Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

OIT3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 170392 oncoprotein induced transcript 3 chr10 + 74648338 - 74653838 74653338 Transcription Factor Binding Sites   Download all TFBS in the OIT3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 74649312 74649319 5.0E-06 ATAAACAA 8 IRF7_IRF_DBD_dimeric_14_1 SELEX + 74649149 74649162 1.0E-06 CAGAAAGTGAAACA 14 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 74649654 74649666 5.0E-06 TTAAGTGGTTAAA 13 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 74652244 74652257 1.0E-06 TAATAAGTTAATGG 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 74652244 74652257 4.0E-06 CCATTAACTTATTA 14 SRY_HMG_DBD_dimeric_13_2 SELEX + 74649341 74649353 6.0E-06 TGATTATTATTCA 13 IRF8_IRF_full_dimeric_14_1 SELEX + 74649149 74649162 4.0E-06 CAGAAAGTGAAACA 14 Tp53_p53l_DBD_dimeric_18_2 SELEX + 74649227 74649244 3.0E-06 AACGTGTACACACATGTT 18 STAT1_MA0137.2 JASPAR + 74653141 74653155 1.0E-06 CAATTCCTAGAAGTC 15 Tp73_p53l_DBD_dimeric_18_1 SELEX - 74649227 74649244 1.0E-06 AACATGTGTGTACACGTT 18 SOX9_HMG_DBD_monomeric_9_1 SELEX + 74653250 74653258 4.0E-06 AAACAATAG 9 POU2F2_POU_DBD_monomeric_11_1 SELEX - 74649162 74649172 5.0E-06 ATATGGTAATT 11 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX - 74649654 74649662 2.0E-06 ACCACTTAA 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 74648509 74648522 8.0E-06 TGAAAATATTAAGT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 74648509 74648522 3.0E-06 ACTTAATATTTTCA 14 Pax4_MA0068.1 JASPAR + 74649159 74649188 9.0E-06 AACAATTACCATATGATCCAGCAATTCCAC 30 Pax4_MA0068.1 JASPAR - 74649323 74649352 8.0E-06 GAATAATAATCAGTTGTGTGCACACACCAT 30 Pax4_MA0068.1 JASPAR - 74649514 74649543 7.0E-06 AATAACTTGTCATTCTTCCCTCCCTCACCC 30 IRF1_MA0050.1 JASPAR + 74649151 74649162 2.0E-06 GAAAGTGAAACA 12 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 74648509 74648522 2.0E-06 ACTTAATATTTTCA 14 NKX3-1_homeodomain_full_monomeric_9_1 SELEX - 74649654 74649662 2.0E-06 ACCACTTAA 9 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 74649537 74649551 3.0E-06 CATTAAACAATAACT 15 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 74652240 74652253 4.0E-06 AACTTAATAAGTTA 14 SRY_MA0084.1 JASPAR - 74649541 74649549 1.0E-06 TTAAACAAT 9 SRY_MA0084.1 JASPAR + 74653248 74653256 9.0E-06 GAAAACAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 74648509 74648522 6.0E-06 TGAAAATATTAAGT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 74648509 74648522 3.0E-06 ACTTAATATTTTCA 14 RFX3_RFX_DBD_dimeric_15_1 SELEX - 74652176 74652190 9.0E-06 TGTTGCTAAGTATCA 15 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 74653140 74653156 1.0E-06 TGACTTCTAGGAATTGA 17 SOX9_HMG_full_dimeric_16_3 SELEX + 74649343 74649358 9.0E-06 ATTATTATTCAGCCAT 16 SOX9_HMG_full_dimeric_16_3 SELEX - 74649453 74649468 7.0E-06 ATGTAAGTGGAGTCAT 16 SOX14_HMG_DBD_dimeric_15_1 SELEX - 74649340 74649354 5.0E-06 CTGAATAATAATCAG 15 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 74649538 74649550 8.0E-06 GTTATTGTTTAAT 13 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 74649653 74649662 2.0E-06 ACCACTTAAG 10 TBX15_TBX_DBD_dimeric_19_1 SELEX + 74649063 74649081 3.0E-06 TGGTGAGAAATTGGAACCC 19 POU3F1_POU_DBD_monomeric_12_1 SELEX - 74649161 74649172 7.0E-06 ATATGGTAATTG 12 IRF9_IRF_full_trimeric_15_1 SELEX + 74649148 74649162 8.0E-06 TCAGAAAGTGAAACA 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 74649207 74649221 7.0E-06 AAGAATTGAAAGTAG 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 74648509 74648522 4.0E-06 ACTTAATATTTTCA 14 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 74649414 74649426 7.0E-06 CTAAATGAATCAA 13 POU2F1_POU_DBD_monomeric_12_1 SELEX - 74649162 74649173 7.0E-06 CATATGGTAATT 12 FOXI1_forkhead_full_dimeric_17_1 SELEX + 74653239 74653255 9.0E-06 TTCTTGAGAGAAAACAA 17 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 74649194 74649203 5.0E-06 GACATATGCC 10 SOX9_MA0077.1 JASPAR + 74653250 74653258 7.0E-06 AAACAATAG 9 Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 74649312 74649319 5.0E-06 ATAAACAA 8 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 74652244 74652257 1.0E-06 TAATAAGTTAATGG 14 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 74652244 74652257 1.0E-06 CCATTAACTTATTA 14 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 74649537 74649551 3.0E-06 CATTAAACAATAACT 15 POU3F2_POU_DBD_monomeric_12_1 SELEX - 74649161 74649172 5.0E-06 ATATGGTAATTG 12 TP63_p53l_DBD_dimeric_18_1 SELEX - 74649227 74649244 6.0E-06 AACATGTGTGTACACGTT 18 RREB1_MA0073.1 JASPAR - 74649584 74649603 4.0E-06 CCACCAACCACCTCCAAAAC 20 RORA_2_MA0072.1 JASPAR + 74649366 74649379 6.0E-06 TGGAATTGGGTCAC 14 HNF1A_MA0046.1 JASPAR + 74649537 74649550 4.0E-06 AGTTATTGTTTAAT 14 HNF1A_MA0046.1 JASPAR + 74652249 74652262 1.0E-05 AGTTAATGGTCAAA 14 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 74649314 74649325 9.0E-06 AAACAAAACATG 12 V_CEBPG_Q6_M00622 TRANSFAC - 74653131 74653143 1.0E-06 TTGATTTCACAAT 13 V_STAT5A_Q6_M01890 TRANSFAC - 74653144 74653156 3.0E-06 TGACTTCTAGGAA 13 V_FREAC7_01_M00293 TRANSFAC + 74649307 74649322 3.0E-06 AATGGATAAACAAAAC 16 V_ZSCAN4_03_M02838 TRANSFAC - 74649324 74649340 2.0E-06 GTTGTGTGCACACACCA 17 V_ZSCAN4_03_M02838 TRANSFAC + 74649325 74649341 3.0E-06 GGTGTGTGCACACAACT 17 V_GEN_INI_B_M00315 TRANSFAC + 74653187 74653194 1.0E-05 CCTCATTT 8 V_BCL6_Q3_01_M02085 TRANSFAC + 74653143 74653152 6.0E-06 ATTCCTAGAA 10 V_POU3F3_01_M03090 TRANSFAC - 74649543 74649559 1.0E-05 TCTGTATGCATTAAACA 17 V_SRY_07_M02813 TRANSFAC - 74649339 74649354 8.0E-06 CTGAATAATAATCAGT 16 V_FOXA2_04_M02749 TRANSFAC + 74649307 74649323 9.0E-06 AATGGATAAACAAAACA 17 V_BCL6B_03_M02740 TRANSFAC - 74649476 74649491 4.0E-06 TGTTTCTATGAATTTG 16 V_BCL6B_03_M02740 TRANSFAC - 74653140 74653155 6.0E-06 GACTTCTAGGAATTGA 16 V_NKX29_01_M01352 TRANSFAC + 74649652 74649668 5.0E-06 ACTTAAGTGGTTAAAAT 17 V_BCL6_01_M01183 TRANSFAC - 74649206 74649221 5.0E-06 CTACTTTCAATTCTTT 16 V_GM397_03_M02760 TRANSFAC - 74649324 74649340 5.0E-06 GTTGTGTGCACACACCA 17 V_GM397_03_M02760 TRANSFAC + 74649325 74649341 9.0E-06 GGTGTGTGCACACAACT 17 V_SOX5_01_M00042 TRANSFAC - 74649539 74649548 2.0E-06 TAAACAATAA 10 V_FOXJ2_02_M00423 TRANSFAC - 74648510 74648523 3.0E-06 GACTTAATATTTTC 14 V_FOXJ1_04_M02854 TRANSFAC + 74649380 74649394 6.0E-06 ATGCCATAACAAGGA 15 V_OCTAMER_01_M01324 TRANSFAC - 74649543 74649559 1.0E-05 TCTGTATGCATTAAACA 17 V_ISL2_01_M01328 TRANSFAC - 74652240 74652255 9.0E-06 ATTAACTTATTAAGTT 16 V_IRF_Q6_01_M00972 TRANSFAC + 74649151 74649161 1.0E-06 GAAAGTGAAAC 11 V_SRY_02_M00160 TRANSFAC + 74649312 74649323 3.0E-06 ATAAACAAAACA 12 V_SRY_02_M00160 TRANSFAC + 74653248 74653259 0.0E+00 GAAAACAATAGG 12 V_IRF2_Q6_M01882 TRANSFAC + 74649149 74649164 3.0E-06 CAGAAAGTGAAACAAT 16 V_IRF2_Q6_M01882 TRANSFAC + 74649206 74649221 8.0E-06 AAAGAATTGAAAGTAG 16 V_HNF3_Q6_01_M01012 TRANSFAC - 74649306 74649323 3.0E-06 TGTTTTGTTTATCCATTC 18 V_STAT5B_01_M00459 TRANSFAC + 74653141 74653155 3.0E-06 CAATTCCTAGAAGTC 15 V_STAT5B_01_M00459 TRANSFAC - 74653141 74653155 8.0E-06 GACTTCTAGGAATTG 15 V_FOXJ1_03_M02750 TRANSFAC + 74649309 74649324 2.0E-06 TGGATAAACAAAACAT 16 V_DLX2_01_M01468 TRANSFAC + 74649157 74649172 7.0E-06 GAAACAATTACCATAT 16 V_NKX24_01_M01350 TRANSFAC - 74649650 74649665 8.0E-06 TTAACCACTTAAGTGT 16 V_SOX21_03_M02803 TRANSFAC + 74649339 74649354 9.0E-06 ACTGATTATTATTCAG 16 V_SOX21_03_M02803 TRANSFAC - 74649339 74649354 9.0E-06 CTGAATAATAATCAGT 16 V_FOXP3_01_M01599 TRANSFAC + 74649312 74649319 5.0E-06 ATAAACAA 8 V_BRN2_01_M00145 TRANSFAC + 74649408 74649423 1.0E-06 CACATGCTAAATGAAT 16 V_CEBPB_01_M00109 TRANSFAC + 74653129 74653142 7.0E-06 ACATTGTGAAATCA 14 V_CDP_04_M01344 TRANSFAC - 74649338 74649352 2.0E-06 GAATAATAATCAGTT 15 V_STAT4_Q4_M01666 TRANSFAC + 74649480 74649493 2.0E-06 TTCATAGAAACACA 14 V_STAT4_Q4_M01666 TRANSFAC + 74653144 74653157 4.0E-06 TTCCTAGAAGTCAC 14 V_SOX7_03_M02807 TRANSFAC - 74649532 74649553 1.0E-06 TGCATTAAACAATAACTTGTCA 22 V_GEN_INI3_B_M00314 TRANSFAC + 74653187 74653194 1.0E-05 CCTCATTT 8 V_HOXA6_01_M01392 TRANSFAC + 74649157 74649172 8.0E-06 GAAACAATTACCATAT 16 V_POU3F2_01_M00463 TRANSFAC - 74649541 74649554 4.0E-06 ATGCATTAAACAAT 14 V_DBX2_01_M01360 TRANSFAC + 74652281 74652296 6.0E-06 TGTTAGTAATGAAGTA 16 V_OCT1_03_M00137 TRANSFAC + 74652283 74652295 8.0E-06 TTAGTAATGAAGT 13 V_TBX18_01_M01262 TRANSFAC + 74649063 74649081 3.0E-06 TGGTGAGAAATTGGAACCC 19 V_HNF1_Q6_M00790 TRANSFAC + 74649536 74649553 4.0E-06 AAGTTATTGTTTAATGCA 18 V_NKX31_02_M02782 TRANSFAC - 74649650 74649666 0.0E+00 TTTAACCACTTAAGTGT 17 V_NKX26_01_M01322 TRANSFAC - 74649650 74649665 1.0E-06 TTAACCACTTAAGTGT 16 V_POLY_C_M00212 TRANSFAC + 74649052 74649069 4.0E-06 AAATAAAACGTTGGTGAG 18 V_P53_03_M01651 TRANSFAC + 74649226 74649245 5.0E-06 AAACGTGTACACACATGTTC 20 V_P53_03_M01651 TRANSFAC - 74649226 74649245 5.0E-06 GAACATGTGTGTACACGTTT 20 V_IRF3_Q3_M01279 TRANSFAC - 74649152 74649164 9.0E-06 ATTGTTTCACTTT 13 V_HNF3_Q6_M00791 TRANSFAC + 74649308 74649320 7.0E-06 ATGGATAAACAAA 13 V_IRF_Q6_M00772 TRANSFAC - 74649208 74649222 2.0E-06 CCTACTTTCAATTCT 15 V_HNF1_Q6_01_M01011 TRANSFAC - 74649534 74649554 9.0E-06 ATGCATTAAACAATAACTTGT 21 V_HNF1_Q6_01_M01011 TRANSFAC - 74652238 74652258 1.0E-05 ACCATTAACTTATTAAGTTGT 21 V_TTF1_Q6_M00794 TRANSFAC - 74653237 74653248 7.0E-06 CTCTCAAGAATT 12 V_NKX22_02_M01372 TRANSFAC - 74649649 74649665 1.0E-06 TTAACCACTTAAGTGTA 17 V_SOX18_03_M02801 TRANSFAC - 74653245 74653260 6.0E-06 TCCTATTGTTTTCTCT 16 V_CUX1_04_M02959 TRANSFAC - 74649338 74649352 2.0E-06 GAATAATAATCAGTT 15 V_OCT1_04_M00138 TRANSFAC + 74649403 74649425 1.0E-05 GAAGACACATGCTAAATGAATCA 23 V_OCT1_04_M00138 TRANSFAC + 74649465 74649487 3.0E-06 ACATGATTCGTCAAATTCATAGA 23 V_HBP1_03_M02762 TRANSFAC + 74649301 74649316 1.0E-06 CAAATGAATGGATAAA 16 V_SOX12_04_M02900 TRANSFAC + 74649485 74649500 8.0E-06 AGAAACACAAAGTAAC 16 V_ZBRK1_01_M01105 TRANSFAC - 74652261 74652275 3.0E-06 GGGACACAGGCAATT 15 V_MEF2_04_M00233 TRANSFAC - 74652158 74652179 1.0E-06 ATCAGTGCTTTAAACAGAAAAA 22 V_ATF1_04_M02842 TRANSFAC + 74649529 74649542 8.0E-06 GAATGACAAGTTAT 14 V_STAT3_03_M01595 TRANSFAC - 74653139 74653154 4.0E-06 ACTTCTAGGAATTGAT 16 V_IK3_01_M00088 TRANSFAC + 74653230 74653242 9.0E-06 TGCAGGGAATTCT 13 V_SOX9_B1_M00410 TRANSFAC + 74653247 74653260 0.0E+00 AGAAAACAATAGGA 14 V_NKX23_01_M01457 TRANSFAC - 74649652 74649667 5.0E-06 TTTTAACCACTTAAGT 16 V_FOXO1_Q5_M01216 TRANSFAC + 74649312 74649320 2.0E-06 ATAAACAAA 9 V_NKX32_02_M01482 TRANSFAC - 74649650 74649666 0.0E+00 TTTAACCACTTAAGTGT 17 V_ATF1_Q6_M00691 TRANSFAC - 74653170 74653180 6.0E-06 CCTTCACGTCA 11 V_SOX15_03_M02799 TRANSFAC + 74649154 74649170 8.0E-06 AGTGAAACAATTACCAT 17 V_SOX15_03_M02799 TRANSFAC - 74649535 74649551 8.0E-06 CATTAAACAATAACTTG 17 V_NKX25_03_M01414 TRANSFAC - 74649650 74649665 7.0E-06 TTAACCACTTAAGTGT 16 V_MRG2_01_M01395 TRANSFAC - 74649528 74649543 9.0E-06 AATAACTTGTCATTCT 16 V_HNF1_01_M00132 TRANSFAC + 74649537 74649551 2.0E-06 AGTTATTGTTTAATG 15 V_FOXL1_04_M02753 TRANSFAC + 74649307 74649323 8.0E-06 AATGGATAAACAAAACA 17 V_NKX3A_02_M01383 TRANSFAC - 74649651 74649667 8.0E-06 TTTTAACCACTTAAGTG 17 V_HDX_01_M01333 TRANSFAC + 74653131 74653147 2.0E-06 ATTGTGAAATCAATTCC 17 V_GEN_INI2_B_M00313 TRANSFAC + 74653187 74653194 1.0E-05 CCTCATTT 8 V_NKX22_01_M00485 TRANSFAC + 74648517 74648526 9.0E-06 TTAAGTCGTT 10 V_NKX22_01_M00485 TRANSFAC + 74649654 74649663 1.0E-06 TTAAGTGGTT 10 V_MSX1_01_M00394 TRANSFAC - 74649443 74649451 7.0E-06 CAGTAATTG 9 V_CEBPB_Q6_M01896 TRANSFAC + 74653132 74653141 7.0E-06 TTGTGAAATC 10 V_OCT1_07_M00248 TRANSFAC - 74649162 74649173 1.0E-06 CATATGGTAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC - 74649150 74649163 1.0E-06 TTGTTTCACTTTCT 14 V_IRF1_Q6_01_M01881 TRANSFAC - 74649207 74649220 8.0E-06 TACTTTCAATTCTT 14 V_P63_01_M01656 TRANSFAC + 74649226 74649245 8.0E-06 AAACGTGTACACACATGTTC 20 V_P63_01_M01656 TRANSFAC - 74649226 74649245 5.0E-06 GAACATGTGTGTACACGTTT 20 V_DMRT2_01_M01147 TRANSFAC + 74649151 74649166 1.0E-06 GAAAGTGAAACAATTA 16 V_STAT5A_01_M00457 TRANSFAC + 74653141 74653155 3.0E-06 CAATTCCTAGAAGTC 15 V_STAT5A_01_M00457 TRANSFAC - 74653141 74653155 2.0E-06 GACTTCTAGGAATTG 15 V_SOX1_03_M02802 TRANSFAC - 74649299 74649314 6.0E-06 TATCCATTCATTTGTT 16 V_FOXO1_01_M00473 TRANSFAC + 74649311 74649320 7.0E-06 GATAAACAAA 10 V_RFX3_04_M02788 TRANSFAC + 74652044 74652066 9.0E-06 AATCAATCCTGGCAACAAGTCTG 23 V_RFX3_04_M02788 TRANSFAC + 74652174 74652196 1.0E-06 ACTGATACTTAGCAACACTATCC 23 V_SRY_05_M02917 TRANSFAC + 74653245 74653261 3.0E-06 AGAGAAAACAATAGGAG 17 V_LHX4_01_M01421 TRANSFAC - 74649335 74649351 1.0E-05 AATAATAATCAGTTGTG 17 V_FOXO4_01_M00472 TRANSFAC + 74649312 74649322 2.0E-06 ATAAACAAAAC 11 V_BARX1_01_M01340 TRANSFAC + 74649157 74649172 4.0E-06 GAAACAATTACCATAT 16 V_HNF1A_01_M02162 TRANSFAC + 74649537 74649550 4.0E-06 AGTTATTGTTTAAT 14 V_HNF1A_01_M02162 TRANSFAC + 74652249 74652262 1.0E-05 AGTTAATGGTCAAA 14 V_DMRT1_01_M01146 TRANSFAC - 74649488 74649502 6.0E-06 ATGTTACTTTGTGTT 15 V_DMRT1_01_M01146 TRANSFAC + 74653124 74653138 5.0E-06 CTGCAACATTGTGAA 15 V_STAT1_05_M01260 TRANSFAC - 74653134 74653155 1.0E-06 GACTTCTAGGAATTGATTTCAC 22 V_MIF1_01_M00279 TRANSFAC - 74652174 74652191 8.0E-06 GTGTTGCTAAGTATCAGT 18 V_FOXK1_03_M02752 TRANSFAC + 74649307 74649323 8.0E-06 AATGGATAAACAAAACA 17 V_PAX4_04_M00380 TRANSFAC + 74648315 74648344 1.0E-06 ATAAAATTCTCCTCCACCCAGAAACACTCC 7 V_PAX4_04_M00380 TRANSFAC - 74649513 74649542 7.0E-06 ATAACTTGTCATTCTTCCCTCCCTCACCCC 30 V_PAX4_04_M00380 TRANSFAC - 74649559 74649588 5.0E-06 AAAACTTTGTCATCTTCCCAAACTGACACT 30 V_SOX9_Q4_M01284 TRANSFAC - 74652085 74652095 7.0E-06 AAACAGAGGAC 11 V_RORA2_01_M00157 TRANSFAC + 74649367 74649379 6.0E-06 GGAATTGGGTCAC 13 V_SOX14_03_M02798 TRANSFAC - 74649339 74649354 8.0E-06 CTGAATAATAATCAGT 16 V_NANOG_02_M01247 TRANSFAC + 74653244 74653263 9.0E-06 GAGAGAAAACAATAGGAGGA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.