Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DAO Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1610 D-amino-acid oxidase chr12 + 109268856 - 109274356 109273856 Transcription Factor Binding Sites   Download all TFBS in the DAO promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 109278380 109278398 0.0E+00 CGGCCAGTAGGTGGCAGAG 19 PAX6_PAX_DBD_monomeric_19_1 SELEX + 109275150 109275168 0.0E+00 CTACACGCATGAATGATTT 19 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 109275130 109275145 5.0E-06 TAAGTCCAAAAGCTCA 16 Pax6_MA0069.1 JASPAR + 109275151 109275164 1.0E-06 TACACGCATGAATG 14 EBF1_EBF_full_dimeric_14_1 SELEX + 109270002 109270015 7.0E-06 AGTCCCCTGGGAGA 14 EBF1_EBF_full_dimeric_14_1 SELEX - 109270002 109270015 7.0E-06 TCTCCCAGGGGACT 14 IRF8_IRF_full_dimeric_14_1 SELEX + 109270639 109270652 3.0E-06 ACGAAACCGCAACC 14 PAX5_PAX_DBD_monomeric_18_1 SELEX + 109275150 109275167 1.0E-06 CTACACGCATGAATGATT 18 EWSR1-FLI1_MA0149.1 JASPAR - 109269907 109269924 3.0E-06 AAAAGGAAGGAAGGGAGT 18 PAX2_PAX_DBD_monomeric_18_1 SELEX + 109275150 109275167 2.0E-06 CTACACGCATGAATGATT 18 PAX1_PAX_DBD_monomeric_17_1 SELEX + 109275150 109275166 4.0E-06 CTACACGCATGAATGAT 17 MYBL1_MYB_DBD_dimeric_12_2 SELEX - 109278372 109278383 3.0E-06 GCCGTTAACTTT 12 RUNX3_RUNX_full_monomeric_10_1 SELEX - 109269922 109269931 1.0E-06 AAACCACAAA 10 RUNX3_RUNX_full_monomeric_10_1 SELEX + 109270642 109270651 7.0E-06 AAACCGCAAC 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 109269923 109269931 8.0E-06 AAACCACAA 9 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 109270642 109270650 3.0E-06 AAACCGCAA 9 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 109278342 109278358 3.0E-06 TAGGTTATTAGAGGTTG 17 TCF4_bHLH_full_dimeric_10_1 SELEX + 109269987 109269996 3.0E-06 CACACCTGTA 10 ESR1_MA0112.2 JASPAR - 109275891 109275910 1.0E-06 AGCCCAGGCCAGCCTGACTC 20 NFATC1_NFAT_full_dimeric_20_1 SELEX - 109269852 109269871 1.0E-06 GCTGGAAACAAAGTTTTTAA 20 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 109275850 109275866 5.0E-06 TGCTTGCCAGTAAATCA 17 CTCF_C2H2_full_monomeric_17_1 SELEX - 109278381 109278397 8.0E-06 TCTGCCACCTACTGGCC 17 PAX9_PAX_DBD_monomeric_17_1 SELEX + 109275150 109275166 5.0E-06 CTACACGCATGAATGAT 17 IRF9_IRF_full_trimeric_15_1 SELEX + 109270638 109270652 1.0E-06 TACGAAACCGCAACC 15 Evi1_MA0029.1 JASPAR + 109269938 109269951 5.0E-06 AAGAAAAGATCAGC 14 FEV_MA0156.1 JASPAR - 109270665 109270672 1.0E-05 CAGGAAAT 8 Tp53_p53l_DBD_dimeric_17_1 SELEX - 109275199 109275215 1.0E-05 ACAAGCCAGAGACAGAT 17 IRF4_IRF_full_dimeric_15_1 SELEX + 109270639 109270653 1.0E-06 ACGAAACCGCAACCT 15 IRF5_IRF_full_dimeric_14_1 SELEX + 109270639 109270652 3.0E-06 ACGAAACCGCAACC 14 RUNX1_MA0002.2 JASPAR + 109269921 109269931 1.0E-06 TTTTGTGGTTT 11 IRF3_IRF_full_trimeric_21_1 SELEX + 109270633 109270653 5.0E-06 GGGGTTACGAAACCGCAACCT 21 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 109275131 109275145 8.0E-06 AAGTCCAAAAGCTCA 15 V_EBF_Q6_M00977 TRANSFAC + 109270003 109270013 4.0E-06 GTCCCCTGGGA 11 V_OSF2_Q6_M00731 TRANSFAC - 109269922 109269929 1.0E-05 ACCACAAA 8 V_BCL6B_03_M02740 TRANSFAC - 109270663 109270678 8.0E-06 TCTTTTCAGGAAATGC 16 V_ESR1_01_M02261 TRANSFAC - 109275891 109275910 1.0E-06 AGCCCAGGCCAGCCTGACTC 20 V_AML3_Q6_M01856 TRANSFAC - 109269923 109269930 1.0E-05 AACCACAA 8 V_DR4_Q2_M00965 TRANSFAC - 109278342 109278358 6.0E-06 CAACCTCTAATAACCTA 17 V_HOXD1_01_M01448 TRANSFAC + 109275138 109275154 6.0E-06 AAAGCTCATTACCTACA 17 V_PITX2_Q6_M02114 TRANSFAC + 109269993 109270002 1.0E-06 TGTAATCCCA 10 V_RPC155_01_M01798 TRANSFAC + 109270040 109270055 0.0E+00 CCAGAAGTTCGAGACC 16 V_EVX2_01_M01386 TRANSFAC - 109275138 109275154 8.0E-06 TGTAGGTAATGAGCTTT 17 V_BACH1_01_M00495 TRANSFAC + 109275886 109275900 7.0E-06 CTTATGAGTCAGGCT 15 V_TCFAP2C_03_M02821 TRANSFAC - 109278329 109278343 8.0E-06 TATGCTTGAGGGGAT 15 V_RUNX1_01_M02257 TRANSFAC + 109269921 109269931 1.0E-06 TTTTGTGGTTT 11 V_AML2_01_M01759 TRANSFAC - 109269923 109269930 1.0E-05 AACCACAA 8 V_RXRA_04_M02895 TRANSFAC + 109278337 109278352 6.0E-06 AAGCATAGGTTATTAG 16 V_EVI1_01_M00078 TRANSFAC + 109269934 109269949 5.0E-06 ATACAAGAAAAGATCA 16 V_TATA_C_M00216 TRANSFAC + 109269849 109269858 6.0E-06 ACTTTAAAAA 10 V_USF_02_M00122 TRANSFAC + 109275842 109275855 2.0E-06 AAACCATGTGATTT 14 V_USF_02_M00122 TRANSFAC - 109275842 109275855 2.0E-06 AAATCACATGGTTT 14 V_PEBP_Q6_M00984 TRANSFAC - 109269919 109269933 6.0E-06 CTAAACCACAAAAGG 15 V_ERBETA_Q5_M01875 TRANSFAC + 109275893 109275907 4.0E-06 GTCAGGCTGGCCTGG 15 V_IRF4_03_M02768 TRANSFAC + 109270635 109270649 5.0E-06 GGTTACGAAACCGCA 15 V_AP1_C_M00199 TRANSFAC + 109275889 109275897 3.0E-06 ATGAGTCAG 9 V_CTCF_02_M01259 TRANSFAC + 109278377 109278396 0.0E+00 TAACGGCCAGTAGGTGGCAG 20 V_CTCF_02_M01259 TRANSFAC - 109278460 109278479 1.0E-06 AAAGACCCAGCAGAGGGCAC 20 V_CTCF_01_M01200 TRANSFAC + 109278379 109278398 0.0E+00 ACGGCCAGTAGGTGGCAGAG 20 V_CTCF_01_M01200 TRANSFAC - 109278458 109278477 3.0E-06 AGACCCAGCAGAGGGCACGA 20 V_BLIMP1_Q6_M01066 TRANSFAC - 109278315 109278330 4.0E-06 ATGGATGGGAAATTGA 16 V_ISGF4G_04_M02875 TRANSFAC + 109269844 109269857 5.0E-06 GAAAAACTTTAAAA 14 V_POU6F1_02_M01462 TRANSFAC - 109275137 109275153 6.0E-06 GTAGGTAATGAGCTTTT 17 V_AREB6_02_M00413 TRANSFAC + 109269986 109269997 6.0E-06 TCACACCTGTAA 12 V_NKX3A_02_M01383 TRANSFAC - 109275870 109275886 7.0E-06 GCCTAGGTGCTTAAATG 17 V_HDX_01_M01333 TRANSFAC - 109275158 109275174 1.0E-06 TAGGTAAAATCATTCAT 17 V_PARP_Q3_M01211 TRANSFAC - 109269074 109269083 2.0E-06 TAGGAAATAG 10 V_PITX2_Q2_M00482 TRANSFAC + 109269993 109270003 1.0E-06 TGTAATCCCAG 11 V_T3RBETA_Q6_01_M02119 TRANSFAC + 109269876 109269892 8.0E-06 ATGAGACAGGAGGTCAG 17 V_TCFAP2A_03_M02819 TRANSFAC - 109278329 109278343 7.0E-06 TATGCTTGAGGGGAT 15 V_SOX14_04_M02901 TRANSFAC - 109278317 109278333 1.0E-06 GGGATGGATGGGAAATT 17 V_POU6F1_03_M01479 TRANSFAC - 109275137 109275153 6.0E-06 GTAGGTAATGAGCTTTT 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 109269907 109269924 3.0E-06 AAAAGGAAGGAAGGGAGT 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 109269924 109269931 1.0E-05 TGTGGTTT 8 V_HOXB3_01_M01330 TRANSFAC + 109275138 109275154 5.0E-06 AAAGCTCATTACCTACA 17 V_ARP1_01_M00155 TRANSFAC - 109270035 109270050 7.0E-06 CGAACTTCTGGCCTCA 16 V_ARP1_01_M00155 TRANSFAC - 109275130 109275145 1.0E-06 TGAGCTTTTGGACTTA 16 V_FEV_01_M02269 TRANSFAC - 109270665 109270672 1.0E-05 CAGGAAAT 8 V_PAX6_01_M00097 TRANSFAC + 109275147 109275167 0.0E+00 TACCTACACGCATGAATGATT 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.