Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SYT6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 148281 synaptotagmin VI chr1 - 114694562 - 114701472 114695062 Transcription Factor Binding Sites   Download all TFBS in the SYT6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 4.0E-06 TTAATTAA 8 Uncx_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 4.0E-06 TTAATTAA 8 GCM1_GCM_DBD_monomeric_10_1 SELEX - 114697059 114697068 2.0E-06 CATGCGGGTA 10 GCM2_GCM_DBD_monomeric_10_1 SELEX - 114697059 114697068 3.0E-06 CATGCGGGTA 10 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 4.0E-06 TTAATTAA 8 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 4.0E-06 TTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 ZNF306_C2H2_full_monomeric_14_1 SELEX - 114697276 114697289 8.0E-06 AAGTCTAGCCTCAA 14 NHLH1_MA0048.1 JASPAR + 114695336 114695347 2.0E-06 CCGCAGCTGCGC 12 NHLH1_MA0048.1 JASPAR - 114695336 114695347 2.0E-06 GCGCAGCTGCGG 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 114697067 114697082 0.0E+00 TGTTGCTATGGCGACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 114697067 114697082 1.0E-06 CGTCGCCATAGCAACA 16 EBF1_EBF_full_dimeric_14_1 SELEX + 114696801 114696814 8.0E-06 ACTCCCTGGGGATA 14 EBF1_EBF_full_dimeric_14_1 SELEX - 114696801 114696814 8.0E-06 TATCCCCAGGGAGT 14 Shox2_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 Shox2_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 114697614 114697623 1.0E-05 CTTAATTAAC 10 NKX6-2_homeodomain_full_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 NKX6-2_homeodomain_full_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 114697758 114697768 8.0E-06 TGCCCCAGGCA 11 LMX1B_homeodomain_full_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX - 114697614 114697623 7.0E-06 GTTAATTAAG 10 ZNF524_C2H2_full_dimeric_12_1 SELEX + 114695611 114695622 4.0E-06 ACCCTCATACCC 12 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 114697067 114697082 0.0E+00 TGTTGCTATGGCGACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 114697067 114697082 0.0E+00 CGTCGCCATAGCAACA 16 SHOX_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 SHOX_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 SP1_MA0079.2 JASPAR + 114695630 114695639 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 114695644 114695653 7.0E-06 CCCCGCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 114697749 114697758 9.0E-06 ACCAGCTGCT 10 NOTO_homeodomain_DBD_monomeric_10_1 SELEX + 114697614 114697623 7.0E-06 CTTAATTAAC 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 114697614 114697623 6.0E-06 CTTAATTAAC 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 SP1_C2H2_DBD_monomeric_11_1 SELEX + 114695629 114695639 4.0E-06 ACCCCGCCCCC 11 RFX2_RFX_DBD_dimeric_16_1 SELEX + 114697067 114697082 0.0E+00 TGTTGCTATGGCGACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 114697067 114697082 0.0E+00 CGTCGCCATAGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 114697067 114697082 1.0E-06 TGTTGCTATGGCGACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 114697067 114697082 0.0E+00 CGTCGCCATAGCAACA 16 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 114696777 114696793 5.0E-06 GTAATGATTTTAAGTAC 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 114696777 114696793 7.0E-06 GTACTTAAAATCATTAC 17 GCM1_GCM_full_monomeric_11_1 SELEX - 114697058 114697068 0.0E+00 CATGCGGGTAC 11 REST_MA0138.2 JASPAR - 114697840 114697860 0.0E+00 TTCAGCACCGTGGACAGAGCC 21 ZNF524_C2H2_full_monomeric_14_1 SELEX + 114696426 114696439 1.0E-06 CTCGAACCCGCGCC 14 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 NHLH1_bHLH_full_dimeric_10_1 SELEX + 114695337 114695346 2.0E-06 CGCAGCTGCG 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 114695337 114695346 2.0E-06 CGCAGCTGCG 10 NFE2L2_MA0150.1 JASPAR + 114693931 114693941 1.0E-06 GTGACTCAGCA 11 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 4.0E-06 TTAATTAA 8 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 4.0E-06 TTAATTAA 8 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 114697615 114697622 9.0E-06 TTAATTAA 8 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 114697615 114697622 9.0E-06 TTAATTAA 8 V_NRSF_Q4_M01028 TRANSFAC + 114697841 114697859 0.0E+00 GCTCTGTCCACGGTGCTGA 19 V_NKX29_01_M01352 TRANSFAC - 114696783 114696799 0.0E+00 CGTGAAGTACTTAAAAT 17 V_NKX29_01_M01352 TRANSFAC + 114696784 114696800 1.0E-06 TTTTAAGTACTTCACGG 17 V_FOXJ1_04_M02854 TRANSFAC + 114697238 114697252 5.0E-06 TAAGCATAACAAGAA 15 V_SP1_Q6_01_M00931 TRANSFAC + 114696451 114696460 4.0E-06 GGGGCGGGGC 10 V_HOXA4_01_M01370 TRANSFAC + 114697610 114697626 3.0E-06 GCCTCTTAATTAACACG 17 V_RFX4_03_M02789 TRANSFAC - 114697065 114697079 8.0E-06 CGCCATAGCAACATG 15 V_RFX4_03_M02789 TRANSFAC + 114697102 114697116 4.0E-06 CTCCATGGCAACGGG 15 V_CART1_02_M01362 TRANSFAC - 114697610 114697626 6.0E-06 CGTGTTAATTAAGAGGC 17 V_CART1_02_M01362 TRANSFAC + 114697611 114697627 1.0E-05 CCTCTTAATTAACACGC 17 V_HOXC4_01_M01369 TRANSFAC - 114697610 114697626 2.0E-06 CGTGTTAATTAAGAGGC 17 V_HOXC4_01_M01369 TRANSFAC + 114697611 114697627 3.0E-06 CCTCTTAATTAACACGC 17 V_SP1_03_M02281 TRANSFAC + 114695630 114695639 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 114695644 114695653 7.0E-06 CCCCGCCCCC 10 V_HOXC6_01_M01406 TRANSFAC - 114697610 114697626 4.0E-06 CGTGTTAATTAAGAGGC 17 V_NKX24_01_M01350 TRANSFAC - 114696782 114696797 6.0E-06 TGAAGTACTTAAAATC 16 V_PPAR_DR1_Q2_M00763 TRANSFAC - 114697596 114697608 9.0E-06 AGACCTTTCTCCC 13 V_SP1_02_M01303 TRANSFAC - 114695628 114695638 3.0E-06 GGGGCGGGGTG 11 V_SP1_02_M01303 TRANSFAC - 114696536 114696546 8.0E-06 GGGGCGGGGAC 11 V_AP4_Q6_01_M00927 TRANSFAC - 114697750 114697758 6.0E-06 ACCAGCTGC 9 V_ALX4_02_M01417 TRANSFAC - 114697610 114697626 0.0E+00 CGTGTTAATTAAGAGGC 17 V_ALX4_02_M01417 TRANSFAC + 114697611 114697627 2.0E-06 CCTCTTAATTAACACGC 17 V_PAX7_01_M01339 TRANSFAC - 114697610 114697626 3.0E-06 CGTGTTAATTAAGAGGC 17 V_PAX7_01_M01339 TRANSFAC + 114697611 114697627 4.0E-06 CCTCTTAATTAACACGC 17 V_CART1_03_M01453 TRANSFAC - 114697610 114697626 2.0E-06 CGTGTTAATTAAGAGGC 17 V_CART1_03_M01453 TRANSFAC + 114697611 114697627 7.0E-06 CCTCTTAATTAACACGC 17 V_VSX1_01_M01335 TRANSFAC - 114697610 114697626 4.0E-06 CGTGTTAATTAAGAGGC 17 V_VSX1_01_M01335 TRANSFAC + 114697611 114697627 1.0E-05 CCTCTTAATTAACACGC 17 V_NRSE_B_M00325 TRANSFAC - 114697840 114697860 0.0E+00 TTCAGCACCGTGGACAGAGCC 21 V_ZNF219_01_M01122 TRANSFAC + 114695622 114695633 1.0E-05 CTCCCCCACCCC 12 V_GC_01_M00255 TRANSFAC - 114695627 114695640 4.0E-06 AGGGGGCGGGGTGG 14 V_LMX1_01_M01409 TRANSFAC - 114697610 114697626 7.0E-06 CGTGTTAATTAAGAGGC 17 V_LMX1_01_M01409 TRANSFAC + 114697611 114697627 9.0E-06 CCTCTTAATTAACACGC 17 V_NKX26_01_M01322 TRANSFAC - 114696782 114696797 6.0E-06 TGAAGTACTTAAAATC 16 V_ZBED6_01_M01598 TRANSFAC - 114695393 114695404 8.0E-06 CGAGCTCGCCGG 12 V_KROX_Q6_M00982 TRANSFAC + 114695620 114695633 8.0E-06 CCCTCCCCCACCCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 114695620 114695629 4.0E-06 CCCTCCCCCA 10 V_OLF1_01_M00261 TRANSFAC + 114695318 114695339 5.0E-06 CGCGACTCCCCGGAGACGCCGC 22 V_SP1_Q6_M00196 TRANSFAC - 114695628 114695640 1.0E-06 AGGGGGCGGGGTG 13 V_PMX2A_01_M01444 TRANSFAC - 114697612 114697627 1.0E-05 GCGTGTTAATTAAGAG 16 V_MATH1_Q2_M01716 TRANSFAC + 114697750 114697759 3.0E-06 GCAGCTGGTG 10 V_HIC1_05_M02763 TRANSFAC + 114697714 114697729 3.0E-06 TCTGTGCCAACCGGCC 16 V_RFXDC2_03_M02790 TRANSFAC + 114697102 114697116 8.0E-06 CTCCATGGCAACGGG 15 V_GLIS2_03_M02759 TRANSFAC - 114697140 114697155 8.0E-06 AAATGACCCCCCATTC 16 V_REST_01_M01256 TRANSFAC + 114697836 114697857 0.0E+00 CCCTGGCTCTGTCCACGGTGCT 22 V_REST_01_M01256 TRANSFAC - 114699342 114699363 0.0E+00 CCCAGGCCCTGTCCAATGTACT 22 V_IRF3_06_M02871 TRANSFAC + 114697597 114697610 5.0E-06 GGAGAAAGGTCTTG 14 V_OCT1_08_M01354 TRANSFAC - 114697612 114697627 5.0E-06 GCGTGTTAATTAAGAG 16 V_UNCX4.1_01_M01458 TRANSFAC + 114697610 114697626 2.0E-06 GCCTCTTAATTAACACG 17 V_UNCX4.1_01_M01458 TRANSFAC - 114697611 114697627 7.0E-06 GCGTGTTAATTAAGAGG 17 V_SP1SP3_Q4_M01219 TRANSFAC + 114696591 114696601 5.0E-06 CCGCCCCCTCT 11 V_MUSCLE_INI_B_M00321 TRANSFAC + 114695619 114695639 2.0E-06 ACCCTCCCCCACCCCGCCCCC 21 V_OTP_01_M01323 TRANSFAC + 114697610 114697626 2.0E-06 GCCTCTTAATTAACACG 17 V_OTP_01_M01323 TRANSFAC - 114697611 114697627 3.0E-06 GCGTGTTAATTAAGAGG 17 V_GCM1_03_M02758 TRANSFAC + 114697056 114697071 4.0E-06 CGGTACCCGCATGTTG 16 V_NKX3A_01_M00451 TRANSFAC + 114696784 114696795 4.0E-06 TTTTAAGTACTT 12 V_MAFK_Q3_M02022 TRANSFAC + 114693932 114693942 4.0E-06 TGACTCAGCAG 11 V_PROP1_02_M01320 TRANSFAC - 114697610 114697626 0.0E+00 CGTGTTAATTAAGAGGC 17 V_PROP1_02_M01320 TRANSFAC + 114697611 114697627 2.0E-06 CCTCTTAATTAACACGC 17 V_PMX2B_01_M01356 TRANSFAC + 114697610 114697626 1.0E-06 GCCTCTTAATTAACACG 17 V_PMX2B_01_M01356 TRANSFAC - 114697611 114697627 1.0E-06 GCGTGTTAATTAAGAGG 17 V_SP1_01_M00008 TRANSFAC - 114695629 114695638 3.0E-06 GGGGCGGGGT 10 V_NKX23_01_M01457 TRANSFAC + 114696784 114696799 0.0E+00 TTTTAAGTACTTCACG 16 V_NKX23_01_M01457 TRANSFAC - 114696784 114696799 0.0E+00 CGTGAAGTACTTAAAA 16 V_MAF_Q6_01_M00983 TRANSFAC - 114693931 114693941 7.0E-06 TGCTGAGTCAC 11 V_HOXB4_01_M01424 TRANSFAC - 114697610 114697626 2.0E-06 CGTGTTAATTAAGAGGC 17 V_HOXB4_01_M01424 TRANSFAC + 114697611 114697627 8.0E-06 CCTCTTAATTAACACGC 17 V_SP4_Q5_M01273 TRANSFAC + 114695643 114695653 5.0E-06 CCCCCGCCCCC 11 V_OTX2_Q3_M01719 TRANSFAC - 114696515 114696527 8.0E-06 GAAGTGATTAAAA 13 V_HOXA7_02_M01336 TRANSFAC - 114697610 114697626 1.0E-06 CGTGTTAATTAAGAGGC 17 V_HOXA7_02_M01336 TRANSFAC + 114697611 114697627 4.0E-06 CCTCTTAATTAACACGC 17 V_SHOX2_01_M01415 TRANSFAC - 114697610 114697626 4.0E-06 CGTGTTAATTAAGAGGC 17 V_FAC1_01_M00456 TRANSFAC + 114697239 114697252 5.0E-06 AAGCATAACAAGAA 14 V_FOXL1_02_M02857 TRANSFAC + 114697238 114697253 5.0E-06 TAAGCATAACAAGAAA 16 V_HEN1_02_M00058 TRANSFAC - 114695331 114695352 7.0E-06 CTGGCGCGCAGCTGCGGCGTCT 22 V_LUN1_01_M00480 TRANSFAC - 114692089 114692105 2.0E-06 TCACAGCTTTTTCAGGA 17 V_NKX3A_02_M01383 TRANSFAC - 114696783 114696799 0.0E+00 CGTGAAGTACTTAAAAT 17 V_NKX3A_02_M01383 TRANSFAC + 114696784 114696800 1.0E-06 TTTTAAGTACTTCACGG 17 V_HDX_01_M01333 TRANSFAC - 114696776 114696792 7.0E-06 TACTTAAAATCATTACA 17 V_NKX22_01_M00485 TRANSFAC + 114696786 114696795 1.0E-06 TTAAGTACTT 10 V_NRF2_Q4_M00821 TRANSFAC - 114693930 114693942 2.0E-06 CTGCTGAGTCACA 13 V_NRSF_01_M00256 TRANSFAC - 114697840 114697860 0.0E+00 TTCAGCACCGTGGACAGAGCC 21 V_REST_02_M02256 TRANSFAC - 114697840 114697860 0.0E+00 TTCAGCACCGTGGACAGAGCC 21 V_ALX4_03_M02944 TRANSFAC - 114697610 114697626 0.0E+00 CGTGTTAATTAAGAGGC 17 V_ALX4_03_M02944 TRANSFAC + 114697611 114697627 2.0E-06 CCTCTTAATTAACACGC 17 V_ZFP281_01_M01597 TRANSFAC + 114695585 114695595 5.0E-06 AGGGGGTGGGG 11 V_ZFP281_04_M02831 TRANSFAC + 114695617 114695631 1.0E-06 ATACCCTCCCCCACC 15 V_NFE2_Q6_M02104 TRANSFAC + 114693930 114693945 7.0E-06 TGTGACTCAGCAGCCA 16 V_EFC_Q6_M00626 TRANSFAC + 114695924 114695937 6.0E-06 AGATGCGAGGGAAA 14 V_NFE2_01_M00037 TRANSFAC - 114693931 114693941 0.0E+00 TGCTGAGTCAC 11 V_HOXA7_03_M01394 TRANSFAC - 114697610 114697625 5.0E-06 GTGTTAATTAAGAGGC 16 V_SP1_Q2_01_M00933 TRANSFAC + 114695630 114695639 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 114695644 114695653 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 114696538 114696547 7.0E-06 CCCCGCCCCT 10 V_NFE2L2_01_M02263 TRANSFAC + 114693931 114693941 1.0E-06 GTGACTCAGCA 11 V_UF1H3BETA_Q6_M01068 TRANSFAC + 114695589 114695602 4.0E-06 GGTGGGGGAAGGAC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 114695618 114695631 4.0E-06 GGTGGGGGAGGGTA 14 V_LHX5_01_M01353 TRANSFAC - 114697610 114697626 7.0E-06 CGTGTTAATTAAGAGGC 17 V_OG2_02_M01441 TRANSFAC - 114697610 114697626 2.0E-06 CGTGTTAATTAAGAGGC 17 V_SP1_Q4_01_M00932 TRANSFAC - 114695628 114695640 1.0E-06 AGGGGGCGGGGTG 13 V_RFX1_02_M00281 TRANSFAC - 114697066 114697083 0.0E+00 CCGTCGCCATAGCAACAT 18 V_NANOG_02_M01247 TRANSFAC + 114697238 114697257 8.0E-06 TAAGCATAACAAGAAAGACA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.