47904013 47904022 1.0E-05 AACCTTATCT 10 ELF1_ETS_full_monomeric_12_1 SELEX - 47901266 47901277 8.0E-06 AACCCGGAGGTG 12 MYBL1_MYB_DBD_monomeric_11_1 SELEX - 47904029 47904039 3.0E-06 TAAACCGTTAC 11 MAFK_bZIP_full_monomeric_12_1 SELEX + 47901454 47901465 4.0E-06 AATTTTGCTTAC 12 NRF1_NRF_full_dimeric_12_1 SELEX + 47901417 47901428 1.0E-05 TGCGCCTGCGCT 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 47900701 47900713 5.0E-06 ACTTAAATAAAGA 13 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 47904034 47904043 8.0E-06 CCAATAAACC 10 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 47903912 47903925 5.0E-06 GAAAATATTTTGAC 14 V_RUSH1A_02_M01107 TRANSFAC + 47904013 47904022 1.0E-05 AACCTTATCT 10 V_FOXP1_01_M00987 TRANSFAC + 47900305 47900324 3.0E-06 AAATTTATATTTGCTCTTAA 20 V_AP2ALPHA_Q6_M01857 TRANSFAC - 47901664 47901674 9.0E-06 AGCCTCCAGCC 11 V_FREAC7_01_M00293 TRANSFAC + 47901045 47901060 2.0E-06 TTTTTATAAATACTAA 16 V_GEN_INI_B_M00315 TRANSFAC + 47901069 47901076 1.0E-05 CCTCATTT 8 V_CDX2_Q5_01_M01659 TRANSFAC + 47901047 47901057 3.0E-06 TTTATAAATAC 11 V_HMGIY_Q3_M01010 TRANSFAC + 47901026 47901040 3.0E-06 TTTGGAATTTTCTGG 15 V_BCL6_01_M01183 TRANSFAC + 47903906 47903921 9.0E-06 ATATTTGAAAATATTT 16 V_BCL6_01_M01183 TRANSFAC + 47903907 47903922 0.0E+00 TATTTGAAAATATTTT 16 V_MAFB_05_M02775 TRANSFAC + 47901454 47901470 3.0E-06 AATTTTGCTTACAGAGT 17 V_MMEF2_Q6_M00405 TRANSFAC - 47901040 47901055 3.0E-06 ATTTATAAAAACACCC 16 V_SATB1_Q3_M01723 TRANSFAC + 47900703 47900718 9.0E-06 TTAAATAAAGACCTTC 16 V_FOXJ1_04_M02854 TRANSFAC - 47903612 47903626 8.0E-06 CCATCATAACATCAT 15 V_HNF3_Q6_01_M01012 TRANSFAC + 47900307 47900324 5.0E-06 ATTTATATTTGCTCTTAA 18 V_MYB_05_M02779 TRANSFAC - 47904026 47904042 3.0E-06 CAATAAACCGTTACCCT 17 V_AP4_Q6_02_M01860 TRANSFAC + 47901350 47901362 2.0E-06 CCAGCTGTGGCCC 13 V_COUPTF_Q6_M01036 TRANSFAC + 47901016 47901038 4.0E-06 TTAGCTGCTCTTTGGAATTTTCT 23 V_HOXD13_01_M01404 TRANSFAC - 47901042 47901057 4.0E-06 GTATTTATAAAAACAC 16 V_MEF2A_Q6_M02024 TRANSFAC - 47901047 47901056 2.0E-06 TATTTATAAA 10 V_ELF4_04_M02850 TRANSFAC + 47901044 47901060 9.0E-06 GTTTTTATAAATACTAA 17 V_GEN_INI3_B_M00314 TRANSFAC + 47901069 47901076 1.0E-05 CCTCATTT 8 V_TEF_Q6_M00672 TRANSFAC + 47900699 47900710 7.0E-06 TTACTTAAATAA 12 V_TEF_Q6_M00672 TRANSFAC - 47900699 47900710 9.0E-06 TTATTTAAGTAA 12 V_POLY_C_M00212 TRANSFAC - 47904025 47904042 1.0E-06 CAATAAACCGTTACCCTC 18 V_MRF2_01_M00454 TRANSFAC - 47904081 47904094 1.0E-06 AACTACAATACAAG 14 V_HES1_Q2_M01009 TRANSFAC + 47901059 47901073 0.0E+00 AAGGCTTGTGCCTCA 15 V_ZBP89_Q4_M01816 TRANSFAC - 47901651 47901660 2.0E-06 TCCTCCCCCA 10 V_CEBPD_Q6_M00621 TRANSFAC - 47903938 47903949 2.0E-06 CATTGCATCATC 12 V_RSRFC4_Q2_M00407 TRANSFAC - 47901044 47901060 7.0E-06 TTAGTATTTATAAAAAC 17 V_IRX4_01_M01410 TRANSFAC - 47904074 47904090 5.0E-06 ACAATACAAGTTCAACA 17 V_AMEF2_Q6_M00403 TRANSFAC - 47901038 47901055 9.0E-06 ATTTATAAAAACACCCCA 18 V_MYBL1_03_M02780 TRANSFAC - 47904026 47904042 1.0E-06 CAATAAACCGTTACCCT 17 V_OCT1_04_M00138 TRANSFAC + 47903902 47903924 3.0E-06 AAGTATATTTGAAAATATTTTGA 23 V_MEF2_Q6_01_M00941 TRANSFAC - 47900703 47900714 1.0E-05 GTCTTTATTTAA 12 V_NKX3A_01_M00451 TRANSFAC + 47900687 47900698 3.0E-06 GATTAAGTAAAT 12 V_NKX3A_01_M00451 TRANSFAC - 47900697 47900708 1.0E-06 ATTTAAGTAAAT 12 V_TBP_06_M02814 TRANSFAC - 47901043 47901058 5.0E-06 AGTATTTATAAAAACA 16 V_TBP_06_M02814 TRANSFAC + 47901045 47901060 3.0E-06 TTTTTATAAATACTAA 16 V_TBP_06_M02814 TRANSFAC - 47901045 47901060 2.0E-06 TTAGTATTTATAAAAA 16 V_NR1B1_Q6_M02110 TRANSFAC + 47903950 47903959 6.0E-06 AAAGTTCAGA 10 V_TBP_01_M00471 TRANSFAC + 47901049 47901056 4.0E-06 TATAAATA 8 V_FOXL1_04_M02753 TRANSFAC + 47901045 47901061 8.0E-06 TTTTTATAAATACTAAG 17 V_HDX_01_M01333 TRANSFAC - 47901082 47901098 1.0E-05 TCGGTGAAATCAGACAC 17 V_GEN_INI2_B_M00313 TRANSFAC + 47901069 47901076 1.0E-05 CCTCATTT 8 V_TCF7_04_M02921 TRANSFAC + 47901043 47901057 5.0E-06 TGTTTTTATAAATAC 15 V_ZFP206_01_M01742 TRANSFAC + 47901417 47901427 8.0E-06 TGCGCCTGCGC 11 V_FPM315_01_M01587 TRANSFAC + 47901652 47901663 3.0E-06 GGGGGAGGACGG 12 V_LMO2COM_02_M00278 TRANSFAC - 47904015 47904023 3.0E-06 CAGATAAGG 9 V_SMAD_Q6_01_M00974 TRANSFAC + 47904040 47904050 4.0E-06 TTGGCAGACAG 11 V_OCT1_06_M00162 TRANSFAC + 47903995 47904008 4.0E-06 AAGAATTACATACT 14 V_FOXJ2_01_M00422 TRANSFAC - 47900307 47900324 6.0E-06 TTAAGAGCAAATATAAAT 18 V_SOX18_04_M02905 TRANSFAC + 47900690 47900705 6.0E-06 TAAGTAAATTTACTTA 16 V_SOX18_04_M02905 TRANSFAC - 47900690 47900705 6.0E-06 TAAGTAAATTTACTTA 16 V_CREB_02_M00113 TRANSFAC + 47901181 47901192 5.0E-06 TTGGTGACGCCA 12 V_SOX15_04_M02903 TRANSFAC + 47903943 47903957 9.0E-06 TGCAATGAAAGTTCA 15 V_ATATA_B_M00311 TRANSFAC - 47900701 47900710 4.0E-06 TTATTTAAGT 10 V_GLIS2_04_M02863 TRANSFAC - 47901045 47901058 1.0E-06 AGTATTTATAAAAA 14 V_GLIS2_04_M02863 TRANSFAC - 47903907 47903920 1.0E-05 AATATTTTCAAATA 14 V_HSF1_Q6_01_M02017 TRANSFAC + 47901030 47901043 4.0E-06 GAATTTTCTGGGGT 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.