Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TOR1A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1861 torsin family 1, member A (torsin A) chr9 - 132585941 - 132591441 132586441 Transcription Factor Binding Sites   Download all TFBS in the TOR1A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 132586571 132586583 0.0E+00 ATAAACAAAAACA 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 132588939 132588951 7.0E-06 ACAAACATTTACA 13 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 132586576 132586583 5.0E-06 ATAAACAA 8 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 132588699 132588706 5.0E-06 ATAAACAA 8 FLI1_ETS_full_monomeric_10_1 SELEX - 132586430 132586439 1.0E-05 ACCGGAAGCG 10 ERG_ETS_full_monomeric_10_1 SELEX - 132586430 132586439 8.0E-06 ACCGGAAGCG 10 FOXF2_MA0030.1 JASPAR - 132588698 132588711 3.0E-06 CACAGATAAACAAG 14 FOXL1_forkhead_full_dimeric_13_1 SELEX - 132588944 132588956 3.0E-06 TTTCAACAAACAT 13 TBX1_TBX_DBD_dimeric_23_1 SELEX + 132588713 132588735 8.0E-06 ATTCCCACCCCAACAGTGAGAGA 23 MAX_bHLH_DBD_dimeric_10_1 SELEX + 132588858 132588867 4.0E-06 AACACGTGTT 10 MAX_bHLH_DBD_dimeric_10_1 SELEX - 132588858 132588867 4.0E-06 AACACGTGTT 10 EWSR1-FLI1_MA0149.1 JASPAR - 132585485 132585502 1.0E-06 GGGAGACAGGAAGGATGG 18 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 132588939 132588952 5.0E-06 TGTAAATGTTTGTT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 132588939 132588952 0.0E+00 AACAAACATTTACA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 132588962 132588975 1.0E-06 TGAAAATATTTTTT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 132588962 132588975 0.0E+00 AAAAAATATTTTCA 14 ZNF238_C2H2_full_monomeric_13_1 SELEX + 132588878 132588890 5.0E-06 GTGCCAGATGTGC 13 CLOCK_bHLH_DBD_dimeric_10_1 SELEX + 132588858 132588867 1.0E-06 AACACGTGTT 10 CLOCK_bHLH_DBD_dimeric_10_1 SELEX - 132588858 132588867 1.0E-06 AACACGTGTT 10 ETV2_ETS_DBD_monomeric_11_1 SELEX - 132586430 132586440 9.0E-06 AACCGGAAGCG 11 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 132590513 132590521 6.0E-06 TAACCGCAA 9 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 132588939 132588952 4.0E-06 TGTAAATGTTTGTT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 132588939 132588952 1.0E-06 AACAAACATTTACA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 132588962 132588975 1.0E-06 TGAAAATATTTTTT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 132588962 132588975 1.0E-06 AAAAAATATTTTCA 14 Foxq1_MA0040.1 JASPAR + 132586574 132586584 9.0E-06 TTTTGTTTATG 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 132586573 132586583 3.0E-06 ATAAACAAAAA 11 ELK4_ETS_DBD_monomeric_10_1 SELEX - 132586430 132586439 1.0E-05 ACCGGAAGCG 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 132588939 132588952 7.0E-06 TGTAAATGTTTGTT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 132588939 132588952 4.0E-06 AACAAACATTTACA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 132588962 132588975 1.0E-06 TGAAAATATTTTTT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 132588962 132588975 0.0E+00 AAAAAATATTTTCA 14 YY2_C2H2_full_monomeric_11_1 SELEX + 132586496 132586506 4.0E-06 GCCGCCATCTT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 132586573 132586583 2.0E-06 ATAAACAAAAA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 132588945 132588955 9.0E-06 TTCAACAAACA 11 Gata1_MA0035.2 JASPAR - 132588700 132588710 8.0E-06 ACAGATAAACA 11 SMAD3_MAD_DBD_dimeric_10_1 SELEX + 132585213 132585222 8.0E-06 CGTCTAGACG 10 SMAD3_MAD_DBD_dimeric_10_1 SELEX - 132585213 132585222 8.0E-06 CGTCTAGACG 10 MGA_TBX_DBD_dimeric_18_1 SELEX + 132588705 132588722 8.0E-06 ATCTGTGAATTCCCACCC 18 ELK1_MA0028.1 JASPAR - 132586432 132586441 5.0E-06 GAACCGGAAG 10 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 132588939 132588952 7.0E-06 TGTAAATGTTTGTT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 132588939 132588952 4.0E-06 AACAAACATTTACA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 132588962 132588975 1.0E-06 TGAAAATATTTTTT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 132588962 132588975 1.0E-06 AAAAAATATTTTCA 14 MAX_MA0058.1 JASPAR - 132586566 132586575 7.0E-06 AAACACGTGG 10 Myf_MA0055.1 JASPAR + 132586326 132586337 4.0E-06 CAGCAGCAGCAG 12 FOXI1_forkhead_full_dimeric_17_1 SELEX - 132588821 132588837 3.0E-06 AAGTGGATGGTCAACAG 17 REST_MA0138.2 JASPAR + 132586306 132586326 4.0E-06 GCCTGCACCACGGACGGCGCC 21 ETV6_ETS_full_dimeric_15_1 SELEX - 132586430 132586444 0.0E+00 GAGGAACCGGAAGCG 15 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 132586576 132586583 5.0E-06 ATAAACAA 8 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 132588699 132588706 5.0E-06 ATAAACAA 8 PLAG1_MA0163.1 JASPAR - 132586556 132586569 8.0E-06 GTGGCCAACAGGGG 14 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 132588945 132588957 4.0E-06 ATTTCAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 132586571 132586583 0.0E+00 ATAAACAAAAACA 13 V_FOXP1_01_M00987 TRANSFAC + 132586576 132586595 3.0E-06 TTGTTTATGGACGTTATTTT 20 V_SAP1A_01_M01167 TRANSFAC - 132586430 132586440 4.0E-06 AACCGGAAGCG 11 V_ELK1_04_M01165 TRANSFAC - 132586430 132586440 3.0E-06 AACCGGAAGCG 11 V_YY1_02_M00069 TRANSFAC + 132586494 132586513 6.0E-06 CGGCCGCCATCTTTGTTCGG 20 V_NRSF_Q4_M01028 TRANSFAC - 132586307 132586325 2.0E-06 GCGCCGTCCGTGGTGCAGG 19 V_DMRT3_01_M01148 TRANSFAC - 132585170 132585184 6.0E-06 ATGTGGCTACATTTT 15 V_PAX4_03_M00378 TRANSFAC + 132588712 132588723 1.0E-06 AATTCCCACCCC 12 V_BCL6_01_M01183 TRANSFAC + 132588957 132588972 2.0E-06 TATCCTGAAAATATTT 16 V_ETV3_01_M01990 TRANSFAC - 132586430 132586439 9.0E-06 ACCGGAAGCG 10 V_RP58_01_M00532 TRANSFAC - 132588880 132588891 5.0E-06 AGCACATCTGGC 12 V_FOXO3A_Q1_M01137 TRANSFAC - 132586573 132586584 5.0E-06 CATAAACAAAAA 12 V_YY1_Q6_M00793 TRANSFAC + 132586456 132586464 7.0E-06 GCCATCTTT 9 V_YY1_Q6_M00793 TRANSFAC + 132586499 132586507 7.0E-06 GCCATCTTT 9 V_IRF3_05_M02767 TRANSFAC + 132585435 132585448 5.0E-06 GGGAAAGGAAACAG 14 V_FOXJ1_03_M02750 TRANSFAC - 132586571 132586586 2.0E-06 TCCATAAACAAAAACA 16 V_PITX2_Q6_M02114 TRANSFAC + 132586619 132586628 1.0E-06 TGTAATCCCA 10 V_AREB6_04_M00415 TRANSFAC - 132585157 132585165 8.0E-06 CTGTTTCTT 9 V_SP1_02_M01303 TRANSFAC - 132586169 132586179 8.0E-06 GGGGCGGGGGC 11 V_LYF1_01_M00141 TRANSFAC + 132586633 132586641 9.0E-06 TTTGGGAGG 9 V_FOXP3_01_M01599 TRANSFAC - 132586576 132586583 5.0E-06 ATAAACAA 8 V_FOXP3_01_M01599 TRANSFAC - 132588699 132588706 5.0E-06 ATAAACAA 8 V_TCFAP2E_04_M02926 TRANSFAC - 132588968 132588981 8.0E-06 AAACTTAAAAAATA 14 V_LHX8_01_M01440 TRANSFAC - 132585136 132585152 5.0E-06 ACTCCTGATTGGCTTTG 17 V_ELF4_04_M02850 TRANSFAC - 132588963 132588979 4.0E-06 ACTTAAAAAATATTTTC 17 V_FLI1_01_M02038 TRANSFAC - 132586430 132586439 7.0E-06 ACCGGAAGCG 10 V_PR_Q2_M00960 TRANSFAC + 132590541 132590550 9.0E-06 AAAAGAACAG 10 V_MYF_01_M01302 TRANSFAC + 132586326 132586337 4.0E-06 CAGCAGCAGCAG 12 V_ZFP105_03_M02827 TRANSFAC - 132586570 132586584 8.0E-06 CATAAACAAAAACAC 15 V_FKLF_Q5_M01837 TRANSFAC - 132585414 132585423 2.0E-06 GGGGTGGGAG 10 V_MYCMAX_01_M00118 TRANSFAC + 132586563 132586576 6.0E-06 TGGCCACGTGTTTT 14 V_MYCMAX_01_M00118 TRANSFAC - 132586563 132586576 6.0E-06 AAAACACGTGGCCA 14 V_HNF3G_Q4_M02015 TRANSFAC + 132588945 132588952 7.0E-06 TGTTTGTT 8 V_STAT1_01_M00224 TRANSFAC + 132586526 132586546 9.0E-06 TTTTGCTTCCGGAAACTCGGT 21 V_KROX_Q6_M00982 TRANSFAC + 132586166 132586179 2.0E-06 CCAGCCCCCGCCCC 14 V_ER81_02_M02065 TRANSFAC - 132586430 132586439 8.0E-06 ACCGGAAGCG 10 MYC_MAX_MA0059.1 JASPAR - 132586565 132586575 1.0E-05 AAACACGTGGC 11 V_HNF3_Q6_M00791 TRANSFAC - 132586571 132586583 4.0E-06 ATAAACAAAAACA 13 V_HNF3_Q6_M00791 TRANSFAC - 132588943 132588955 6.0E-06 TTCAACAAACATT 13 V_SOX_Q6_M01014 TRANSFAC + 132586502 132586514 6.0E-06 ATCTTTGTTCGGT 13 V_USF_02_M00122 TRANSFAC + 132586563 132586576 8.0E-06 TGGCCACGTGTTTT 14 V_USF_02_M00122 TRANSFAC - 132586563 132586576 8.0E-06 AAAACACGTGGCCA 14 V_GADP_01_M01258 TRANSFAC + 132586430 132586441 3.0E-06 CGCTTCCGGTTC 12 V_YY1_Q6_02_M01035 TRANSFAC + 132586496 132586506 7.0E-06 GCCGCCATCTT 11 V_REST_01_M01256 TRANSFAC - 132586309 132586330 4.0E-06 TGCTGGCGCCGTCCGTGGTGCA 22 V_REX1_03_M01744 TRANSFAC - 132586495 132586506 0.0E+00 AAGATGGCGGCC 12 V_PEBP_Q6_M00984 TRANSFAC - 132585624 132585638 3.0E-06 CATGACCACAGACGT 15 V_IRF4_03_M02768 TRANSFAC - 132588974 132588988 1.0E-05 AAAGTCGAAACTTAA 15 V_GATA1_09_M02254 TRANSFAC - 132588700 132588710 8.0E-06 ACAGATAAACA 11 V_FOXO1_Q5_M01216 TRANSFAC - 132586575 132586583 2.0E-06 ATAAACAAA 9 V_BCL6B_04_M02844 TRANSFAC + 132588713 132588728 8.0E-06 ATTCCCACCCCAACAG 16 V_FREAC2_01_M00290 TRANSFAC - 132586573 132586588 8.0E-06 CGTCCATAAACAAAAA 16 V_FREAC2_01_M00290 TRANSFAC - 132588696 132588711 8.0E-06 CACAGATAAACAAGGG 16 V_YY1_03_M02044 TRANSFAC + 132586496 132586507 3.0E-06 GCCGCCATCTTT 12 V_CAAT_01_M00254 TRANSFAC + 132585136 132585147 9.0E-06 CAAAGCCAATCA 12 V_ALPHACP1_01_M00687 TRANSFAC + 132585138 132585148 3.0E-06 AAGCCAATCAG 11 V_EHF_06_M02745 TRANSFAC - 132586528 132586542 8.0E-06 AGTTTCCGGAAGCAA 15 V_FAC1_01_M00456 TRANSFAC - 132586567 132586580 7.0E-06 AACAAAAACACGTG 14 V_MAX_01_M00119 TRANSFAC + 132586563 132586576 2.0E-06 TGGCCACGTGTTTT 14 V_MAX_01_M00119 TRANSFAC - 132586563 132586576 2.0E-06 AAAACACGTGGCCA 14 V_MAX_01_M00119 TRANSFAC + 132588856 132588869 6.0E-06 TAAACACGTGTTGC 14 V_MAX_01_M00119 TRANSFAC - 132588856 132588869 6.0E-06 GCAACACGTGTTTA 14 V_FPM315_01_M01587 TRANSFAC - 132585409 132585420 9.0E-06 GTGGGAGGAGCA 12 V_NRSF_01_M00256 TRANSFAC + 132586306 132586326 2.0E-06 GCCTGCACCACGGACGGCGCC 21 V_PITX2_Q2_M00482 TRANSFAC + 132586619 132586629 1.0E-06 TGTAATCCCAG 11 V_REST_02_M02256 TRANSFAC + 132586306 132586326 4.0E-06 GCCTGCACCACGGACGGCGCC 21 V_IRF6_03_M02770 TRANSFAC - 132588972 132588988 4.0E-06 AAAGTCGAAACTTAAAA 17 V_SAP1A_03_M02058 TRANSFAC - 132586430 132586439 7.0E-06 ACCGGAAGCG 10 V_EWSR1FLI1_01_M02252 TRANSFAC - 132585485 132585502 1.0E-06 GGGAGACAGGAAGGATGG 18 V_FOXJ2_01_M00422 TRANSFAC - 132588940 132588957 1.0E-06 ATTTCAACAAACATTTAC 18 V_FOXO1_04_M01969 TRANSFAC - 132586564 132586583 2.0E-06 ATAAACAAAAACACGTGGCC 20 V_FOXO1_01_M00473 TRANSFAC - 132586575 132586584 1.0E-06 CATAAACAAA 10 V_ERG_02_M01985 TRANSFAC - 132586430 132586439 6.0E-06 ACCGGAAGCG 10 V_FOXO4_01_M00472 TRANSFAC - 132586573 132586583 4.0E-06 ATAAACAAAAA 11 V_MYCMAX_03_M00615 TRANSFAC + 132588853 132588872 2.0E-06 CCATAAACACGTGTTGCGTT 20 V_MYCMAX_03_M00615 TRANSFAC - 132588853 132588872 2.0E-06 AACGCAACACGTGTTTATGG 20 V_NFYA_Q5_M02106 TRANSFAC + 132585138 132585151 2.0E-06 AAGCCAATCAGGAG 14 V_PAX4_04_M00380 TRANSFAC - 132586567 132586596 1.0E-06 AAAAATAACGTCCATAAACAAAAACACGTG 30 V_ETV3_02_M02068 TRANSFAC - 132586430 132586439 9.0E-06 ACCGGAAGCG 10 V_NANOG_02_M01247 TRANSFAC + 132585127 132585146 9.0E-06 TGGGAAAGACAAAGCCAATC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.