Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DAD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1603 defender against cell death 1 chr14 - 23057643 - 23063143 23058143 Transcription Factor Binding Sites   Download all TFBS in the DAD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 23058760 23058777 8.0E-06 CCAATAAATGTTGGCATT 18 SP8_C2H2_DBD_monomeric_12_1 SELEX - 23058677 23058688 5.0E-06 ACCACACCCACT 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 23058678 23058688 6.0E-06 ACCACACCCAC 11 NEUROD2_bHLH_full_dimeric_10_1 SELEX - 23058896 23058905 1.0E-05 ACCATATGCT 10 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 23057834 23057851 2.0E-06 TCACTTATAGAACCATTA 18 SOX10_HMG_full_dimeric_14_1 SELEX - 23057046 23057059 6.0E-06 TGTATTTTCAGTCC 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 23057835 23057851 1.0E-06 CACTTATAGAACCATTA 17 ETV5_ETS_DBD_monomeric_10_1 SELEX + 23058122 23058131 6.0E-06 ACCGGATGTG 10 ETV3_ETS_DBD_monomeric_10_1 SELEX + 23058122 23058131 6.0E-06 ACCGGATGTG 10 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 23058649 23058665 4.0E-06 GTAATTAAGTCTAAACT 17 RFX4_RFX_DBD_dimeric_16_1 SELEX + 23058365 23058380 2.0E-06 AGTTGCTCTGGCAACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 23058365 23058380 7.0E-06 TGTTGCCAGAGCAACT 16 ZNF435_C2H2_full_dimeric_18_1 SELEX - 23058365 23058382 1.0E-05 CTTGTTGCCAGAGCAACT 18 EWSR1-FLI1_MA0149.1 JASPAR + 23058696 23058713 1.0E-06 GGGAGGCAGGGAGGAAGC 18 PDX1_homeodomain_DBD_monomeric_8_1 SELEX - 23058658 23058665 5.0E-06 GTAATTAA 8 ETV1_ETS_DBD_monomeric_10_1 SELEX + 23058122 23058131 9.0E-06 ACCGGATGTG 10 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 23058762 23058775 5.0E-06 AATAAATGTTGGCA 14 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX - 23058657 23058666 4.0E-06 AGTAATTAAG 10 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX - 23058657 23058666 5.0E-06 AGTAATTAAG 10 ETV2_ETS_DBD_monomeric_11_1 SELEX + 23055571 23055581 7.0E-06 AACAGGAAATT 11 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 23058672 23058687 1.0E-06 CCACACCCACTCACTC 16 REL_MA0101.1 JASPAR - 23055575 23055584 6.0E-06 TGGAATTTCC 10 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX - 23058658 23058665 5.0E-06 GTAATTAA 8 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 23058365 23058380 9.0E-06 AGTTGCTCTGGCAACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 23058365 23058380 5.0E-06 TGTTGCCAGAGCAACT 16 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 23058762 23058775 5.0E-06 AATAAATGTTGGCA 14 MYBL2_MYB_DBD_monomeric_11_1 SELEX - 23058479 23058489 2.0E-06 CAAACCGTTAA 11 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 23058896 23058905 9.0E-06 AGCATATGGT 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 23058896 23058905 2.0E-06 ACCATATGCT 10 RELA_MA0107.1 JASPAR - 23055575 23055584 3.0E-06 TGGAATTTCC 10 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 23058657 23058666 5.0E-06 AGTAATTAAG 10 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX + 23058895 23058906 2.0E-06 AAGCATATGGTC 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 23058895 23058906 4.0E-06 GACCATATGCTT 12 Gfi_MA0038.1 JASPAR + 23058629 23058638 7.0E-06 CCAATCACTG 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 23058869 23058882 8.0E-06 GGGACAGCTGTCGA 14 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX - 23058657 23058666 1.0E-06 AGTAATTAAG 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 23058762 23058775 8.0E-06 TGCCAACATTTATT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 23058762 23058775 7.0E-06 AATAAATGTTGGCA 14 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 23058896 23058905 5.0E-06 AGCATATGGT 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 23058896 23058905 4.0E-06 ACCATATGCT 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX + 23058658 23058665 9.0E-06 TTAATTAC 8 SP1_C2H2_DBD_monomeric_11_1 SELEX - 23058678 23058688 1.0E-06 ACCACACCCAC 11 NRL_bZIP_DBD_monomeric_11_1 SELEX - 23057954 23057964 6.0E-06 ATACTGCTGAC 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 23057026 23057041 1.0E-06 TTACCATAATGCCTCA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 23058365 23058380 4.0E-06 AGTTGCTCTGGCAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 23058365 23058380 6.0E-06 TGTTGCCAGAGCAACT 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 23057834 23057851 3.0E-06 TCACTTATAGAACCATTA 18 RFX5_RFX_DBD_dimeric_16_3 SELEX + 23058365 23058380 2.0E-06 AGTTGCTCTGGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 23058365 23058380 1.0E-06 TGTTGCCAGAGCAACT 16 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX - 23058657 23058666 2.0E-06 AGTAATTAAG 10 Atoh1_bHLH_DBD_dimeric_10_1 SELEX - 23058896 23058905 1.0E-05 ACCATATGCT 10 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 23058762 23058775 8.0E-06 TGCCAACATTTATT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 23058762 23058775 6.0E-06 AATAAATGTTGGCA 14 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 23058657 23058666 4.0E-06 AGTAATTAAG 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 23055670 23055678 8.0E-06 CCCATTAAA 9 FEV_MA0156.1 JASPAR + 23055573 23055580 1.0E-05 CAGGAAAT 8 GSC_homeodomain_full_monomeric_10_1 SELEX + 23055504 23055513 9.0E-06 CCTAATCCTT 10 VAX2_homeodomain_DBD_monomeric_8_1 SELEX + 23058658 23058665 5.0E-06 TTAATTAC 8 MYBL1_MYB_DBD_monomeric_11_1 SELEX - 23058479 23058489 1.0E-06 CAAACCGTTAA 11 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 23058869 23058882 4.0E-06 GGGACAGCTGTCGA 14 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 23057866 23057879 7.0E-06 ACTCCCCACACAAG 14 NRF1_NRF_full_dimeric_12_1 SELEX + 23058137 23058148 0.0E+00 TGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 23058137 23058148 0.0E+00 TGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX + 23058188 23058199 1.0E-05 TGCGCAGGCGCT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 23057834 23057851 3.0E-06 TCACTTATAGAACCATTA 18 Sox2_MA0143.1 JASPAR + 23055559 23055573 8.0E-06 CCATTCTCTTGCAAC 15 MNX1_homeodomain_DBD_monomeric_10_1 SELEX - 23058657 23058666 7.0E-06 AGTAATTAAG 10 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 23058896 23058905 4.0E-06 ACCATATGCT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX + 23058896 23058905 9.0E-06 AGCATATGGT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX - 23058896 23058905 3.0E-06 ACCATATGCT 10 RREB1_MA0073.1 JASPAR - 23058673 23058692 9.0E-06 CCTCACCACACCCACTCACT 20 RREB1_MA0073.1 JASPAR - 23058675 23058694 1.0E-05 CCCCTCACCACACCCACTCA 20 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 23058896 23058905 3.0E-06 ACCATATGCT 10 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 23058658 23058665 9.0E-06 TTAATTAC 8 V_MINI20_B_M00324 TRANSFAC - 23058777 23058797 1.0E-06 GTCAGGCCCCAAGGAGGCGCC 21 V_NFKAPPAB65_01_M00052 TRANSFAC - 23055575 23055584 1.0E-06 TGGAATTTCC 10 V_SAP1A_01_M01167 TRANSFAC + 23058121 23058131 9.0E-06 CACCGGATGTG 11 V_E2A_Q6_01_M02088 TRANSFAC - 23058564 23058576 6.0E-06 AGACATCTGCAGA 13 V_STAT5A_Q6_M01890 TRANSFAC + 23058018 23058030 2.0E-06 ACTCTTCTAAGAA 13 V_MSX3_01_M01341 TRANSFAC - 23058655 23058670 1.0E-06 CCCAAGTAATTAAGTC 16 V_GCM_Q2_M00634 TRANSFAC - 23057101 23057112 7.0E-06 CATGCCAGCATT 12 V_HMGIY_Q3_M01010 TRANSFAC - 23055572 23055586 2.0E-06 TGTGGAATTTCCTGT 15 V_LMAF_Q2_M01139 TRANSFAC + 23057953 23057961 6.0E-06 GGTCAGCAG 9 V_AR_Q6_01_M01996 TRANSFAC + 23058321 23058335 9.0E-06 ACTCTTTCTGTTCTG 15 V_PROP1_01_M01294 TRANSFAC + 23058544 23058554 9.0E-06 TAATTCTGTTA 11 V_ISL2_01_M01328 TRANSFAC - 23058655 23058670 2.0E-06 CCCAAGTAATTAAGTC 16 V_HOXD1_01_M01448 TRANSFAC + 23058654 23058670 4.0E-06 AGACTTAATTACTTGGG 17 V_HOXC4_01_M01369 TRANSFAC - 23058653 23058669 2.0E-06 CCAAGTAATTAAGTCTA 17 V_MYB_05_M02779 TRANSFAC - 23058476 23058492 0.0E+00 ATGCAAACCGTTAAATC 17 V_NKX61_03_M01489 TRANSFAC + 23058653 23058669 5.0E-06 TAGACTTAATTACTTGG 17 V_HOXC6_01_M01406 TRANSFAC - 23058653 23058669 2.0E-06 CCAAGTAATTAAGTCTA 17 V_HOXC6_01_M01406 TRANSFAC + 23058654 23058670 3.0E-06 AGACTTAATTACTTGGG 17 V_PU1_Q4_M01172 TRANSFAC + 23057705 23057723 3.0E-06 AGCCTCAATTTCCCCATTC 19 V_LHX3A_01_M00510 TRANSFAC - 23058658 23058667 2.0E-06 AAGTAATTAA 10 V_PSX1_01_M01435 TRANSFAC + 23058654 23058670 8.0E-06 AGACTTAATTACTTGGG 17 V_DLX5_01_M01388 TRANSFAC - 23058653 23058668 6.0E-06 CAAGTAATTAAGTCTA 16 V_CETS2_02_M02064 TRANSFAC + 23058122 23058131 1.0E-05 ACCGGATGTG 10 V_CDP_04_M01344 TRANSFAC + 23057071 23057085 9.0E-06 GACTGATGATCACAC 15 V_CETS1P54_02_M00074 TRANSFAC + 23055570 23055582 1.0E-06 CAACAGGAAATTC 13 V_HMGA2_01_M01300 TRANSFAC + 23057031 23057045 5.0E-06 ATAATGCCTCATATT 15 V_PDEF_02_M02075 TRANSFAC + 23058122 23058131 8.0E-06 ACCGGATGTG 10 V_EN1_02_M01365 TRANSFAC - 23058655 23058670 1.0E-06 CCCAAGTAATTAAGTC 16 V_ELK1_05_M01981 TRANSFAC + 23058122 23058131 9.0E-06 ACCGGATGTG 10 V_SAP1A_02_M01983 TRANSFAC + 23058122 23058131 9.0E-06 ACCGGATGTG 10 V_STAF_01_M00262 TRANSFAC + 23057024 23057045 1.0E-06 TTTTACCATAATGCCTCATATT 22 V_NKX61_01_M00424 TRANSFAC - 23055668 23055680 6.0E-06 GTTTTAATGGGAA 13 V_HOXA3_02_M01337 TRANSFAC + 23058653 23058666 7.0E-06 TAGACTTAATTACT 14 V_CREL_01_M00053 TRANSFAC - 23055575 23055584 6.0E-06 TGGAATTTCC 10 V_MRF2_01_M00454 TRANSFAC - 23057674 23057687 4.0E-06 ATGCCTAATACCAA 14 V_OLF1_01_M00261 TRANSFAC - 23058094 23058115 8.0E-06 GACGGGTCCTCCAAGAGTTTGG 22 V_NFKB_Q6_M00194 TRANSFAC - 23055573 23055586 1.0E-06 TGTGGAATTTCCTG 14 V_NFKB_Q6_M00194 TRANSFAC - 23057908 23057921 8.0E-06 TGGGGACCTTCCCC 14 V_HOXB6_01_M01460 TRANSFAC + 23058653 23058668 4.0E-06 TAGACTTAATTACTTG 16 V_MYBL1_03_M02780 TRANSFAC - 23058476 23058492 0.0E+00 ATGCAAACCGTTAAATC 17 V_IRF_Q6_M00772 TRANSFAC + 23058320 23058334 6.0E-06 TACTCTTTCTGTTCT 15 V_ELF5_01_M01197 TRANSFAC + 23055571 23055581 6.0E-06 AACAGGAAATT 11 V_CUX1_04_M02959 TRANSFAC + 23057071 23057085 9.0E-06 GACTGATGATCACAC 15 V_PAX6_Q2_M00979 TRANSFAC + 23058793 23058806 6.0E-06 CTGACGTTGTACTA 14 V_GR_Q6_M00192 TRANSFAC + 23058318 23058336 4.0E-06 TGTACTCTTTCTGTTCTGT 19 V_MEF2_Q6_01_M00941 TRANSFAC - 23058847 23058858 9.0E-06 AGCTCTTTTAAG 12 V_POU6F1_01_M00465 TRANSFAC - 23057688 23057698 6.0E-06 GCTTAGATTAT 11 V_OCT4_02_M01124 TRANSFAC - 23057112 23057126 9.0E-06 TTTGACTTTGAAAAC 15 V_LHX3b_01_M01971 TRANSFAC - 23058658 23058667 2.0E-06 AAGTAATTAA 10 V_NKX63_01_M01470 TRANSFAC + 23058653 23058669 5.0E-06 TAGACTTAATTACTTGG 17 V_ICSBP_Q6_M00699 TRANSFAC + 23057087 23057098 4.0E-06 GAAAAGAAACCA 12 V_GR_Q6_02_M01836 TRANSFAC + 23058324 23058336 1.0E-06 CTTTCTGTTCTGT 13 V_ELF1_Q6_M00746 TRANSFAC + 23055569 23055580 5.0E-06 GCAACAGGAAAT 12 V_GCNF_01_M00526 TRANSFAC + 23058591 23058608 1.0E-05 GAACAAGTCAAGTTCATC 18 V_GCNF_01_M00526 TRANSFAC + 23058898 23058915 1.0E-05 CATATGGTCAAGTTTAGC 18 V_HOXB7_01_M01396 TRANSFAC - 23058653 23058668 1.0E-06 CAAGTAATTAAGTCTA 16 V_HOXB7_01_M01396 TRANSFAC + 23058655 23058670 1.0E-05 GACTTAATTACTTGGG 16 V_HOXA7_02_M01336 TRANSFAC + 23058654 23058670 5.0E-06 AGACTTAATTACTTGGG 17 V_MINI19_B_M00323 TRANSFAC - 23058777 23058797 3.0E-06 GTCAGGCCCCAAGGAGGCGCC 21 V_ERM_02_M02069 TRANSFAC + 23058122 23058131 9.0E-06 ACCGGATGTG 10 V_NFYC_Q5_M02107 TRANSFAC + 23058626 23058639 4.0E-06 CGGCCAATCACTGC 14 V_MYF6_04_M02885 TRANSFAC + 23058246 23058260 2.0E-06 ATCAACAGACTCAAC 15 V_CNOT3_01_M01253 TRANSFAC - 23058621 23058630 4.0E-06 GGCCGCGCCG 10 V_BARHL1_01_M01332 TRANSFAC - 23058655 23058670 3.0E-06 CCCAAGTAATTAAGTC 16 V_PDEF_01_M02040 TRANSFAC + 23058122 23058131 5.0E-06 ACCGGATGTG 10 V_CAAT_C_M00200 TRANSFAC + 23058628 23058652 2.0E-06 GCCAATCACTGCACAGGCCCCAGTT 25 V_GFI1B_01_M01058 TRANSFAC + 23058629 23058640 4.0E-06 CCAATCACTGCA 12 V_AIRE_01_M00999 TRANSFAC - 23055665 23055690 5.0E-06 CTGGAGACTGGTTTTAATGGGAAATT 26 V_ZFP206_01_M01742 TRANSFAC + 23058137 23058147 0.0E+00 TGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 23058138 23058148 0.0E+00 TGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 23058188 23058198 1.0E-06 TGCGCAGGCGC 11 V_MSX1_02_M01412 TRANSFAC - 23058655 23058670 5.0E-06 CCCAAGTAATTAAGTC 16 V_BDP1_01_M01796 TRANSFAC - 23058522 23058533 9.0E-06 GGTATCAAACCC 12 V_NRSF_01_M00256 TRANSFAC + 23057942 23057962 5.0E-06 TGCAGCGCCCCGGTCAGCAGT 21 V_NRF1_Q6_M00652 TRANSFAC - 23058137 23058146 2.0E-06 CGCATGCGCA 10 V_NRF1_Q6_M00652 TRANSFAC + 23058139 23058148 2.0E-06 CGCATGCGCA 10 V_BARX2_01_M01431 TRANSFAC - 23058653 23058668 3.0E-06 CAAGTAATTAAGTCTA 16 V_HOXC5_01_M01454 TRANSFAC - 23058653 23058669 4.0E-06 CCAAGTAATTAAGTCTA 17 V_SOX2_01_M02246 TRANSFAC + 23055559 23055573 8.0E-06 CCATTCTCTTGCAAC 15 V_CETS1_02_M02063 TRANSFAC + 23058122 23058131 9.0E-06 ACCGGATGTG 10 V_EWSR1FLI1_01_M02252 TRANSFAC + 23058696 23058713 1.0E-06 GGGAGGCAGGGAGGAAGC 18 V_EKLF_Q5_M01874 TRANSFAC - 23058678 23058687 9.0E-06 CCACACCCAC 10 V_HOXB3_01_M01330 TRANSFAC + 23058654 23058670 1.0E-06 AGACTTAATTACTTGGG 17 V_IRF1_01_M00062 TRANSFAC - 23057161 23057173 3.0E-06 GAATACTGAAAAC 13 V_BARHL2_01_M01446 TRANSFAC - 23058655 23058670 8.0E-06 CCCAAGTAATTAAGTC 16 V_HOXA7_03_M01394 TRANSFAC - 23058653 23058668 4.0E-06 CAAGTAATTAAGTCTA 16 V_HOXD3_01_M01338 TRANSFAC + 23058653 23058668 8.0E-06 TAGACTTAATTACTTG 16 V_NFYA_Q5_M02106 TRANSFAC + 23058626 23058639 8.0E-06 CGGCCAATCACTGC 14 V_P300_01_M00033 TRANSFAC + 23058667 23058680 4.0E-06 TGGGGGAGTGAGTG 14 V_HOXD10_01_M01375 TRANSFAC + 23055604 23055620 8.0E-06 AGCACCATAAAAAGGAA 17 V_FEV_01_M02269 TRANSFAC + 23055573 23055580 1.0E-05 CAGGAAAT 8 V_SEF1_C_M00214 TRANSFAC - 23058432 23058450 1.0E-06 GAGCCGGATACCTCTGGTT 19 V_RFX1_02_M00281 TRANSFAC + 23058364 23058381 0.0E+00 CAGTTGCTCTGGCAACAA 18 V_NANOG_02_M01247 TRANSFAC - 23055554 23055573 9.0E-06 GTTGCAAGAGAATGGAGGAG 20 V_T3RALPHA_Q6_M01724 TRANSFAC - 23058714 23058724 3.0E-06 GCTGAGGTCAG 11 V_HOXC8_01_M01321 TRANSFAC + 23058653 23058668 7.0E-06 TAGACTTAATTACTTG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.